Moc04g28070 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g28070
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 20741044 .. 20741262 (+)
RNA-Seq Expression	Moc04g28070
Synteny	Moc04g28070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGACCGCCGGCGATGGCGATTCCGATGCCCAGGTCCCGGTTCACATCCAAGTCGTCAAGATCAAGAGAGAGATCGAGAAGATCAAGCACCCGTCGCTGCAGCAATCCGAGATGACCACGCATCTTCTTCTTCGCGGGATCTCCATTTCCAAGTCGCGATCGCGCTCGCCCTTAGGCCTCGCCGCCGAGAGGCCTATCTCCGTCGGGAACTAA

mRNA sequence

ATGGAGAAGACCGCCGGCGATGGCGATTCCGATGCCCAGGTCCCGGTTCACATCCAAGTCGTCAAGATCAAGAGAGAGATCGAGAAGATCAAGCACCCGTCGCTGCAGCAATCCGAGATGACCACGCATCTTCTTCTTCGCGGGATCTCCATTTCCAAGTCGCGATCGCGCTCGCCCTTAGGCCTCGCCGCCGAGAGGCCTATCTCCGTCGGGAACTAA

Coding sequence (CDS)

ATGGAGAAGACCGCCGGCGATGGCGATTCCGATGCCCAGGTCCCGGTTCACATCCAAGTCGTCAAGATCAAGAGAGAGATCGAGAAGATCAAGCACCCGTCGCTGCAGCAATCCGAGATGACCACGCATCTTCTTCTTCGCGGGATCTCCATTTCCAAGTCGCGATCGCGCTCGCCCTTAGGCCTCGCCGCCGAGAGGCCTATCTCCGTCGGGAACTAA

Protein sequence

MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAERPISVGN

Homology

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BLAST of Moc04g28070 vs. NCBI nr
Match: XP_022146403.1 (uncharacterized protein LOC111015628 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPL 60
          MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPL
Sbjct: 1  MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPL 60

Query: 61 GLAAERPISVGN 73
          GLAAERPISVGN
Sbjct: 61 GLAAERPISVGN 72

[Close]

BLAST of Moc04g28070 vs. NCBI nr
Match: XP_038875254.1 (uncharacterized protein LOC120067758 [Benincasa hispida])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 5  AGDGDSD-AQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLA 64
          AGD DSD +Q+P+H QV KIK+EIEKIKHPSLQQSEM THLLLRGISISK RSRSPLGLA
Sbjct: 9  AGDSDSDVSQLPIHSQVQKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA 68

Query: 65 AERPISVGN 73
          AERPISVGN
Sbjct: 69 AERPISVGN 77

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BLAST of Moc04g28070 vs. NCBI nr
Match: XP_023511992.1 (uncharacterized protein LOC111776834 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-20
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7  DGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAER 66
          DG  D+Q PVHIQVVKIKREIEKIKHPSLQQSEM+THLLLR +SISK R RSPLGLAAER
Sbjct: 9  DGGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAER 68

Query: 67 PISVGN 73
           ISVGN
Sbjct: 69 SISVGN 74

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BLAST of Moc04g28070 vs. NCBI nr
Match: XP_023523054.1 (uncharacterized protein LOC111787191 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7  DGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAER 66
          DG  D+Q PVHIQVVKIK+EIEKIKHPSLQQSEM+THLLLR +SISK R RSPLGLAAER
Sbjct: 9  DGGLDSQAPVHIQVVKIKKEIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAER 68

Query: 67 PISVGN 73
           ISVGN
Sbjct: 69 SISVGN 74

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BLAST of Moc04g28070 vs. NCBI nr
Match: XP_022990554.1 (uncharacterized protein LOC111487401 [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 11 DAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAERPISV 70
          D+Q PVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLR +SISK R RSPLGLAAER ISV
Sbjct: 2  DSQAPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRDMSISKPRPRSPLGLAAERSISV 61

Query: 71 GN 73
          GN
Sbjct: 62 GN 63

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BLAST of Moc04g28070 vs. ExPASy TrEMBL
Match: A0A6J1CYH4 (uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015628 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.8e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPL 60
          MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPL
Sbjct: 1  MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPL 60

Query: 61 GLAAERPISVGN 73
          GLAAERPISVGN
Sbjct: 61 GLAAERPISVGN 72

[Close]

BLAST of Moc04g28070 vs. ExPASy TrEMBL
Match: A0A6J1JSC7 (uncharacterized protein LOC111487401 OS=Cucurbita maxima OX=3661 GN=LOC111487401 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.2e-20
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 11 DAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAERPISV 70
          D+Q PVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLR +SISK R RSPLGLAAER ISV
Sbjct: 2  DSQAPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRDMSISKPRPRSPLGLAAERSISV 61

Query: 71 GN 73
          GN
Sbjct: 62 GN 63

[Close]

BLAST of Moc04g28070 vs. ExPASy TrEMBL
Match: A0A6J1E1V2 (uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 7  DGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAER 66
          D   D+Q PVHIQVVKIKREIEKIKHPSLQQSEM+THLLLR +SISK R RSPLGLAAER
Sbjct: 9  DAGLDSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAER 68

Query: 67 PISVGN 73
           ISVGN
Sbjct: 69 SISVGN 74

[Close]

BLAST of Moc04g28070 vs. ExPASy TrEMBL
Match: A0A6J1E741 (uncharacterized protein LOC111430025 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 11 DAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAERPISV 70
          D+Q PVHIQVVKIKREIEKIKHPSLQQSEM+THLLLR +SISK R RSPLGLAAER ISV
Sbjct: 2  DSQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGLAAERSISV 61

Query: 71 GN 73
          GN
Sbjct: 62 GN 63

[Close]

BLAST of Moc04g28070 vs. ExPASy TrEMBL
Match: A0A5A7TYE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00850 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 7  DGDSD-AQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLAAE 66
          D DS+ +QVP+H QV KIK+EIEKIKHPSLQQS+M THLLLRGISISK RSRSPLGL ++
Sbjct: 9  DSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGLPSD 68

Query: 67 RPISVGN 73
           PISVGN
Sbjct: 69 TPISVGN 75

[Close]

BLAST of Moc04g28070 vs. TAIR 10
Match: AT1G24600.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10
Identity = 44/75 (58.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MEKTAGDGDS-DAQVP-VHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRS 60
          MEK A  GD     VP +H QVVKIKRE EKI+HPSL+Q EM   L+ R I +   RSRS
Sbjct: 1  MEKKANHGDDVQESVPIIHSQVVKIKREFEKIQHPSLKQPEMP--LVFREI-MGPRRSRS 60

Query: 61 PLGLA-AERPISVGN 73
          PLGL   ER I VGN
Sbjct: 61 PLGLGERERSIPVGN 72

[Close]

BLAST of Moc04g28070 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MEKTAGDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPL 60
          ME    +G+ D  + +H QV KIK+E EKI+ PSLQQ EM    +L  I   + RSRSPL
Sbjct: 1  MENKTDNGNEDGPI-IHSQVEKIKKEFEKIRQPSLQQPEM--RRVLSEIK-RRQRSRSPL 60

Query: 61 GLAAERPISVGN 73
          GL  ER ISVGN
Sbjct: 61 GL-GERSISVGN 67

The following BLAST results are available for this feature:

BLAST of Moc04g28070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146403.1	1.2e-29	100.00	uncharacterized protein LOC111015628 [Momordica charantia]	[more]
XP_038875254.1	1.6e-21	85.51	uncharacterized protein LOC120067758 [Benincasa hispida]	[more]
XP_023511992.1	5.0e-20	84.85	uncharacterized protein LOC111776834 [Cucurbita pepo subsp. pepo]	[more]
XP_023523054.1	1.1e-19	83.33	uncharacterized protein LOC111787191 [Cucurbita pepo subsp. pepo]	[more]
XP_022990554.1	1.9e-19	88.71	uncharacterized protein LOC111487401 [Cucurbita maxima]	[more]

BLAST of Moc04g28070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g28070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYH4	5.8e-30	100.00	uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1JSC7	9.2e-20	88.71	uncharacterized protein LOC111487401 OS=Cucurbita maxima OX=3661 GN=LOC111487401...	[more]
A0A6J1E1V2	1.2e-19	83.33	uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E741	2.7e-19	87.10	uncharacterized protein LOC111430025 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7TYE7	3.9e-18	77.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Moc04g28070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24600.1	2.9e-10	58.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G67920.1	1.2e-08	52.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..72
None	No IPR available	PANTHER	PTHR34780:SF2	BNAA07G38580D PROTEIN	coord: 6..72
None	No IPR available	PANTHER	PTHR34780	OS08G0427800 PROTEIN	coord: 6..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g28070.1	Moc04g28070.1	mRNA