Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCTCCCTAGGCAGCATCAATGAACTCTCATCCTTCATCAATGCACTCTCATCCCTCATCAATGCACTCTCATCCCTCATCAATGCAATCAATGGAGAAAATTCTGGAATCTGTAGTTTTACCTGGAGTAGGGGAGGGGGAACATCCACATCTTCAGATTGCCTACCCATTTGCAACAGTGTGCAGAGGCCTCAGAGTCTTGGGAAGATATTTCTTGGTCGGACTTTTCGGGCAATTGTAGTAGTGTTGTCCACCAGCTTGCCCAGTTCATCCCCTCCACTTCCTACAGTTCTTTTTGGAGCTGCTAAGTTGGTTAGCTTTGTAGTTTCCCTTGCTGGAAATTGCCTTCAAAATGAACACCCGAGAATTGCAAATTTGTTAGAAAAGATCGGTGCTCTTCTTGTTGCTGTTGGTGTCTGCGTCATAACAAGTCTTCTTGTTCCTCAGAACTTGGGTTGGATCTGTTGGCTGGCATGTGTCTCCATCGTGCTAGCCTTTATTATATCATCCAATTGA
mRNA sequence
ATGGCATCCTCCCTAGGCAGCATCAATGAACTCTCATCCTTCATCAATGCACTCTCATCCCTCATCAATGCACTCTCATCCCTCATCAATGCAATCAATGGAGAAAATTCTGGAATCTGTAGTTTTACCTGGAGTAGGGGAGGGGGAACATCCACATCTTCAGATTGCCTACCCATTTGCAACAGTGTGCAGAGGCCTCAGAGTCTTGGGAAGATATTTCTTGGTCGGACTTTTCGGGCAATTGTAGTAGTGTTGTCCACCAGCTTGCCCAGTTCATCCCCTCCACTTCCTACAGTTCTTTTTGGAGCTGCTAAGTTGGTTAGCTTTGTAGTTTCCCTTGCTGGAAATTGCCTTCAAAATGAACACCCGAGAATTGCAAATTTGTTAGAAAAGATCGGTGCTCTTCTTGTTGCTGTTGGTGTCTGCGTCATAACAAGTCTTCTTGTTCCTCAGAACTTGGGTTGGATCTGTTGGCTGGCATGTGTCTCCATCGTGCTAGCCTTTATTATATCATCCAATTGA
Coding sequence (CDS)
ATGGCATCCTCCCTAGGCAGCATCAATGAACTCTCATCCTTCATCAATGCACTCTCATCCCTCATCAATGCACTCTCATCCCTCATCAATGCAATCAATGGAGAAAATTCTGGAATCTGTAGTTTTACCTGGAGTAGGGGAGGGGGAACATCCACATCTTCAGATTGCCTACCCATTTGCAACAGTGTGCAGAGGCCTCAGAGTCTTGGGAAGATATTTCTTGGTCGGACTTTTCGGGCAATTGTAGTAGTGTTGTCCACCAGCTTGCCCAGTTCATCCCCTCCACTTCCTACAGTTCTTTTTGGAGCTGCTAAGTTGGTTAGCTTTGTAGTTTCCCTTGCTGGAAATTGCCTTCAAAATGAACACCCGAGAATTGCAAATTTGTTAGAAAAGATCGGTGCTCTTCTTGTTGCTGTTGGTGTCTGCGTCATAACAAGTCTTCTTGTTCCTCAGAACTTGGGTTGGATCTGTTGGCTGGCATGTGTCTCCATCGTGCTAGCCTTTATTATATCATCCAATTGA
Protein sequence
MASSLGSINELSSFINALSSLINALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQSLGKIFLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIISSN
Homology
BLAST of Moc04g29010 vs. NCBI nr
Match:
XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])
HSP 1 Score: 122.1 bits (305), Expect = 4.7e-24
Identity = 73/116 (62.93%), Postives = 81/116 (69.83%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP------QSLGKIFLG 81
+NALSS I AIN N GI SFTW GGGTST SDCLPIC +QRP QSLGK LG
Sbjct: 12 MNALSSFITAINERNLGISSFTW--GGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILG 71
Query: 82 RTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEK 132
TF+A V+ L SLPSS P LPT+LFGAA L+SF VS AG LQ +PR+A L EK
Sbjct: 72 LTFQA-VLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMALLFEK 124
BLAST of Moc04g29010 vs. NCBI nr
Match:
KGN49806.1 (hypothetical protein Csa_004683 [Cucumis sativus])
HSP 1 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 75/155 (48.39%), Postives = 91/155 (58.71%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
+N L+SLI A+ N GI S TW GG +SDCLPI +QRP G FL
Sbjct: 13 MNKLNSLIFAVTNRNPGISSCTW---GG--AASDCLPIYIKMQRPSPVNSPQFGNTFLSL 72
Query: 82 TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
TF+AIV + + PSSS PLP+ LF A L SF+ S G LQ P+ A LL+ GAL
Sbjct: 73 TFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALF 132
Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
A+G C+I SLL+ N WICWLA I+ AFIIS
Sbjct: 133 AAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIIS 162
BLAST of Moc04g29010 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 75/159 (47.17%), Postives = 95/159 (59.75%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP---------QSLGKI 81
+N L S I AIN N I S LPIC ++QRP ++GK
Sbjct: 1 MNELYSFITAINERNPEINS---------------LPICITMQRPSPANSSKTENNVGKT 60
Query: 82 FLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKI 141
LG TF+A++ + TS P+SSPPL T LF AA L+SF VS AG LQN PRIA L EKI
Sbjct: 61 ILGLTFQAVLALFITS-PNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKI 120
Query: 142 GALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
GAL+ A+GVC++ SLL+ QN WI WLA ++AF++S
Sbjct: 121 GALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLS 143
BLAST of Moc04g29010 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 107.5 bits (267), Expect = 1.2e-19
Identity = 73/170 (42.94%), Postives = 97/170 (57.06%), Query Frame = 0
Query: 11 LSSFINALSSLINALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPIC---------N 70
+ S +S +N L SLI +IN N I + LPIC N
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEI---------------NGLPICIIMQTASPAN 60
Query: 71 SVQRPQSLGKIFLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNE 130
S + ++G LG TF+A++ + TS +SSPPL T LFGAA L+SF VS G LQ+
Sbjct: 61 SSKTENNVGTTILGLTFQAVLALFITS-STSSPPLLTHLFGAAVLISFAVSFPGVFLQDG 120
Query: 131 HPRIANLLEKIGALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
PRIA L EKIGAL+ A+GVC++ SLL+ QN WI WLAC ++AF++S
Sbjct: 121 FPRIALLFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLS 154
BLAST of Moc04g29010 vs. NCBI nr
Match:
KAA0050244.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98162.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 69/155 (44.52%), Postives = 88/155 (56.77%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
+N L S I A+ N GI S TW + +SDCLPI +QRP G F+
Sbjct: 13 MNELYSFITAVTNRNPGISSCTWG-----TAASDCLPIYIKMQRPSPVNSPQFGNTFVSS 72
Query: 82 TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
F+AI + L +LP S PPL + L G L +FV S G LQ P+IA+LL+ GALL
Sbjct: 73 NFQAI-LGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGALL 132
Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
A+GVC++ S L+ NL WI WLAC I+ AFI S
Sbjct: 133 AAIGVCIMGSPLLHPNLTWIRWLACGLILPAFITS 160
BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match:
A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 73/116 (62.93%), Postives = 81/116 (69.83%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP------QSLGKIFLG 81
+NALSS I AIN N GI SFTW GGGTST SDCLPIC +QRP QSLGK LG
Sbjct: 12 MNALSSFITAINERNLGISSFTW--GGGTSTPSDCLPICIRMQRPPPAKSSQSLGKTILG 71
Query: 82 RTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEK 132
TF+A V+ L SLPSS P LPT+LFGAA L+SF VS AG LQ +PR+A L EK
Sbjct: 72 LTFQA-VLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMALLFEK 124
BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match:
A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 3.3e-23
Identity = 75/155 (48.39%), Postives = 91/155 (58.71%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
+N L+SLI A+ N GI S TW GG +SDCLPI +QRP G FL
Sbjct: 13 MNKLNSLIFAVTNRNPGISSCTW---GG--AASDCLPIYIKMQRPSPVNSPQFGNTFLSL 72
Query: 82 TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
TF+AIV + + PSSS PLP+ LF A L SF+ S G LQ P+ A LL+ GAL
Sbjct: 73 TFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALF 132
Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
A+G C+I SLL+ N WICWLA I+ AFIIS
Sbjct: 133 AAIGTCIIGSLLLYPNFTWICWLAAGLILPAFIIS 162
BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 5.7e-23
Identity = 75/159 (47.17%), Postives = 95/159 (59.75%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRP---------QSLGKI 81
+N L S I AIN N I S LPIC ++QRP ++GK
Sbjct: 1 MNELYSFITAINERNPEINS---------------LPICITMQRPSPANSSKTENNVGKT 60
Query: 82 FLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKI 141
LG TF+A++ + TS P+SSPPL T LF AA L+SF VS AG LQN PRIA L EKI
Sbjct: 61 ILGLTFQAVLALFITS-PNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKI 120
Query: 142 GALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
GAL+ A+GVC++ SLL+ QN WI WLA ++AF++S
Sbjct: 121 GALIAAIGVCIVASLLIHQNFAWISWLASGFSLMAFVLS 143
BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 5.8e-20
Identity = 73/170 (42.94%), Postives = 97/170 (57.06%), Query Frame = 0
Query: 11 LSSFINALSSLINALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPIC---------N 70
+ S +S +N L SLI +IN N I + LPIC N
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEI---------------NGLPICIIMQTASPAN 60
Query: 71 SVQRPQSLGKIFLGRTFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNE 130
S + ++G LG TF+A++ + TS +SSPPL T LFGAA L+SF VS G LQ+
Sbjct: 61 SSKTENNVGTTILGLTFQAVLALFITS-STSSPPLLTHLFGAAVLISFAVSFPGVFLQDG 120
Query: 131 HPRIANLLEKIGALLVAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
PRIA L EKIGAL+ A+GVC++ SLL+ QN WI WLAC ++AF++S
Sbjct: 121 FPRIALLFEKIGALIAAIGVCILASLLIHQNFAWISWLACGFSLMAFLLS 154
BLAST of Moc04g29010 vs. ExPASy TrEMBL
Match:
A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 6.5e-19
Identity = 69/155 (44.52%), Postives = 88/155 (56.77%), Query Frame = 0
Query: 22 INALSSLINAINGENSGICSFTWSRGGGTSTSSDCLPICNSVQRPQ-----SLGKIFLGR 81
+N L S I A+ N GI S TW + +SDCLPI +QRP G F+
Sbjct: 13 MNELYSFITAVTNRNPGISSCTWG-----TAASDCLPIYIKMQRPSPVNSPQFGNTFVSS 72
Query: 82 TFRAIVVVLSTSLPSSSPPLPTVLFGAAKLVSFVVSLAGNCLQNEHPRIANLLEKIGALL 141
F+AI + L +LP S PPL + L G L +FV S G LQ P+IA+LL+ GALL
Sbjct: 73 NFQAI-LGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGALL 132
Query: 142 VAVGVCVITSLLVPQNLGWICWLACVSIVLAFIIS 172
A+GVC++ S L+ NL WI WLAC I+ AFI S
Sbjct: 133 AAIGVCIMGSPLLHPNLTWIRWLACGLILPAFITS 160
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022146444.1 | 4.7e-24 | 62.93 | uncharacterized protein LOC111015658 [Momordica charantia] | [more] |
KGN49806.1 | 6.8e-23 | 48.39 | hypothetical protein Csa_004683 [Cucumis sativus] | [more] |
KAA0050246.1 | 1.2e-22 | 47.17 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
KGN49803.1 | 1.2e-19 | 42.94 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
KAA0050244.1 | 1.3e-18 | 44.52 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CY58 | 2.3e-24 | 62.93 | uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
A0A0A0KQ03 | 3.3e-23 | 48.39 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1 | [more] |
A0A5A7U7U1 | 5.7e-23 | 47.17 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A0A0KJN8 | 5.8e-20 | 42.94 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
A0A5D3BEH8 | 6.5e-19 | 44.52 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |