Moc04g28330 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g28330
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr4: 20952601 .. 20953464 (+)
RNA-Seq Expression	Moc04g28330
Synteny	Moc04g28330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCGTACCACAACGCTAGAGTCATGCCACGGTCGTTCAAGCTAGGGAACCTTGTCCTCAAAAAGGTTCTGGCCCATGTGAGGGCTCTGGAGCCAAACTGGTCAAGCCCGTTCAAGGTTCGCGGGGTAGTTCAGTCCGGCACACACATCATCACCGACCTGAACGACAACAAACTACCTCACCTATGGAATGCTCAGCATCTATGTGTTTATTACCAATAAATGTAAGACAATCTAAGTGTAACTAGGTTGTATGCAATATTAATAAACACCGATCTGTTCTTATCTAAGTTTACCTCGTCTGCCTGAGCTAAACTTAAATGGGGCCGAGCTATGATATCAGATTTGAAAGTGAGACCAATTCACCGATCGGCTCGGATCATACTCCCCCCATTAACTAGTTGCGTTATTATTATAAAAAAAAGATTTTTTTTATATATACACATTAAGCAATCAAGCAAGTCAGTTTGGCAAATAGTGGAGTTGAGTAGAAACAAAATTTTTTTTCATTCACTTACAAAGTGTGGCTGAGGCATGTAGAGCTCAACCATTACAAAACTGAGCCGAAGCAATATCGCTCCGACTCAACGAGACTTTGCAAAGAAAAAAAGAGAGAAGAGATGATAATAGCTATCAGGTGAGGTGCGTCACGCTCCGACGTTCGGATCGTTCTGTCCATCCATCTGACTCGCAACTCGAACCTCCTCATCGTCCTCGACCTCCAGCTCGGCCTCATAATCCTGATACACTAAAGTGATGTCCAACTCAGGTGCCAGCTTTCTCACGGCATCAGTGGCGAATGCCTTCACCACCTCATTAAACTATGACATAACCTTTATTGTGTTTTCTAAGTCGGCGTAA

mRNA sequence

ATGGCTCCGTACCACAACGCTAGAGTCATGCCACGGTCGTTCAAGCTAGGGAACCTTGTCCTCAAAAAGGTTCTGGCCCATGTGAGGGCTCTGGAGCCAAACTGGTCAAGCCCGTTCAAGGTTCGCGGGGTAGTTCAGTCCGGCACACACATCATCACCGACCTGAACGACAACAAACTACCTCACCTATGGAATGCTCAGCATCTATGTGCCAGCTTTCTCACGGCATCAGTGGCGAATGCCTTCACCACCTCATTAAACTATGACATAACCTTTATTGTGTTTTCTAAGTCGGCGTAA

Coding sequence (CDS)

ATGGCTCCGTACCACAACGCTAGAGTCATGCCACGGTCGTTCAAGCTAGGGAACCTTGTCCTCAAAAAGGTTCTGGCCCATGTGAGGGCTCTGGAGCCAAACTGGTCAAGCCCGTTCAAGGTTCGCGGGGTAGTTCAGTCCGGCACACACATCATCACCGACCTGAACGACAACAAACTACCTCACCTATGGAATGCTCAGCATCTATGTGCCAGCTTTCTCACGGCATCAGTGGCGAATGCCTTCACCACCTCATTAAACTATGACATAACCTTTATTGTGTTTTCTAAGTCGGCGTAA

Protein sequence

MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKLPHLWNAQHLCASFLTASVANAFTTSLNYDITFIVFSKSA

Homology

[Close]

BLAST of Moc04g28330 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-14
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA Y+NARV  R+FK  +LVLKKV+ HV ALEPNW  P++V  +++   ++++DLN  +L
Sbjct: 772 MARYYNARVKVRTFKPSDLVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQL 831

Query: 61  PHLWNAQHL 70
           PH WNA+HL
Sbjct: 832 PHPWNAEHL 840

[Close]

BLAST of Moc04g28330 vs. NCBI nr
Match: XP_022156271.1 (uncharacterized protein LOC111023203 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA Y+NARV  R FK G+LVLKKV+ HV AL+PNW  P++V  +++   ++   LN  +L
Sbjct: 182 MAWYYNARVKVRMFKPGDLVLKKVMQHVEALQPNWEGPYRVLEILRPRAYLSFHLNGRQL 241

Query: 61  PHLWNAQHL 70
           PH WNA+HL
Sbjct: 242 PHPWNAEHL 250

[Close]

BLAST of Moc04g28330 vs. NCBI nr
Match: XP_022156049.1 (uncharacterized protein LOC111023017 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-12
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA Y+N R   R+FK G+L LKKV+ HV ALEPNW  P++V  VV+   ++++DLN  +L
Sbjct: 118 MARYYNTRERVRTFKPGDLNLKKVMQHVEALEPNWEGPYRVLKVVRPRAYLLSDLNGRQL 177

Query: 61  PHLWNAQHL 70
           PH WNA+ L
Sbjct: 178 PHPWNAEPL 186

[Close]

BLAST of Moc04g28330 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-12
Identity = 32/69 (46.38%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA ++N R+ PRSF++G+LV  K+ +HV  L+P+W   F+V+G+V+ GT+++ DL  + L
Sbjct: 556 MARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVL 615

Query: 61  PHLWNAQHL 70
            H WNA+HL
Sbjct: 616 AHPWNAEHL 624

[Close]

BLAST of Moc04g28330 vs. NCBI nr
Match: GFZ01910.1 (hypothetical protein Acr_15g0005190 [Actinidia rufa])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1    MAPYHNARVMPRSFKLGNLVLKKVLAHVR-----ALEPNWSSPFKVRGVVQSGTHIITDL 60
            M  YH+ RV PR+F++G+LVLKKV    R      L PNW  P++VRG  + GT+ +T L
Sbjct: 1128 MRQYHDTRVKPRTFEMGDLVLKKVNQSTRKPSDGKLGPNWEGPYRVRGFSRKGTYWLTGL 1187

Query: 61   NDNKLPHLWNAQHL 70
            ++  LP+ W+A+HL
Sbjct: 1188 DNKDLPNPWHAEHL 1201

[Close]

BLAST of Moc04g28330 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA Y+NARV  R+FK  +LVLKKV+ HV ALEPNW  P++V  +++   ++++DLN  +L
Sbjct: 772 MARYYNARVKVRTFKPSDLVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQL 831

Query: 61  PHLWNAQHL 70
           PH WNA+HL
Sbjct: 832 PHPWNAEHL 840

[Close]

BLAST of Moc04g28330 vs. ExPASy TrEMBL
Match: A0A6J1DUF4 (uncharacterized protein LOC111023203 OS=Momordica charantia OX=3673 GN=LOC111023203 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA Y+NARV  R FK G+LVLKKV+ HV AL+PNW  P++V  +++   ++   LN  +L
Sbjct: 182 MAWYYNARVKVRMFKPGDLVLKKVMQHVEALQPNWEGPYRVLEILRPRAYLSFHLNGRQL 241

Query: 61  PHLWNAQHL 70
           PH WNA+HL
Sbjct: 242 PHPWNAEHL 250

[Close]

BLAST of Moc04g28330 vs. ExPASy TrEMBL
Match: A0A6J1DS38 (uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023017 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA Y+N R   R+FK G+L LKKV+ HV ALEPNW  P++V  VV+   ++++DLN  +L
Sbjct: 118 MARYYNTRERVRTFKPGDLNLKKVMQHVEALEPNWEGPYRVLKVVRPRAYLLSDLNGRQL 177

Query: 61  PHLWNAQHL 70
           PH WNA+ L
Sbjct: 178 PHPWNAEPL 186

[Close]

BLAST of Moc04g28330 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 32/69 (46.38%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   MAPYHNARVMPRSFKLGNLVLKKVLAHVRALEPNWSSPFKVRGVVQSGTHIITDLNDNKL 60
           MA ++N R+ PRSF++G+LV  K+ +HV  L+P+W   F+V+G+V+ GT+++ DL  + L
Sbjct: 556 MARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVL 615

Query: 61  PHLWNAQHL 70
            H WNA+HL
Sbjct: 616 AHPWNAEHL 624

[Close]

BLAST of Moc04g28330 vs. ExPASy TrEMBL
Match: A0A7J0FUQ7 (Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_15g0005190 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 1    MAPYHNARVMPRSFKLGNLVLKKVLAHVR-----ALEPNWSSPFKVRGVVQSGTHIITDL 60
            M  YH+ RV PR+F++G+LVLKKV    R      L PNW  P++VRG  + GT+ +T L
Sbjct: 1128 MRQYHDTRVKPRTFEMGDLVLKKVNQSTRKPSDGKLGPNWEGPYRVRGFSRKGTYWLTGL 1187

Query: 61   NDNKLPHLWNAQHL 70
            ++  LP+ W+A+HL
Sbjct: 1188 DNKDLPNPWHAEHL 1201

The following BLAST results are available for this feature:

BLAST of Moc04g28330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156986.1	4.3e-14	53.62	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022156271.1	1.4e-12	52.17	uncharacterized protein LOC111023203 [Momordica charantia]	[more]
XP_022156049.1	2.4e-12	52.17	uncharacterized protein LOC111023017 [Momordica charantia]	[more]
XP_022159003.1	3.1e-12	46.38	uncharacterized protein LOC111025448 [Momordica charantia]	[more]
GFZ01910.1	2.9e-10	45.95	hypothetical protein Acr_15g0005190 [Actinidia rufa]	[more]

BLAST of Moc04g28330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g28330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWM2	2.1e-14	53.62	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]
A0A6J1DUF4	6.8e-13	52.17	uncharacterized protein LOC111023203 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DS38	1.2e-12	52.17	uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DXL9	1.5e-12	46.38	uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A7J0FUQ7	1.4e-10	45.95	Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_15g0005190 PE=4 SV=1	[more]

BLAST of Moc04g28330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g28330.1	Moc04g28330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding