Moc04g29550 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g29550
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein SENSITIVITY TO RED LIGHT REDUCED 1
Location	chr4: 21944820 .. 21945653 (-)
RNA-Seq Expression	Moc04g29550
Synteny	Moc04g29550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGTCGGCAGAAACTATCACCATTCCGGATCAGTCAAATAATAGCGACTGGACTGTTGTTTTGCCTCGTCGTGGCAAGCAGAGGAAGAATTTGCCGAAGCTCAGAAATCAAGAGGAGCAGCGGGCGTGGTCTCCCACTGATCAGGCCAGCGATACAGTCAGAGAATCGAAATTGTTGCAGAAGATGCAAATCTGTATTGAGAAGGTTCAGAGCTCCCAATTTTATCAAACCCTTGTTGATGATCTCGGAACGATGCCAGCATTGGAATTCTTGAATAGGGTTTTGGCCTCGGAGCCAAATATGGGGATGGTTATCTACGGCATAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCAATATTGATGAAAAGGAAATTTGGTTGGATTGGAAGTTTAGAGGTGTTCGATCCAATTCTTTCTGCGACCGAGTGTCGGGTAATGGAGTCCTTTGGTTGTTCCGTTCTATCAGAAAATGAGCAAGGGCGGCGATGTGCGCAGAAGCCAACACTGTTTTTCATGCCCCACTGCGAGGTAAATTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGACCTATGAGGAGTTCGTATCAGAATTCAAAGGCTCACAACTTGTTGATTCGGCGAAGTACGTCTTGGCCACTAGAAAATTCACAAGCGAGATCAAGATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATAGTTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCAACAGAGCTGCAATTCACAGAATTTTAA

mRNA sequence

ATGGCTGCGTCGGCAGAAACTATCACCATTCCGGATCAGTCAAATAATAGCGACTGGACTGTTGTTTTGCCTCGTCGTGGCAAGCAGAGGAAGAATTTGCCGAAGCTCAGAAATCAAGAGGAGCAGCGGGCGTGGTCTCCCACTGATCAGGCCAGCGATACAGTCAGAGAATCGAAATTGTTGCAGAAGATGCAAATCTGTATTGAGAAGGTTCAGAGCTCCCAATTTTATCAAACCCTTGTTGATGATCTCGGAACGATGCCAGCATTGGAATTCTTGAATAGGGTTTTGGCCTCGGAGCCAAATATGGGGATGGTTATCTACGGCATAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCAATATTGATGAAAAGGAAATTTGGTTGGATTGGAAGTTTAGAGGTGTTCGATCCAATTCTTTCTGCGACCGAGTGTCGGGTAATGGAGTCCTTTGGTTGTTCCGTTCTATCAGAAAATGAGCAAGGGCGGCGATGTGCGCAGAAGCCAACACTGTTTTTCATGCCCCACTGCGAGGTAAATTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGACCTATGAGGAGTTCGTATCAGAATTCAAAGGCTCACAACTTGTTGATTCGGCGAAGTACGTCTTGGCCACTAGAAAATTCACAAGCGAGATCAAGATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATAGTTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCAACAGAGCTGCAATTCACAGAATTTTAA

Coding sequence (CDS)

ATGGCTGCGTCGGCAGAAACTATCACCATTCCGGATCAGTCAAATAATAGCGACTGGACTGTTGTTTTGCCTCGTCGTGGCAAGCAGAGGAAGAATTTGCCGAAGCTCAGAAATCAAGAGGAGCAGCGGGCGTGGTCTCCCACTGATCAGGCCAGCGATACAGTCAGAGAATCGAAATTGTTGCAGAAGATGCAAATCTGTATTGAGAAGGTTCAGAGCTCCCAATTTTATCAAACCCTTGTTGATGATCTCGGAACGATGCCAGCATTGGAATTCTTGAATAGGGTTTTGGCCTCGGAGCCAAATATGGGGATGGTTATCTACGGCATAGGAAGCATTGAGAATTATGAAAATCCTCGATTGCAGCTCAGTCTTGCAATATTGATGAAAAGGAAATTTGGTTGGATTGGAAGTTTAGAGGTGTTCGATCCAATTCTTTCTGCGACCGAGTGTCGGGTAATGGAGTCCTTTGGTTGTTCCGTTCTATCAGAAAATGAGCAAGGGCGGCGATGTGCGCAGAAGCCAACACTGTTTTTCATGCCCCACTGCGAGGTAAATTTGTACAACAATCTTTTACAGGAAAATTGGACGGTGGAGCTGTTGAATCATGTTGTGCTGTTTGGAAATAGCTTTGAGACCTATGAGGAGTTCGTATCAGAATTCAAAGGCTCACAACTTGTTGATTCGGCGAAGTACGTCTTGGCCACTAGAAAATTCACAAGCGAGATCAAGATCAAGACACTTTCAGATGATTATTTTGGTGCTTTCCATAGTTCAAGTTGGCAATTTTTCAGCCCTGTTTCACCAACAGAGCTGCAATTCACAGAATTTTAA

Protein sequence

MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTEF

Homology

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BLAST of Moc04g29550 vs. NCBI nr
Match: XP_022141416.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1 [Momordica charantia])

HSP 1 Score: 557.0 bits (1434), Expect = 9.2e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL
Sbjct: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR
Sbjct: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM
Sbjct: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT
Sbjct: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTEF 278
           SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTEF
Sbjct: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTEF 277

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BLAST of Moc04g29550 vs. NCBI nr
Match: KAG6579107.1 (Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 480.7 bits (1236), Expect = 8.4e-132
Identity = 231/276 (83.70%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRG+QRK  PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LNRVLASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVM SFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMASFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

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BLAST of Moc04g29550 vs. NCBI nr
Match: XP_023550156.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550157.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550158.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023550159.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131
Identity = 230/276 (83.33%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRG+QRK  PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQF++TL+D+LGT P LE LNR LASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFFRTLIDELGTTPVLESLNRALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYNNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

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BLAST of Moc04g29550 vs. NCBI nr
Match: XP_022939448.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939449.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939450.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939451.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939452.1 protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata])

HSP 1 Score: 479.2 bits (1232), Expect = 2.4e-131
Identity = 230/276 (83.33%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRG+QRK  PKLRN+E+QR WSPTDQA+D +RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LNRVLASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LY+NLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of Moc04g29550 vs. NCBI nr
Match: XP_023553043.1 (protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP_023553053.1 protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.9 bits (1213), Expect = 3.9e-129
Identity = 227/276 (82.25%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           M ASA+T+ IPDQSNN DWTVVLPRRG+QRKNLPKLR QE+QR WSP+DQA+DT+RESKL
Sbjct: 1   MTASAKTLAIPDQSNNGDWTVVLPRRGRQRKNLPKLRKQEDQRTWSPSDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           L KM+ICIEKV+SSQFY+TLVD+L TMP LE LNRVLASE  MGMVIYG+GSIENYENPR
Sbjct: 61  LHKMEICIEKVESSQFYRTLVDELETMPVLESLNRVLASESKMGMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIG LEVFDPILSA ECRV+ESFGCS+LS NEQGRRCAQKPT+FFM
Sbjct: 121 LQLSLAILLKRKFSWIGRLEVFDPILSAIECRVIESFGCSILSVNEQGRRCAQKPTMFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWT ELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKF+
Sbjct: 181 PHCEAELYNNLLQENWTGELLNHVVLFGNSFEIYEQFVSEFKNSPVVDSAKYILASRKFS 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKTLSD+YFGAFH SSW FFS V PTELQFT+
Sbjct: 241 REIKIKTLSDEYFGAFHDSSWHFFSTVLPTELQFTD 276

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BLAST of Moc04g29550 vs. ExPASy Swiss-Prot
Match: Q8GWZ6 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SRR1 PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-72
Identity = 138/268 (51.49%), Postives = 190/268 (70.90%), Query Frame = 0


Query: 9   TIPDQSNNSDWTVVLP---RRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ 68
           T+ + S++ +W VVLP   R+G++RK  PK + +EE++ W   D   D  R+++L QKM+
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSL 128
           I ++K++SS FY   ++ L +      +  VL SE  + MV+YGIGSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILMKRKFGWIG-SLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCE 188
           AILMKR+F W+G ++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPTLFFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 VNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIK 248
            NLY+NLLQ NW ++ L+ + LFGNSF+ YEE VS    ++++ + K ++A ++ TSE  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTLSDDYFGAFHSSSWQFFSPVSPTEL 273
           I+T SDDYF AFH SSW FFS    +EL
Sbjct: 244 IETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of Moc04g29550 vs. ExPASy Swiss-Prot
Match: Q8K2M3 (SRR1-like protein OS=Mus musculus OX=10090 GN=Srrd PE=2 SV=4)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-20
Identity = 76/218 (34.86%), Postives = 111/218 (50.92%), Query Frame = 0


Query: 19  WTVVLPRRGKQRKNLPKLRNQEEQRAWSPTD---------QASDTVRE----SKLLQKMQ 78
           W+ V PRR K+     + R  E  RA    D         +A + +R     S  L+ + 
Sbjct: 9   WSAVAPRRRKRAAG-RRPRPGEGPRAEPEADGEAVLRRLREAEEDLRISDFCSSALETIT 68

Query: 79  ICIEKVQSSQFYQTLVDDLGTMPALEFL-----NRVLASEPNMGMVIYGIGSIENYENPR 138
            C+ K Q  Q  Q L + LG +     L       + +S  ++  V YG+G+  +    R
Sbjct: 69  ECLRK-QLEQL-QPLTEALGRLHLGSSLPSASQEPLASSASHVKCVCYGLGTFASCPTAR 128

Query: 139 LQLSLAILMKRKFGWIGS-LEVFDPILSATECRVMESFGCSVLSENEQGRRCAQ-KPTLF 198
           +QL+  +L   K     S   V+DP+ S TE  V+ S G +VLSENE+G+R  Q +PT+F
Sbjct: 129 IQLAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVLTSLGVTVLSENEEGKRSVQGQPTVF 188

Query: 199 FMPHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEE 217
           +MPHC   LYNNLL  NW+ + L+ V++ GNSF   EE
Sbjct: 189 YMPHCGTALYNNLLWSNWSADALSRVLIIGNSFRGLEE 223

[Close]

BLAST of Moc04g29550 vs. ExPASy Swiss-Prot
Match: Q9UH36 (SRR1-like protein OS=Homo sapiens OX=9606 GN=SRRD PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.4e-18
Identity = 61/168 (36.31%), Postives = 89/168 (52.98%), Query Frame = 0


Query: 106 VIYGIGSIENYENPRLQLSLAILMKRKFGWIGS-LEVFDPILSATECRVMESFGCSVLSE 165
           V YGIG+       R QL+  +L+  K     S   V+DP+ S  E  V+ + G +VLSE
Sbjct: 142 VCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVLSE 201

Query: 166 NEQGRRCAQ-KPTLFFMPHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKG 225
           NE+G+R  + +PT+F+M HC   LYNNLL  NW+V+ L+ +V+ GNSF+  EE       
Sbjct: 202 NEEGKRSIRGEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEE---RLLA 261

Query: 226 SQLVDSAKYVLATRKFTSEIKIKTLSDDYFGAFHSSSWQFFSPVSPTE 272
             L  +  Y+    K   E++    S  Y   F+ +S  +F PV   E
Sbjct: 262 RILQKNYPYIAKILKGLEELEFPQTS-QYMDIFNDTSVHWF-PVQKLE 304

[Close]

BLAST of Moc04g29550 vs. ExPASy Swiss-Prot
Match: Q9VEB5 (SRR1-like protein OS=Drosophila melanogaster OX=7227 GN=CG7988 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.2e-09
Identity = 54/202 (26.73%), Postives = 91/202 (45.05%), Query Frame = 0


Query: 14  SNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ-ICIEKVQ 73
           ++  D+ VV  ++   RK    LR ++  ++ S        V   K   +++ +C E  Q
Sbjct: 3   NSGEDFQVVTRKKWMARK---CLRRRDRHKSESDYLIDCPDVNVEKFQPRLENLCTEMCQ 62

Query: 74  SSQFYQTLVDDLGTMPALEFLNRVLAS--EPNMGMVIYGIGSIENYENPRLQLSLAILMK 133
           S  F          + A+E L + L    +P   +V  G+G      +   Q +  I + 
Sbjct: 63  SDYF----------LVAMEALQQQLEGIRKPLERIVCLGLGPFSRTYHALHQAAFVIGLH 122

Query: 134 RKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCEVNLYNN 193
           R    I     FDP+   +E  ++  F   ++S++  G+  A  PTL+++PHC   L +N
Sbjct: 123 RHHK-IREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEATVPTLYYLPHCPYALMHN 182

Query: 194 LLQENWTVELLNHVVLFGNSFE 213
           +L  NW  E L +V L  NSFE
Sbjct: 183 ILWSNWKRETLPNVFLISNSFE 190

[Close]

BLAST of Moc04g29550 vs. ExPASy TrEMBL
Match: A0A6J1CJ43 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Momordica charantia OX=3673 GN=LOC111011826 PE=3 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.5e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL
Sbjct: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR
Sbjct: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM
Sbjct: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT
Sbjct: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTEF 278
           SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTEF
Sbjct: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTEF 277

[Close]

BLAST of Moc04g29550 vs. ExPASy TrEMBL
Match: A0A6J1FGU7 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC111445349 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.2e-131
Identity = 230/276 (83.33%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ +PDQSNN DWTVVLPRRG+QRK  PKLRN+E+QR WSPTDQA+D +RESKL
Sbjct: 1   MAASAKTLAVPDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDAIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LNRVLASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNRVLASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCSVLS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSVLSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LY+NLLQENWTVELLNHVVLFGNSFE YE+FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAELYDNLLQENWTVELLNHVVLFGNSFEIYEQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of Moc04g29550 vs. ExPASy TrEMBL
Match: A0A6J1JWJ0 (protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111488981 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.5e-129
Identity = 226/276 (81.88%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+ + + DQSNN DWTVVLPRRG+QRK  PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKNLAVLDQSNNGDWTVVLPRRGRQRKTFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+KV+SSQFY+TL+D+LGT P LE LN+ LASE  M MVIYG+GSIENYENPR
Sbjct: 61  LQKMEICIKKVESSQFYRTLIDELGTTPVLESLNKALASESKMEMVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WIGSLEVFDPILSATECRVMESFGCS+LS NE+GRRCAQK TLFFM
Sbjct: 121 LQLSLAILLKRKFSWIGSLEVFDPILSATECRVMESFGCSILSVNEEGRRCAQKATLFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENWTVELLNHVVLFGNSFE Y +FVSEFK S +VDSAKY+LA+RKFT
Sbjct: 181 PHCEAGLYNNLLQENWTVELLNHVVLFGNSFEIYGQFVSEFKSSPVVDSAKYILASRKFT 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKTLSDDYFGAFH SSW FFSPVSPTELQFT+
Sbjct: 241 REIKIKTLSDDYFGAFHDSSWHFFSPVSPTELQFTD 276

[Close]

BLAST of Moc04g29550 vs. ExPASy TrEMBL
Match: A0A0A0KRU2 (SRR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G457240 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 7.4e-126
Identity = 219/276 (79.35%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T++IPDQSN+ DWTVVLPRRGKQ+K  PKLR +E+QR WSPTDQA+DT+RESKL
Sbjct: 129 MAASAKTVSIPDQSNSGDWTVVLPRRGKQKKTFPKLRIREDQRTWSPTDQANDTIRESKL 188

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM+ICI+K+++SQFYQTLV++L TMP LE LNRVL SE  MGMV+YG+GSIENYENPR
Sbjct: 189 LQKMEICIKKLENSQFYQTLVEELETMPFLESLNRVLGSESKMGMVVYGVGSIENYENPR 248

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WI SLEVFDPILSATECR+MESFGCSVLS NEQGRRCA+KPT+FFM
Sbjct: 249 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSFNEQGRRCAEKPTMFFM 308

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENW V LLNH+VLFGNSFE YE+FVSEFK S +VDS+K++LA+RKF 
Sbjct: 309 PHCEAELYNNLLQENWKVGLLNHIVLFGNSFEIYEQFVSEFKNSPVVDSSKFILASRKFI 368

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKT+SDDYFGAFH SSWQFFSPVSP ELQF +
Sbjct: 369 REIKIKTVSDDYFGAFHDSSWQFFSPVSPLELQFID 404

[Close]

BLAST of Moc04g29550 vs. ExPASy TrEMBL
Match: A0A5A7VEC7 (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00470 PE=3 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.7e-125
Identity = 217/276 (78.62%), Postives = 250/276 (90.58%), Query Frame = 0


Query: 1   MAASAETITIPDQSNNSDWTVVLPRRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKL 60
           MAASA+T+ IPDQSNN DWTVVLPRRGKQRKN PKLRN+E+QR WSPTDQA+DT+RESKL
Sbjct: 1   MAASAKTVAIPDQSNNGDWTVVLPRRGKQRKNFPKLRNREDQRTWSPTDQANDTIRESKL 60

Query: 61  LQKMQICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPR 120
           LQKM++CI+K++SSQFY+TLV++L T+P LE LNRVL SE  MG+VIYG+GSIENYENPR
Sbjct: 61  LQKMEMCIKKLESSQFYRTLVEELETVPFLESLNRVLDSESKMGVVIYGVGSIENYENPR 120

Query: 121 LQLSLAILMKRKFGWIGSLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFM 180
           LQLSLAIL+KRKF WI SLEVFDPILSATECR+MESFGCSVLS NEQGRRCA+KPT+FFM
Sbjct: 121 LQLSLAILLKRKFSWIESLEVFDPILSATECRLMESFGCSVLSVNEQGRRCAEKPTMFFM 180

Query: 181 PHCEVNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFT 240
           PHCE  LYNNLLQENW V+LLNH++LFGNSFE YE+FVSEFK S +VDS+ ++LA+RKF 
Sbjct: 181 PHCEAELYNNLLQENWKVKLLNHIMLFGNSFEIYEQFVSEFKNSPVVDSSNFILASRKFV 240

Query: 241 SEIKIKTLSDDYFGAFHSSSWQFFSPVSPTELQFTE 277
            EIKIKT+SDDYFGAFH SSW FFSPVSP EL+F +
Sbjct: 241 REIKIKTVSDDYFGAFHDSSWHFFSPVSPLELKFID 276

[Close]

BLAST of Moc04g29550 vs. TAIR 10
Match: AT5G59560.1 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 272.7 bits (696), Expect = 3.2e-73
Identity = 138/268 (51.49%), Postives = 190/268 (70.90%), Query Frame = 0


Query: 9   TIPDQSNNSDWTVVLP---RRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ 68
           T+ + S++ +W VVLP   R+G++RK  PK + +EE++ W   D   D  R+++L QKM+
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSL 128
           I ++K++SS FY   ++ L +      +  VL SE  + MV+YGIGSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILMKRKFGWIG-SLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCE 188
           AILMKR+F W+G ++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPTLFFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 VNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIK 248
            NLY+NLLQ NW ++ L+ + LFGNSF+ YEE VS    ++++ + K ++A ++ TSE  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTLSDDYFGAFHSSSWQFFSPVSPTEL 273
           I+T SDDYF AFH SSW FFS    +EL
Sbjct: 244 IETESDDYFAAFHDSSWHFFSSGIDSEL 269

[Close]

BLAST of Moc04g29550 vs. TAIR 10
Match: AT5G59560.2 (sensitivity to red light reduced protein (SRR1) )

HSP 1 Score: 272.7 bits (696), Expect = 3.2e-73
Identity = 138/268 (51.49%), Postives = 190/268 (70.90%), Query Frame = 0


Query: 9   TIPDQSNNSDWTVVLP---RRGKQRKNLPKLRNQEEQRAWSPTDQASDTVRESKLLQKMQ 68
           T+ + S++ +W VVLP   R+G++RK  PK + +EE++ W   D   D  R+++L QKM+
Sbjct: 4   TVKNSSSDGEWKVVLPSKGRQGRRRKPKPKGQAEEEEQPWKSDDLEIDPQRQARLKQKME 63

Query: 69  ICIEKVQSSQFYQTLVDDLGTMPALEFLNRVLASEPNMGMVIYGIGSIENYENPRLQLSL 128
           I ++K++SS FY   ++ L +      +  VL SE  + MV+YGIGSIE+YE+PR QLS+
Sbjct: 64  ISLKKIESSSFYTAFLEQLKSPEVSNQIRLVLGSETQLQMVMYGIGSIESYESPRFQLSI 123

Query: 129 AILMKRKFGWIG-SLEVFDPILSATECRVMESFGCSVLSENEQGRRCAQKPTLFFMPHCE 188
           AILMKR+F W+G ++EVFDP+LSATE   +ES GCSVLS NEQ RR A KPTLFFMPHCE
Sbjct: 124 AILMKREFDWVGDNIEVFDPVLSATESSYLESLGCSVLSVNEQARREALKPTLFFMPHCE 183

Query: 189 VNLYNNLLQENWTVELLNHVVLFGNSFETYEEFVSEFKGSQLVDSAKYVLATRKFTSEIK 248
            NLY+NLLQ NW ++ L+ + LFGNSF+ YEE VS    ++++ + K ++A ++ TSE  
Sbjct: 184 ANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVS--FDAEVICATKRIIAAQRVTSEFA 243

Query: 249 IKTLSDDYFGAFHSSSWQFFSPVSPTEL 273
           I+T SDDYF AFH SSW FFS    +EL
Sbjct: 244 IETESDDYFAAFHDSSWHFFSSGIDSEL 269

The following BLAST results are available for this feature:

BLAST of Moc04g29550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141416.1	9.2e-155	100.00	protein SENSITIVITY TO RED LIGHT REDUCED 1 [Momordica charantia]	[more]
KAG6579107.1	8.4e-132	83.70	Protein SENSITIVITY TO RED LIGHT REDUCED 1, partial [Cucurbita argyrosperma subs...	[more]
XP_023550156.1	1.4e-131	83.33	protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022939448.1	2.4e-131	83.33	protein SENSITIVITY TO RED LIGHT REDUCED 1 [Cucurbita moschata] >XP_022939449.1 ...	[more]
XP_023553043.1	3.9e-129	82.25	protein SENSITIVITY TO RED LIGHT REDUCED 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Moc04g29550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWZ6	4.6e-72	51.49	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q8K2M3	2.4e-20	34.86	SRR1-like protein OS=Mus musculus OX=10090 GN=Srrd PE=2 SV=4	[more]
Q9UH36	8.4e-18	36.31	SRR1-like protein OS=Homo sapiens OX=9606 GN=SRRD PE=2 SV=1	[more]
Q9VEB5	7.2e-09	26.73	SRR1-like protein OS=Drosophila melanogaster OX=7227 GN=CG7988 PE=1 SV=1	[more]

BLAST of Moc04g29550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJ43	4.5e-155	100.00	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1FGU7	1.2e-131	83.33	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JWJ0	2.5e-129	81.88	protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0KRU2	7.4e-126	79.35	SRR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G457240 PE=3 S...	[more]
A0A5A7VEC7	1.7e-125	78.62	Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Moc04g29550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59560.1	3.2e-73	51.49	sensitivity to red light reduced protein (SRR1)	[more]
AT5G59560.2	3.2e-73	51.49	sensitivity to red light reduced protein (SRR1)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012942	SRR1-like domain	PFAM	PF07985	SRR1	coord: 105..157 e-value: 9.4E-11 score: 41.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	PANTHER	PTHR28626:SF3	SRR1-LIKE PROTEIN	coord: 14..266
IPR040044	SRR1-like protein	PANTHER	PTHR28626	SRR1-LIKE PROTEIN	coord: 14..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g29550.1	Moc04g29550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus