Moc04g28010 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g28010
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSecretion protein HlyD family protein
Locationchr4: 20687182 .. 20687573 (-)
RNA-Seq ExpressionMoc04g28010
SyntenyMoc04g28010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTGATCTTAATTTCGAATGGACCTCTTCGGATGACGGGTCGTCGTCGAACCCCTCTTCTGGGTCTCGACCTTACCGCCCCTCTTGGGTAGATAATTCCACTCTTACGGCGAGGGACTTACGTTGTTTGAGTTCGACATACCGCATTCCTGATTCGGTTAGCCTTCATCTTCCGAATCCAGGAGAGAGTATTGACGGGTCTTTCCTTGGAGATGTTGTATTTTATGTAGTCATGATCTGCAGAATGCTGCCATGGAGTGTGGCGTCTCTTGGTCTCTTCGTCAAGTTTCCATTGAGCATCCCAACATTGATTATTCCTTTCTCCAGGAGCGCTTTCATGTCGAACGTGATGCCCCCGACGACATGAATGATAATGACGACGAGTAG

mRNA sequence

ATGGCATCTGATCTTAATTTCGAATGGACCTCTTCGGATGACGGGTCGTCGTCGAACCCCTCTTCTGGGTCTCGACCTTACCGCCCCTCTTGGGTAGATAATTCCACTCTTACGGCGAGGGACTTACGTTGTTTGAGTTCGACATACCGCATTCCTGATTCGAATGCTGCCATGGAGTGTGGCGTCTCTTGGTCTCTTCGTCAAGTTTCCATTGAGCATCCCAACATTGATTATTCCTTTCTCCAGGAGCGCTTTCATGTCGAACGTGATGCCCCCGACGACATGAATGATAATGACGACGAGTAG

Coding sequence (CDS)

ATGGCATCTGATCTTAATTTCGAATGGACCTCTTCGGATGACGGGTCGTCGTCGAACCCCTCTTCTGGGTCTCGACCTTACCGCCCCTCTTGGGTAGATAATTCCACTCTTACGGCGAGGGACTTACGTTGTTTGAGTTCGACATACCGCATTCCTGATTCGAATGCTGCCATGGAGTGTGGCGTCTCTTGGTCTCTTCGTCAAGTTTCCATTGAGCATCCCAACATTGATTATTCCTTTCTCCAGGAGCGCTTTCATGTCGAACGTGATGCCCCCGACGACATGAATGATAATGACGACGAGTAG

Protein sequence

MASDLNFEWTSSDDGSSSNPSSGSRPYRPSWVDNSTLTARDLRCLSSTYRIPDSNAAMECGVSWSLRQVSIEHPNIDYSFLQERFHVERDAPDDMNDNDDE
Homology
BLAST of Moc04g28010 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 34   NSTLTARDLRCLSSTYRIPDSNAAMECGVSWSLRQVSIEHPNIDYSFLQERFHVERDAPD 93
            NS   AR+ +   +   +   N+AMECGV W LRQVS +HP+ID SFL ERF  ERDAP+
Sbjct: 1191 NSEFLAREFK--KTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFRAERDAPN 1250

Query: 94   DMNDNDDE 102
            DM+D+DDE
Sbjct: 1251 DMDDDDDE 1256

BLAST of Moc04g28010 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 34   NSTLTARDLRCLSSTYRIPDSNAAMECGVSWSLRQVSIEHPNIDYSFLQERFHVERDAPD 93
            NS   AR+ +   +   +   N+AMECGV W LRQVS +HP+ID SFL ERF  ERDAP+
Sbjct: 1191 NSEFLAREFK--KTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFRAERDAPN 1250

Query: 94   DMNDNDDE 102
            DM+D+DDE
Sbjct: 1251 DMDDDDDE 1256

BLAST of Moc04g28010 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 41  DLRCLSSTYR-----IPDSNAAMECGVSWSLRQVSIEHPNIDYSFLQERFHVERD 91
           D +CL+  +      +   N  MECGV+WS+RQ SIEHP ID+SFL  RF    D
Sbjct: 278 DAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD 332

BLAST of Moc04g28010 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 41  DLRCLSSTYR-----IPDSNAAMECGVSWSLRQVSIEHPNIDYSFLQERFHVERD 91
           D +CL+  +      +   N  MECGV+WS+RQ SIEHP ID+SFL  RF    D
Sbjct: 227 DAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD 281

BLAST of Moc04g28010 vs. ExPASy TrEMBL
Match: A0A0A0LXX2 (Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 41  DLRCLSSTYR-----IPDSNAAMECGVSWSLRQVSIEHPNIDYSFLQERFHVERD 91
           D +CL+  +      +   N  MECGV+WS+RQ SIEHP ID+SFL  RF    D
Sbjct: 59  DAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD 113

BLAST of Moc04g28010 vs. ExPASy TrEMBL
Match: A0A1S3C5B2 (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.9e-04
Identity = 26/55 (47.27%), Postives = 33/55 (60.00%), Query Frame = 0

Query: 41  DLRCLSSTYR-----IPDSNAAMECGVSWSLRQVSIEHPNIDYSFLQERFHVERD 91
           D +CL+  +      +   N  MECGV+WS+RQ SIEHP ID+SFL  RF    D
Sbjct: 288 DAKCLAEKFSKTEEFVVMQNKIMECGVNWSVRQASIEHPGIDFSFLPIRFKAACD 342

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156747.18.6e-1055.88uncharacterized protein LOC111023586 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSS14.2e-1055.88uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7SSF95.9e-0447.27Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BQ225.9e-0447.27Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A0A0LXX25.9e-0447.27Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250... [more]
A0A1S3C5B25.9e-0447.27uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g28010.1Moc04g28010.1mRNA