Moc04g29010 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g29010
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIleal sodium/bile acid cotransporter, putative
Locationchr4: 21516071 .. 21516592 (-)
RNA-Seq ExpressionMoc04g29010
SyntenyMoc04g29010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCTCCCTAGGCAGCATCAATGAACTCTCATCCTTCATCAATGCACTCTCATCCCTCATCAATGCACTCTCATCCCTCATCAATGCAATCAATGGAGAAAATTCTGGAATCTGTAGTTTTACCTGGAGTAGGGGAGGGGGAACATCCACATCTTCAGATTGCCTACCCATTTGCAACAGTGTGCAGAGGCCTCAGAGTCTTGGGAAGATATTTCTTGGTCGGACTTTTCGGGCAATTGTAGTAGTGTTGTCCACCAGCTTGCCCAGTTCATCCCCTCCACTTCCTACAGTTCTTTTTGGAGCTGCTAAGTTGGTTAGCTTTGTAGTTTCCCTTGCTGGAAATTGCCTTCAAAATGAACACCCGAGAATTGCAAATTTGTTAGAAAAGATCGGTGCTCTTCTTGTTGCTGTTGGTGTCTGCGTCATAACAAGTCTTCTTGTTCCTCAGAACTTGGGTTGGATCTGTTGGCTGGCATGTGTCTCCATCGTGCTAGCCTTTATTATATCATCCAATTGA

mRNA sequence

ATGGCATCCTCCCTAGGCAGCATCAATGAACTCTCATCCTTCATCAATGCACTCTCATCCCTCATCAATGCACTCTCATCCCTCATCAATGCAATCAATGGAGAAAATTCTGGAATCTGTAGTTTTACCTGGAGTAGGGGAGGGGGAACATCCACATCTTCAGATTGCCTACCCATTTGCAACAGTGTGCAGAGGCCTCAGAGTCTTGGGAAGATATTTCTTGGTCGGACTTTTCGGGCAATTGTAGTAGTGTTGTCCACCAGCTTGCCCAGTTCATCCCCTCCACTTCCTACAGTTCTTTTTGGAGCTGCTAAGTTGGTTAGCTTTGTAGTTTCCCTTGCTGGAAATTGCCTTCAAAATGAACACCCGAGAATTGCAAATTTGTTAGAAAAGATCGGTGCTCTTCTTGTTGCTGTTGGTGTCTGCGTCATAACAAGTCTTCTTGTTCCTCAGAACTTGGGTTGGATCTGTTGGCTGGCATGTGTCTCCATCGTGCTAGCCTTTATTATATCATCCAATTGA

Coding sequence (CDS)

ATGGCATCCTCCCTAGGCAGCATCAATGAACTCTCATCCTTCATCAATGCACTCTCATCCCTCATCAATGCACTCTCATCCCTCATCAATGCAATCAATGGAGAAAATTCTGGAATCTGTAGTTTTACCTGGAGTAGGGGAGGGGGAACATCCACATCTTCAGATTGCCTACCCATTTGCAACAGTGTGCAGAGGCCTCAGAGTCTTGGGAAGATATTTCTTGGTCGGACTTTTCGGGCAATTGTAGTAGTGTTGTCCACCAGCTTGCCCAGTTCATCCCCTCCACTTCCTACAGTTCTTTTTGGAGCTGCTAAGTTGGTTAGCTTTGTAGTTTCCCTTGCTGGAAATTGCCTTCAAAATGAACACCCGAGAATTGCAAATTTGTTAGAAAAGATCGGTGCTCTTCTTGTTGCTGTTGGTGTCTGCGTCATAACAAGTCTTCTTGTTCCTCAGAACTTGGGTTGGATCTGTTGGCTGGCATGTGTCTCCATCGTGCTAGCCTTTATTATATCATCCAATTGA

Protein sequence

MASSLGSINELSSFINALSSLINALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQSLGKIFLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIISSN
Homology
BLAST of Moc04g29010 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-24
Identity = 73/116 (62.93%), Postives = 81/116 (69.83%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP------QSLGKIFLG 81
           +NALSS I AIN  N GI SFTW  GGGTST SDCLPIC  +QRP      QSLGK  LG
Sbjct: 12  MNALSSFITAINERNLGISSFTW--GGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILG 71

Query: 82  RTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEK 132
            TF+A V+ L  SLPSS P LPT+LFGAA L+SF VS AG  LQ  +PR+A L EK
Sbjct: 72  LTFQA-VLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMALLFEK 124

BLAST of Moc04g29010 vs. NCBI nr
Match: KGN49806.1 (hypothetical protein Csa_004683 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 75/155 (48.39%), Postives = 91/155 (58.71%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
           +N L+SLI A+   N GI S TW   GG   +SDCLPI   +QRP        G  FL  
Sbjct: 13  MNKLNSLIFAVTNRNPGISSCTW---GG--AASDCLPIYIKMQRPSPVNSPQFGNTFLSL 72

Query: 82  TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
           TF+AIV +  +  PSSS PLP+ LF A  L SF+ S  G  LQ   P+ A LL+  GAL 
Sbjct: 73  TFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALF 132

Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
            A+G C+I SLL+  N  WICWLA   I+ AFIIS
Sbjct: 133 AAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIIS 162

BLAST of Moc04g29010 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 75/159 (47.17%), Postives = 95/159 (59.75%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP---------QSLGKI 81
           +N L S I AIN  N  I S               LPIC ++QRP          ++GK 
Sbjct: 1   MNELYSFITAINERNPEINS---------------LPICITMQRPSPANSSKTENNVGKT 60

Query: 82  FLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKI 141
            LG TF+A++ +  TS P+SSPPL T LF AA L+SF VS AG  LQN  PRIA L EKI
Sbjct: 61  ILGLTFQAVLALFITS-PNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKI 120

Query: 142 GALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
           GAL+ A+GVC++ SLL+ QN  WI WLA    ++AF++S
Sbjct: 121 GALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLS 143

BLAST of Moc04g29010 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 73/170 (42.94%), Postives = 97/170 (57.06%), Query Frame = 0

Query: 11  LSSFINALSSLINALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPIC---------N 70
           + S    +S  +N L SLI +IN  N  I               + LPIC         N
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEI---------------NGLPICIIMQTASPAN 60

Query: 71  SVQRPQSLGKIFLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNE 130
           S +   ++G   LG TF+A++ +  TS  +SSPPL T LFGAA L+SF VS  G  LQ+ 
Sbjct: 61  SSKTENNVGTTILGLTFQAVLALFITS-STSSPPLLTHLFGAAVLISFAVSFPGVFLQDG 120

Query: 131 HPRIANLLEKIGALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
            PRIA L EKIGAL+ A+GVC++ SLL+ QN  WI WLAC   ++AF++S
Sbjct: 121 FPRIALLFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLS 154

BLAST of Moc04g29010 vs. NCBI nr
Match: KAA0050244.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98162.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 69/155 (44.52%), Postives = 88/155 (56.77%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
           +N L S I A+   N GI S TW      + +SDCLPI   +QRP        G  F+  
Sbjct: 13  MNELYSFITAVTNRNPGISSCTWG-----TAASDCLPIYIKMQRPSPVNSPQFGNTFVSS 72

Query: 82  TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
            F+AI + L  +LP S PPL + L G   L +FV S  G  LQ   P+IA+LL+  GALL
Sbjct: 73  NFQAI-LGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGALL 132

Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
            A+GVC++ S L+  NL WI WLAC  I+ AFI S
Sbjct: 133 AAIGVCIMGSPLLHPNLTWIRWLACGLILPAFITS 160

BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 73/116 (62.93%), Postives = 81/116 (69.83%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP------QSLGKIFLG 81
           +NALSS I AIN  N GI SFTW  GGGTST SDCLPIC  +QRP      QSLGK  LG
Sbjct: 12  MNALSSFITAINERNLGISSFTW--GGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILG 71

Query: 82  RTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEK 132
            TF+A V+ L  SLPSS P LPT+LFGAA L+SF VS AG  LQ  +PR+A L EK
Sbjct: 72  LTFQA-VLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMALLFEK 124

BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.3e-23
Identity = 75/155 (48.39%), Postives = 91/155 (58.71%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
           +N L+SLI A+   N GI S TW   GG   +SDCLPI   +QRP        G  FL  
Sbjct: 13  MNKLNSLIFAVTNRNPGISSCTW---GG--AASDCLPIYIKMQRPSPVNSPQFGNTFLSL 72

Query: 82  TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
           TF+AIV +  +  PSSS PLP+ LF A  L SF+ S  G  LQ   P+ A LL+  GAL 
Sbjct: 73  TFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALF 132

Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
            A+G C+I SLL+  N  WICWLA   I+ AFIIS
Sbjct: 133 AAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIIS 162

BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-23
Identity = 75/159 (47.17%), Postives = 95/159 (59.75%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP---------QSLGKI 81
           +N L S I AIN  N  I S               LPIC ++QRP          ++GK 
Sbjct: 1   MNELYSFITAINERNPEINS---------------LPICITMQRPSPANSSKTENNVGKT 60

Query: 82  FLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKI 141
            LG TF+A++ +  TS P+SSPPL T LF AA L+SF VS AG  LQN  PRIA L EKI
Sbjct: 61  ILGLTFQAVLALFITS-PNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKI 120

Query: 142 GALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
           GAL+ A+GVC++ SLL+ QN  WI WLA    ++AF++S
Sbjct: 121 GALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLS 143

BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.8e-20
Identity = 73/170 (42.94%), Postives = 97/170 (57.06%), Query Frame = 0

Query: 11  LSSFINALSSLINALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPIC---------N 70
           + S    +S  +N L SLI +IN  N  I               + LPIC         N
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEI---------------NGLPICIIMQTASPAN 60

Query: 71  SVQRPQSLGKIFLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNE 130
           S +   ++G   LG TF+A++ +  TS  +SSPPL T LFGAA L+SF VS  G  LQ+ 
Sbjct: 61  SSKTENNVGTTILGLTFQAVLALFITS-STSSPPLLTHLFGAAVLISFAVSFPGVFLQDG 120

Query: 131 HPRIANLLEKIGALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
            PRIA L EKIGAL+ A+GVC++ SLL+ QN  WI WLAC   ++AF++S
Sbjct: 121 FPRIALLFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLS 154

BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match: A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-19
Identity = 69/155 (44.52%), Postives = 88/155 (56.77%), Query Frame = 0

Query: 22  INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
           +N L S I A+   N GI S TW      + +SDCLPI   +QRP        G  F+  
Sbjct: 13  MNELYSFITAVTNRNPGISSCTWG-----TAASDCLPIYIKMQRPSPVNSPQFGNTFVSS 72

Query: 82  TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
            F+AI + L  +LP S PPL + L G   L +FV S  G  LQ   P+IA+LL+  GALL
Sbjct: 73  NFQAI-LGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGALL 132

Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
            A+GVC++ S L+  NL WI WLAC  I+ AFI S
Sbjct: 133 AAIGVCIMGSPLLHPNLTWIRWLACGLILPAFITS 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022146444.14.7e-2462.93uncharacterized protein LOC111015658 [Momordica charantia][more]
KGN49806.16.8e-2348.39hypothetical protein Csa_004683 [Cucumis sativus][more]
KAA0050246.11.2e-2247.17putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KGN49803.11.2e-1942.94hypothetical protein Csa_004681 [Cucumis sativus][more]
KAA0050244.11.3e-1844.52putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CY582.3e-2462.93uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0KQ033.3e-2348.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
A0A5A7U7U15.7e-2347.17Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJN85.8e-2042.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A5D3BEH86.5e-1944.52Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g29010.1Moc04g29010.1mRNA