Moc04g30890 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g30890
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	30S ribosomal protein S13
Location	chr4: 23203044 .. 23204291 (+)
RNA-Seq Expression	Moc04g30890
Synteny	Moc04g30890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAGAGTTTAGCAATGCCCGTGGCTCCTTCGCTCTCCCTTATCTGCAATGGTCGAAACCCTAATCCGCTCTCTACCACCCTCTCCTTTCCCATTTCTAGCCCCCAGGTTAATTTTCTCTAACCACTTTGTTTCATCAATTTTACTGGTTTCTATAATTTTGTTTCCATAATTTCTTGTATCCTCTTGATTTCATATTGATTCTGCTTCTCCATTTATGTTCCATTGTCTAACAAATTATTCCCGTATTTCTTTCTGCATTCCGTTTTCTCTTGTACCATTATCGCAAGTTGATTCTTTGAAATTATTAGAATTCGATTGAGTTTGAAATTCCTTTTCAATGCACATTTGAGTTATTCCTTATTGAATACTGTTGATGCAACAAAAGTTCTTCATTTCGTTTCCGGAACTGATATTGCGCCCGGAGGAACCAAATTCGTGATCCTAATTTTTTCCCCCAAATTCCGCAATCCGTGTTATAGTTTCCCTCACCCTTTCTGTGCATGATTATAAAGAATTTAAGCGGATATATGGTCTACCCTATAGGAAATGGACTGAAAGAGTAGATTCTGCAGGTTACTGTCTGATCTTATATGGAAATTTGGACTCGTTGGTGGATGCTAGATATTATCAAGTTTTTCGTATGGGTTGTTCTCTTGATTGGAAATCTGCAGTCGTCCGTAACTATTTAAGAATCCTAGATCTTCTTCTTGCGTAATCCCTCATTTTTCTTCCTTACATTTTCTTTAGGTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGCTAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAGATCTGGTCTCTCTCTTTCTCTGTCTGTGTATGTTGAGAGAAAGTGTAGCTCAAAACTACAAATGTTGGGTCTCTCTGTGCTTACAAGTTTGATTGTTTGTCTTGCAGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGCTGA

mRNA sequence

ATGGCGCAGAGTTTAGCAATGCCCGTGGCTCCTTCGCTCTCCCTTATCTGCAATGGTCGAAACCCTAATCCGCTCTCTACCACCCTCTCCTTTCCCATTTCTAGCCCCCAGGTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGCTAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAGATCTGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGCTGA

Coding sequence (CDS)

ATGGCGCAGAGTTTAGCAATGCCCGTGGCTCCTTCGCTCTCCCTTATCTGCAATGGTCGAAACCCTAATCCGCTCTCTACCACCCTCTCCTTTCCCATTTCTAGCCCCCAGGTTCGTGGTCTTCAAATCAAGTGTGTTCGAGTTGGAGGAGTTGAAATACCCAACAACAAGCGAATTCAATACTCCCTTCAATATATACATGGAATTGGTCGCAACAATGCTAAGAAAATACTGTATGATCTAAGCCTGGAGAACAAGATAACCAAGGACTTATCTGAGGAGGAACTCATATCCATCAGAGATGAAGTTTCCAAGTTCATGATTGAAGGAGATCTGAGGCGGTTCAATGCACTCGCCATAAGGAGATTAAAAGAGATTCAGTGCTATAGAGGGATTCGACACATTCAGGGATTGCCTTGCAGAGGGCAGCGAACCAAAAACAACTGCAGGACCTTGAAGGGTAAGAAAGTTGCTATTCCAGGGAAGAAGAAGGCTCCTCGCTGA

Protein sequence

MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR

Homology

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BLAST of Moc04g30890 vs. NCBI nr
Match: XP_022141626.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia])

HSP 1 Score: 329.7 bits (844), Expect = 1.4e-86
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 167

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BLAST of Moc04g30890 vs. NCBI nr
Match: XP_038876079.1 (30S ribosomal protein S13, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 310.5 bits (794), Expect = 9.1e-81
Identity = 155/167 (92.81%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQSLAMP+APSLS+ICN RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Moc04g30890 vs. NCBI nr
Match: KAA0047502.1 (30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79
Identity = 153/167 (91.62%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]

BLAST of Moc04g30890 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 1.0e-79
Identity = 153/167 (91.62%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Moc04g30890 vs. NCBI nr
Match: XP_004140327.1 (30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothetical protein Csa_018654 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 7.9e-77
Identity = 149/167 (89.22%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQ+ A+P+A SLSLI N RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Moc04g30890 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.2e-65
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLS-TTLSFPIS-SPQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLSLICN    NPLS  TL+ P S +P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  IQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNAL 120
           I+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSK+MIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AI GKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Moc04g30890 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-61
Identity = 122/169 (72.19%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPL-STTLSF-PISSPQVRGLQIKCVRVGGVEIPNNKR 60
           MA +LA PVAPS+SLICN +    L S++L+F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  IQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNAL 120
           ++YSLQYIHGIGR+ A++IL DL+LENK+TK+LSE+EL+ +RDEV+K+MIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIPGKKKAP 167
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V I GKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]

BLAST of Moc04g30890 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 72/147 (48.98%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 26  STTLSFPISSPQVR-----GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +ELI +R+EV +     +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RGQRT  N RT KGK VAI GKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Moc04g30890 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.7e-27
Identity = 61/122 (50.00%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 38  VRGLQIKCVRVG---GVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEE 97
           V G++++ + +G   G EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L +ENK  KDLS+ 
Sbjct: 21  VHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKR 80

Query: 98  ELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKG 157
           EL SIR+ +SK++I  DL++     + RL  IQCYRGIRH+  LPCRGQRT  N RT + 
Sbjct: 81  ELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRS 140

[Close]

BLAST of Moc04g30890 vs. ExPASy Swiss-Prot
Match: A0PXX2 (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) OX=386415 GN=rpsM PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.0e-27
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 47  RVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYDLSLE-NKITKDLSEEELISIRDEVSK 106
           R+ G+++P  KR++  L YI+GIG N +++IL +  +  +   KDLSEEE+ +IRD + K
Sbjct: 3   RIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGK 62

Query: 107 -FMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKK 164
            F+IEGDLRR  AL I+RL EI CYRGIRH +GLP RGQ+TK N RT KG K AI GKK
Sbjct: 63  NFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121

[Close]

BLAST of Moc04g30890 vs. ExPASy TrEMBL
Match: A0A6J1CJS2 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011934 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.0e-87
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 167

[Close]

BLAST of Moc04g30890 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 153/167 (91.62%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]

BLAST of Moc04g30890 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.9e-80
Identity = 153/167 (91.62%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQ+LA+P+APSLSLICN RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL+LENKITKDLSEEEL S+RDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Moc04g30890 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 149/167 (89.22%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MAQ+ A+P+A SLSLI N RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Moc04g30890 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 147/167 (88.02%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60
           MA +LA+PVAPSLSLICN R  NPLS  +SFPIS+P+V GLQIKCVRVGGVEIPNNKR+ 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL++ENKITKDL+EEELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Moc04g30890 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 248.1 bits (632), Expect = 5.1e-66
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLS-TTLSFPIS-SPQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLSLICN    NPLS  TL+ P S +P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  IQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNAL 120
           I+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSK+MIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AI GKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

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BLAST of Moc04g30890 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-36
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MAQSLAMPVAPSLSLICNGRNPNPLS-TTLSFPIS-SPQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMPVA SLSLICN    NPLS  TL+ P S +P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  IQYSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDL 113
           I+YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSK+MIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114

[Close]

BLAST of Moc04g30890 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-32
Identity = 72/147 (48.98%), Postives = 96/147 (65.31%), Query Frame = 0


Query: 26  STTLSFPISSPQVR-----GLQIKCVRVGGVEIPNNKRIQYSLQYIHGIGRNNAKKILYD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +ELI +R+EV +     +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKVAIPGKKKAPR 168
           RGQRT  N RT KGK VAI GKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

The following BLAST results are available for this feature:

BLAST of Moc04g30890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141626.1	1.4e-86	100.00	30S ribosomal protein S13, chloroplastic-like [Momordica charantia]	[more]
XP_038876079.1	9.1e-81	92.81	30S ribosomal protein S13, chloroplastic-like [Benincasa hispida]	[more]
KAA0047502.1	1.0e-79	91.62	30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal p...	[more]
XP_008465819.1	1.0e-79	91.62	PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]	[more]
XP_004140327.1	7.9e-77	89.22	30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothe...	[more]

BLAST of Moc04g30890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42732	7.2e-65	75.15	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82163	1.3e-61	72.19	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
Q9CA19	4.0e-31	48.98	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q8LPW2	2.7e-27	50.00	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP...	[more]
A0PXX2	6.0e-27	55.46	30S ribosomal protein S13 OS=Clostridium novyi (strain NT) OX=386415 GN=rpsM PE=...	[more]

BLAST of Moc04g30890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJS2	7.0e-87	100.00	30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A5A7TVL6	4.9e-80	91.62	30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CPR4	4.9e-80	91.62	30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408...	[more]
A0A0A0KN28	3.8e-77	89.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1	[more]
A0A6J1JXU5	1.5e-76	88.02	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Moc04g30890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14320.1	5.1e-66	75.15	Ribosomal protein S13/S18 family	[more]
AT5G14320.2	3.3e-36	69.30	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	2.9e-32	48.98	Ribosomal protein S13/S18 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.50		coord: 46..114 e-value: 7.6E-25 score: 88.9
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..165
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 105..151 e-value: 3.0E-18 score: 66.4
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 48..154 score: 34.616734
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 45..161 score: 23.911079
IPR019980	Ribosomal protein S13, bacterial-type	TIGRFAM	TIGR03631	TIGR03631	coord: 47..156 e-value: 9.2E-40 score: 133.6
IPR019980	Ribosomal protein S13, bacterial-type	PANTHER	PTHR10871:SF1	37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL	coord: 1..165
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 115..167 e-value: 4.7E-25 score: 89.0
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 130..143
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 46..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g30890.1	Moc04g30890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding