Moc04g29700 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g29700
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 22057885 .. 22058139 (+)
RNA-Seq Expression	Moc04g29700
Synteny	Moc04g29700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACAAAAACGACCCGAAACGGGACAAGGTGTTGAAGCCTGAGATCATCGATTGGGGGAGACCGGCCCGTGGCGTAACAGGCCGGCCCAAAGAACGGCCTAGCGCCGGGGCAGAGAACGAGGAAAGGGACCGGCGGAAAACCAACTGGGCCGAGAGGGCTCGGTCCCGACCCATGCTCGGTCCCGAACACTTCTCGGTCCCGACCACTTCTCGGTCCCGACCCCTGCTCGGCCCATGGTCTAGCCCATGA

mRNA sequence

ATGGAGAACAAAAACGACCCGAAACGGGACAAGGTGTTGAAGCCTGAGATCATCGATTGGGGGAGACCGGCCCGTGGCGTAACAGGCCGGCCCAAAGAACGGCCTAGCGCCGGGGCAGAGAACGAGGAAAGGGACCGGCGGAAAACCAACTGGGCCGAGAGGGCTCGGTCCCGACCCATGCTCGGTCCCGAACACTTCTCGGTCCCGACCACTTCTCGGTCCCGACCCCTGCTCGGCCCATGGTCTAGCCCATGA

Coding sequence (CDS)

ATGGAGAACAAAAACGACCCGAAACGGGACAAGGTGTTGAAGCCTGAGATCATCGATTGGGGGAGACCGGCCCGTGGCGTAACAGGCCGGCCCAAAGAACGGCCTAGCGCCGGGGCAGAGAACGAGGAAAGGGACCGGCGGAAAACCAACTGGGCCGAGAGGGCTCGGTCCCGACCCATGCTCGGTCCCGAACACTTCTCGGTCCCGACCACTTCTCGGTCCCGACCCCTGCTCGGCCCATGGTCTAGCCCATGA

Protein sequence

MENKNDPKRDKVLKPEIIDWGRPARGVTGRPKERPSAGAENEERDRRKTNWAERARSRPMLGPEHFSVPTTSRSRPLLGPWSSP

Homology

[Close]

BLAST of Moc04g29700 vs. NCBI nr
Match: XP_022156048.1 (uncharacterized protein LOC111023016 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MENKNDPKRDKVLKPEIIDWGRPARGVTGRPKERPSAGAENEERDRRKTNWAERARSRPM 60
           MENKNDPKRDK LK EIIDWGRPAR VTGRPKERP+AGA+NEE D R+TN AERARSRPM
Sbjct: 297 MENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAGAKNEESDWRRTNRAERARSRPM 356

Query: 61  LGP 64
           LGP
Sbjct: 357 LGP 359

[Close]

BLAST of Moc04g29700 vs. ExPASy TrEMBL
Match: A0A6J1DPJ5 (uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023016 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1   MENKNDPKRDKVLKPEIIDWGRPARGVTGRPKERPSAGAENEERDRRKTNWAERARSRPM 60
           MENKNDPKRDK LK EIIDWGRPAR VTGRPKERP+AGA+NEE D R+TN AERARSRPM
Sbjct: 297 MENKNDPKRDKELKSEIIDWGRPARDVTGRPKERPNAGAKNEESDWRRTNRAERARSRPM 356

Query: 61  LGP 64
           LGP
Sbjct: 357 LGP 359

The following BLAST results are available for this feature:

BLAST of Moc04g29700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156048.1	3.4e-20	85.71	uncharacterized protein LOC111023016 [Momordica charantia]	[more]

BLAST of Moc04g29700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g29700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPJ5	1.7e-20	85.71	uncharacterized protein LOC111023016 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Moc04g29700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g29700.1	Moc04g29700.1	mRNA