Moc04g28740 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g28740
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr4: 21356201 .. 21357116 (+)
RNA-Seq Expression	Moc04g28740
Synteny	Moc04g28740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATCCCGGATCGAAAGATGGTTCGGGAGTGAACCGGGATACATCCCAGACCAATCGAAGCACTGTGGTCCGGGATATGTCTCGGACCAAGACTGGTCCGGGACGGTCCGGGATGACATGTATTTTTTATTTTTTTACCACTTTTTTTTTGGACGATATTCTTATCTCACTTGATTTTATCTATTTGCAGGATGCCTCGTGTTTTCATAACATTTGGTGGAGAATGAAACGATAGTGAAAAAGATTACGTTGGTGGTCGCACAAGAGGATTGACAGTGGATAGTACAACCACGTACAGAGAATTTCTAGGTCACGTGTATAGATTGAGTAATATAAACCCCCTTCAGTTCGATATTATAATTAGACGCGTATATCATTTTAAAACTAAAGTTTGTGTAATGGAGATAACTGATGACGATGACCTGAATTTTTTTTTAACTGGTGAAGATGTTTCTGAATGGCCTATATACATATCTACTACGTCAAAGCAGGTACATGAGAATGAAACGTACATGCCTTCTTTCCCATATCATATAGGCCAAAACGTGTCCTCGAGTTGTATGCCCACAGCTTGTATTCCCCCATTCCAGAGACCCACAGATTCGGTACATTCATTTCCTTCCTCATCATCGATCCCCTCTTCTACCCAACAACCACACCCCTTTTACGGGCATTTAGGTCATGATATAGCAGGTTTGACACCATTGGAATCAGATGTTGTTCCATGTAACATAGGAGATGACAGGGTATGTGATTGGAATGTGCCGGGATTATTGAATGATAATCAAGATGAAAGTGATGAATCATATGACCCGTTGGGAGAGTCAGAAGAAAAATACTATGAAGCAGAATTTGTGAATGATGACTATGACGATGCACTTGATGAAGAGTCTGAGCCCGATGTGGAATAG

mRNA sequence

ATGTTCAATCCCGGATCGAAAGATGGTTCGGGAGTGAACCGGGATACATCCCAGACCAATCGAAGCACTGTGGTCCGGGATATGTCTCGGACCAAGACTGGTCCGGGACGGCCAAAACGTGTCCTCGAGTTGTATGCCCACAGCTTGTATTCCCCCATTCCAGAGACCCACAGATTCGGTCATGATATAGCAGGTTTGACACCATTGGAATCAGATGTTGTTCCATGTAACATAGGAGATGACAGGGTATGTGATTGGAATGTGCCGGGATTATTGAATGATAATCAAGATGAAAGTGATGAATCATATGACCCGTTGGGAGAGTCAGAAGAAAAATACTATGAAGCAGAATTTGTGAATGATGACTATGACGATGCACTTGATGAAGAGTCTGAGCCCGATGTGGAATAG

Coding sequence (CDS)

ATGTTCAATCCCGGATCGAAAGATGGTTCGGGAGTGAACCGGGATACATCCCAGACCAATCGAAGCACTGTGGTCCGGGATATGTCTCGGACCAAGACTGGTCCGGGACGGCCAAAACGTGTCCTCGAGTTGTATGCCCACAGCTTGTATTCCCCCATTCCAGAGACCCACAGATTCGGTCATGATATAGCAGGTTTGACACCATTGGAATCAGATGTTGTTCCATGTAACATAGGAGATGACAGGGTATGTGATTGGAATGTGCCGGGATTATTGAATGATAATCAAGATGAAAGTGATGAATCATATGACCCGTTGGGAGAGTCAGAAGAAAAATACTATGAAGCAGAATTTGTGAATGATGACTATGACGATGCACTTGATGAAGAGTCTGAGCCCGATGTGGAATAG

Protein sequence

MFNPGSKDGSGVNRDTSQTNRSTVVRDMSRTKTGPGRPKRVLELYAHSLYSPIPETHRFGHDIAGLTPLESDVVPCNIGDDRVCDWNVPGLLNDNQDESDESYDPLGESEEKYYEAEFVNDDYDDALDEESEPDVE

Homology

[Close]

BLAST of Moc04g28740 vs. NCBI nr
Match: XP_022154947.1 (uncharacterized protein LOC111022090 [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-33
Identity = 76/89 (85.39%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 48  SLYSPIPETHRFGHDIAGLTPLESDVVPCNIGDDRVCDWNVPGLLNDNQDESDESYDPLG 107
           S   P P     GHDIAGLTPLESDVVPCN+GDDRVCDWNVPGL NDNQDESDESYDPLG
Sbjct: 75  SSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWNDNQDESDESYDPLG 134

Query: 108 ESEEKYYEAEFVNDDYDDALDEESEPDVE 137
           ESEE  YEAEFVNDDYDDALDEESEPDVE
Sbjct: 135 ESEEGDYEAEFVNDDYDDALDEESEPDVE 163

[Close]

BLAST of Moc04g28740 vs. NCBI nr
Match: XP_022155970.1 (uncharacterized protein LOC111022954 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-27
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 60  GHDIAGLTPLESDVVPCNIGDDRVCDWNVPGLLNDNQDESDESYDPLGESEEKYYEAEFV 119
           GHDIAGLTPLESDVVPCN+GDDRVC WN+PGL NDNQDESDESYD LG+SEE  YEAEF+
Sbjct: 112 GHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYDSLGKSEEGDYEAEFM 171

Query: 120 NDDYDDALDEESEPDVE 137
           NDDYDDA DE+ EPDVE
Sbjct: 172 NDDYDDARDEKFEPDVE 188

[Close]

BLAST of Moc04g28740 vs. NCBI nr
Match: XP_022157017.1 (uncharacterized protein LOC111023843 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 4.6e-22
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 60  GHDIAGLTPLESDVVPCNIGDDRVCDWNVPGLLNDNQDESDESYDPLGESEEKYYEAEFV 119
           GHD+ GLTPL SDVVPCN+GDDRVCDW+VPG+ NDN+DES ESYDPL  SEE + +AE+ 
Sbjct: 8   GHDVEGLTPLGSDVVPCNLGDDRVCDWDVPGVWNDNEDESGESYDPLAXSEEGHSQAEYG 67

Query: 120 NDDYDDALDEESEPDVE 137
           N+++DDALD+E E DVE
Sbjct: 68  NEEHDDALDDELEXDVE 84

[Close]

BLAST of Moc04g28740 vs. NCBI nr
Match: XP_022156328.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-17
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 35   PGRPKRVLELYAHSLYSPIPETHRFGHDIAGLT----PLESDVVPCNIGDDRVCDWNVPG 94
            PG  K   +L  H  +      H    +IA         + +VVPCN+GDDRVCDW+VPG
Sbjct: 1097 PGSTKMYQDLKRHYWW------HNMKREIAQFVSKCLTCQQNVVPCNLGDDRVCDWDVPG 1156

Query: 95   LLNDNQDESDESYDPLGESEEKYYEAEFVNDDYDDALDEESEPDVE 137
            + NDN+DES ESYDPL ES+E + +AE+ N+++DDALD+E EPDVE
Sbjct: 1157 VWNDNEDESGESYDPLAESKEGHSQAEYGNEEHDDALDDELEPDVE 1196

[Close]

BLAST of Moc04g28740 vs. ExPASy TrEMBL
Match: A0A6J1DN26 (uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022090 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.3e-34
Identity = 76/89 (85.39%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 48  SLYSPIPETHRFGHDIAGLTPLESDVVPCNIGDDRVCDWNVPGLLNDNQDESDESYDPLG 107
           S   P P     GHDIAGLTPLESDVVPCN+GDDRVCDWNVPGL NDNQDESDESYDPLG
Sbjct: 75  SSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWNDNQDESDESYDPLG 134

Query: 108 ESEEKYYEAEFVNDDYDDALDEESEPDVE 137
           ESEE  YEAEFVNDDYDDALDEESEPDVE
Sbjct: 135 ESEEGDYEAEFVNDDYDDALDEESEPDVE 163

[Close]

BLAST of Moc04g28740 vs. ExPASy TrEMBL
Match: A0A6J1DP00 (uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022954 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.8e-28
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 60  GHDIAGLTPLESDVVPCNIGDDRVCDWNVPGLLNDNQDESDESYDPLGESEEKYYEAEFV 119
           GHDIAGLTPLESDVVPCN+GDDRVC WN+PGL NDNQDESDESYD LG+SEE  YEAEF+
Sbjct: 112 GHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYDSLGKSEEGDYEAEFM 171

Query: 120 NDDYDDALDEESEPDVE 137
           NDDYDDA DE+ EPDVE
Sbjct: 172 NDDYDDARDEKFEPDVE 188

[Close]

BLAST of Moc04g28740 vs. ExPASy TrEMBL
Match: A0A6J1DTG5 (uncharacterized protein LOC111023843 OS=Momordica charantia OX=3673 GN=LOC111023843 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 60  GHDIAGLTPLESDVVPCNIGDDRVCDWNVPGLLNDNQDESDESYDPLGESEEKYYEAEFV 119
           GHD+ GLTPL SDVVPCN+GDDRVCDW+VPG+ NDN+DES ESYDPL  SEE + +AE+ 
Sbjct: 8   GHDVEGLTPLGSDVVPCNLGDDRVCDWDVPGVWNDNEDESGESYDPLAXSEEGHSQAEYG 67

Query: 120 NDDYDDALDEESEPDVE 137
           N+++DDALD+E E DVE
Sbjct: 68  NEEHDDALDDELEXDVE 84

[Close]

BLAST of Moc04g28740 vs. ExPASy TrEMBL
Match: A0A6J1DQB9 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 35   PGRPKRVLELYAHSLYSPIPETHRFGHDIAGLT----PLESDVVPCNIGDDRVCDWNVPG 94
            PG  K   +L  H  +      H    +IA         + +VVPCN+GDDRVCDW+VPG
Sbjct: 1097 PGSTKMYQDLKRHYWW------HNMKREIAQFVSKCLTCQQNVVPCNLGDDRVCDWDVPG 1156

Query: 95   LLNDNQDESDESYDPLGESEEKYYEAEFVNDDYDDALDEESEPDVE 137
            + NDN+DES ESYDPL ES+E + +AE+ N+++DDALD+E EPDVE
Sbjct: 1157 VWNDNEDESGESYDPLAESKEGHSQAEYGNEEHDDALDDELEPDVE 1196

The following BLAST results are available for this feature:

BLAST of Moc04g28740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154947.1	1.5e-33	85.39	uncharacterized protein LOC111022090 [Momordica charantia]	[more]
XP_022155970.1	1.6e-27	84.42	uncharacterized protein LOC111022954 [Momordica charantia]	[more]
XP_022157017.1	4.6e-22	70.13	uncharacterized protein LOC111023843 [Momordica charantia]	[more]
XP_022156328.1	2.6e-17	50.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]	[more]

BLAST of Moc04g28740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g28740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN26	7.3e-34	85.39	uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DP00	7.8e-28	84.42	uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DTG5	2.2e-22	70.13	uncharacterized protein LOC111023843 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DQB9	1.3e-17	50.00	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1	[more]

BLAST of Moc04g28740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g28740.1	Moc04g28740.1	mRNA