Moc04g30170 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g30170
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionBnaCnng12400D protein
Locationchr4: 22514147 .. 22515591 (+)
RNA-Seq ExpressionMoc04g30170
SyntenyMoc04g30170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAGAAAATATGAATTTGTCTCAAGCATGACATGTGTTTTCCTGGCGTCAATCTTATTAGTCGGTGTCTCCACTAGCTGTAGGGCGAAGCAAGACATTCAGCTAAGAGCAGCCAGCAGCAACTAGAGCATCCCGTCTGAAGGCAGAAGGCAGGAAAGCAAGGCAAGTCTGAAGGCAGAAGCTTTAAGAGATAAGGGAGGAAGGGAGGAACAGTATTAGCTGTTGCTCTTATTAGTGCCTTAGCAGGTGTTCCCCTTTACTTTAGGAGGGAGCGAGAAAGAGCTTCAAAAGTCCCGTTCGAAAGAGCTAACTAAGGCCAGGCTTGGCATCCCGTCTGAAGCAAGGCAAAGAAAGCAAGCCCTAAAGTAAGGAAAGGTAGTTCGAAAGGGCGGGATAAGACAAGGCGGCTAGGCTGAAGGCAAGGAAGTCCCGTCTGGCAACTACTGGCTGGCTGTGAACGAGGAGGAGTCAACTAGCGATGCCAACTTCCGAAAGATTATGATTTGAATAAAGATTTCCTTCAAAGGTCAGTTCTTCAAGTTCTTTGAGTTCCATTGCATTAATGAATCCAGCTGGAAAGACCTACACTTACTACCATTTATCAAACTTTCCCTTTTGAATAATAATAAGGTCAGCTTGGGTTCCAAACCTTTTGATATGCGGTCTCGCTATGTTTGCATTCAAAGGTCTTGTGCCTGCGTTATCCAGTCACGTTCCTAACTTCCAAAGAATGAATCTATGAATATGGTAGAGGAGCGAAAGTGGCCGGCGACTCTAACAGTTAGGTTTCGAGAGGGCTATATCGATCTCGGAAACAAGGGAAGAAAGGGAGGAAGGAATGAGATTCTTTATAGCCCTTTCCAGACCTTATGTAATTTCCTTTGGTTGGGTTAGCTTTTTGGTAGGAAAGGCGGTAGTAGAGTTGCGTCAAGTCCTTCGCCTGACTCTACTATTTGTTTTCCAGACAGGGATGCCCATTGTTCCCTGCTCTAATTCCTCCGATTTCCCTTTGCTTTCTTTATTACTTATCGCACGTGCCCAGTCTCAACATCACTTCCCAAACCAAAACAACCTTTCCCAGATCTATGAAAGGCGAAACGCTGAAAGTCCACAACAGGTAACATAAATGAACAAGTTTATTTTGTATTCGAGCTGCTGAGGGCCGGAGCTTGTATGGATACATTACTTCATTGTTATAGGTTCTATGAGGCCTTGCACTAAGCACATACTTGGAGAGGGTCGCGAAGTGTAAAGATCCGGTCTTTGACAATCGTCATAAGAACAGCAAAATCGATTGTGTCTTCGACACTATAACTATAGGCGGGACCTGTTGTAGGATGATCGCCGAGTGGCGTTCTGCTCGATTAGGCGAATGCGAGTGAGGGATAAGCTTTCCCCGTTCGCTAGGAGGGAAACTCGGGAAGAGTTGAGGCAGAAATAG

mRNA sequence

ATGAGAGGGAGCGAGAAAGAGCTTCAAAAGTCCCGTTCGAAAGAGCTAACTAAGGCCAGGCTTGGCATCCCGTCTGAAGCAAGGCAAAGAAAGCAAGCCCTAAACTGGAAAGACCTACACTTACTACCATTTATCAAACTTTCCCTTTTGAATAATAATAAGGTCAGCTTGGGTTCCAAACCTTTTGATATGCGGTCTCGCTATGTTTGCATTCAAAGCTTTTTGGTAGGAAAGGCGGTAGTAGAGTTGCGTCAAGTCCTTCGCCTGACTCTACTATTTGTTTTCCAGACAGGGATGCCCATTGTTCCCTGCTCTAATTCCTCCGATTTCCCTTTGCTTTCTTTATTACTTATCGCACGTGCCCAGTCTCAACATCACTTCCCAAACCAAAACAACCTTTCCCAGATCTATGAAAGGCGAAACGCTGAAAGTCCACAACAGGATGATCGCCGAGTGGCGTTCTGCTCGATTAGGCGAATGCGAGTGAGGGATAAGCTTTCCCCGTTCGCTAGGAGGGAAACTCGGGAAGAGTTGAGGCAGAAATAG

Coding sequence (CDS)

ATGAGAGGGAGCGAGAAAGAGCTTCAAAAGTCCCGTTCGAAAGAGCTAACTAAGGCCAGGCTTGGCATCCCGTCTGAAGCAAGGCAAAGAAAGCAAGCCCTAAACTGGAAAGACCTACACTTACTACCATTTATCAAACTTTCCCTTTTGAATAATAATAAGGTCAGCTTGGGTTCCAAACCTTTTGATATGCGGTCTCGCTATGTTTGCATTCAAAGCTTTTTGGTAGGAAAGGCGGTAGTAGAGTTGCGTCAAGTCCTTCGCCTGACTCTACTATTTGTTTTCCAGACAGGGATGCCCATTGTTCCCTGCTCTAATTCCTCCGATTTCCCTTTGCTTTCTTTATTACTTATCGCACGTGCCCAGTCTCAACATCACTTCCCAAACCAAAACAACCTTTCCCAGATCTATGAAAGGCGAAACGCTGAAAGTCCACAACAGGATGATCGCCGAGTGGCGTTCTGCTCGATTAGGCGAATGCGAGTGAGGGATAAGCTTTCCCCGTTCGCTAGGAGGGAAACTCGGGAAGAGTTGAGGCAGAAATAG

Protein sequence

MRGSEKELQKSRSKELTKARLGIPSEARQRKQALNWKDLHLLPFIKLSLLNNNKVSLGSKPFDMRSRYVCIQSFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSSDFPLLSLLLIARAQSQHHFPNQNNLSQIYERRNAESPQQDDRRVAFCSIRRMRVRDKLSPFARRETREELRQK
Homology
[Close]
BLAST of Moc04g30170 vs. NCBI nr
Match: KAF2589759.1 (hypothetical protein F2Q70_00039457 [Brassica cretica])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 70  CIQSFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           CI  FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 82  CILCFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 120

[Close]
BLAST of Moc04g30170 vs. NCBI nr
Match: CDY45481.1 (BnaCnng12400D [Brassica napus])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 164 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 199

[Close]
BLAST of Moc04g30170 vs. NCBI nr
Match: CDY67690.1 (BnaUnng02370D [Brassica napus])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 250 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 285

[Close]
BLAST of Moc04g30170 vs. NCBI nr
Match: CAF1826852.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 167 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 202

[Close]
BLAST of Moc04g30170 vs. NCBI nr
Match: VDD65114.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 269 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 304

[Close]
BLAST of Moc04g30170 vs. ExPASy TrEMBL
Match: A0A3P6H4Q7 (Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLSC28T60342H PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-05
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 269 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 304

[Close]
BLAST of Moc04g30170 vs. ExPASy TrEMBL
Match: A0A0D2ZQG4 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-05
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 270 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 305

[Close]
BLAST of Moc04g30170 vs. ExPASy TrEMBL
Match: A0A078I6H2 (BnaCnng12400D protein OS=Brassica napus OX=3708 GN=BnaCnng12400D PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-05
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 164 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 199

[Close]
BLAST of Moc04g30170 vs. ExPASy TrEMBL
Match: A0A078JML4 (BnaUnng02370D protein OS=Brassica napus OX=3708 GN=BnaUnng02370D PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-05
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 250 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 285

[Close]
BLAST of Moc04g30170 vs. ExPASy TrEMBL
Match: A0A3P6DCV2 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC48T46267Z PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-05
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 73  SFLVGKAVVELRQVLRLTLLFVFQTGMPIVPCSNSS 109
           +FLVG+AVVELRQVLR+TLL VF  GMPIVPC N S
Sbjct: 250 NFLVGRAVVELRQVLRVTLLLVFLAGMPIVPCDNYS 285

The following BLAST results are available for this feature:
BLAST of Moc04g30170 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF2589759.11.4e-0576.92hypothetical protein F2Q70_00039457 [Brassica cretica][more]
CDY45481.11.5e-0477.78BnaCnng12400D [Brassica napus][more]
CDY67690.11.5e-0477.78BnaUnng02370D [Brassica napus][more]
CAF1826852.11.5e-0477.78unnamed protein product [Brassica napus][more]
VDD65114.11.5e-0477.78unnamed protein product, partial [Brassica oleracea][more]
BLAST of Moc04g30170 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g30170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3P6H4Q77.3e-0577.78Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLSC28T60342... [more]
A0A0D2ZQG47.3e-0577.78Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A078I6H27.3e-0577.78BnaCnng12400D protein OS=Brassica napus OX=3708 GN=BnaCnng12400D PE=4 SV=1[more]
A0A078JML47.3e-0577.78BnaUnng02370D protein OS=Brassica napus OX=3708 GN=BnaUnng02370D PE=4 SV=1[more]
A0A3P6DCV27.3e-0577.78Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRASC48T46267Z PE=4 SV... [more]
BLAST of Moc04g30170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g30170.1Moc04g30170.1mRNA