Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAAAGACTCCAAAAATGGAGATCTTTGCTTCTTTCCAAGGGTGGTAGGCTTACTCTTGCTCAGTCGGTCCTCAATAGCATCCCCATATACTTCTTTTCAATTCTCAAAGCTCCAGAGACCATCATAAAGTCTATGGAGAAGCTTATGCGGGACTTCATATGGAATGGTGGGATTTCTAGATCGGTGGGGAATTTGGTGAAGTGGTCTTGGTCGGCTTTGCCTCATACACAGGGGGGCCTTGGAATTGGTTCTTTGAGGCTAAATAACAATGCTCTATTAATGAAATGGTTATGGCAGTTCACAGTGGAAAGAGATAGCCTTTGGAGACGGGTGATAGCCACTATTTACGTTGTGGAGTCTTTTGGATGGTGCACAAAACCATCGGATGGTTCTTCTATTGGAAGACCGTGGAGGGACATACAAGAGAACCTTAGAGATTTTCAAAAGTTCTCCTTCTTCAAAGTATCCTCAGGTGTCCAAGTCAGATTTTGGGAGGACCCATGAATTGATTTTGCCCCTCTTTACACCACTTTCCCGGATTTGTTTGCGTTATCCTCCAAGAAAGGTATGTCCATTGCGGATTGTTGGTGTGCAGAGGCCTCAACTTGGAATCTTCGTTTCAGAAGAAATCTCTTTGAAAGGGAAATGAGTAGATGGGCAAACTTCACTGAAAAAATAGAAGGTGCAGCTATCGGAAATGGAAGGGACATTTTATGGTGGAAAGCAGACCCATCCGGACGTTTCACAGTCAATTCAGCCTTCATGGCTCTCACGTCCCCGTCTCCTAAACTTAATTCAGCTACAGCAAACTTGATATGGAATTTTAAAGTCCCAAAGAAGGTAAAATTCTTCATTTGGACTTTGTTCTATAGAGGGGTAAATACTGCAGAGAAACTTCAGAGGAAATTACCTCACTGGACTCTTTCTCCCTCTATGTACACATAGTGTATGAGCAACAATGAAACAGTGGACCACCTTTTTCTCCATTGCCCTTTTGTTTCCAAAGCTTGGGGGTTTATAGCTTCTTTGCTAGATTTATCTCTCTGCATACCTAGAAGAATTGAGGATTTCATAGCCGAAGGTTATGGAGGAAGGCAGCTCAAGGCCAAGGCTTGGGTTCTTTGGAATTGTGCGGCCCGGGCTCTTTCATGGTCGATATGGAAGGAACGAAATAGTCAACTTTTTGAAGATAAGTTGATTTTGTTCGATTCTTTTTGTGTAAATACTAAGCATCTAGCTTCTTGGTGGGCTTTGCTATACAAGAAAGTTTTTTGTAACTACAATCTTCCTTTGCTTAGACAAGATTGGAAAGTGGTGATTGTATAG
mRNA sequence
ATGCACAAAAGACTCCAAAAATGGAGATCTTTGCTTCTTTCCAAGGGTGGTAGGCTTACTCTTGCTCAGTCGGTCCTCAATAGCATCCCCATATACTTCTTTTCAATTCTCAAAGCTCCAGAGACCATCATAAAGTCTATGGAGAAGCTTATGCGGGACTTCATATGGAATGGTGGGATTTCTAGATCGGTGGGGAATTTGGTGAAGTGGTCTTGGTCGGCTTTGCCTCATACACAGGGGGGCCTTGGAATTGGTTCTTTGAGGCTAAATAACAATGCTCTATTAATGAAATGGTTATGGCAGTTCACAGTGGAAAGAGATAGCCTTTGGAGACGGGTGATAGCCACTATTTACGTTGTGGAGTCTTTTGGATGGTGCACAAAACCATCGGATGGTTCTTCTATTGGAAGACCGTGGAGGGACATACAAGAGAACCTTAGAGATTTTCAAAAGTTCTCCTTCTTCAAAGTATCCTCAGGTATGTCCATTGCGGATTGTTGGTGTGCAGAGGCCTCAACTTGGAATCTTCGTTTCAGAAGAAATCTCTTTGAAAGGGAAATGAGTAGATGGGCAAACTTCACTGAAAAAATAGAAGGTGCAGCTATCGGAAATGGAAGGGACATTTTATGGTGGAAAGCAGACCCATCCGGACGTTTCACAGTCAATTCAGCCTTCATGGCTCTCACGTCCCCGTCTCCTAAACTTAATTCAGCTACAGCAAACTTGATATGGAATTTTAAAGTCCCAAAGAAGTGTATGAGCAACAATGAAACAGTGGACCACCTTTTTCTCCATTGCCCTTTTGTTTCCAAAGCTTGGGGGTTTATAGCTTCTTTGCTAGATTTATCTCTCTGCATACCTAGAAGAATTGAGGATTTCATAGCCGAAGGTTATGGAGGAAGGCAGCTCAAGGCCAAGGCTTGGGTTCTTTGGAATTGTGCGGCCCGGGCTCTTTCATGGTCGATATGGAAGGAACGAAATAGTCAACTTTTTGAAGATAAGTTGATTTTGTTCGATTCTTTTTGTGTAAATACTAAGCATCTAGCTTCTTGGTGGGCTTTGCTATACAAGAAAGTTTTTTGTAACTACAATCTTCCTTTGCTTAGACAAGATTGGAAAGTGGTGATTGTATAG
Coding sequence (CDS)
ATGCACAAAAGACTCCAAAAATGGAGATCTTTGCTTCTTTCCAAGGGTGGTAGGCTTACTCTTGCTCAGTCGGTCCTCAATAGCATCCCCATATACTTCTTTTCAATTCTCAAAGCTCCAGAGACCATCATAAAGTCTATGGAGAAGCTTATGCGGGACTTCATATGGAATGGTGGGATTTCTAGATCGGTGGGGAATTTGGTGAAGTGGTCTTGGTCGGCTTTGCCTCATACACAGGGGGGCCTTGGAATTGGTTCTTTGAGGCTAAATAACAATGCTCTATTAATGAAATGGTTATGGCAGTTCACAGTGGAAAGAGATAGCCTTTGGAGACGGGTGATAGCCACTATTTACGTTGTGGAGTCTTTTGGATGGTGCACAAAACCATCGGATGGTTCTTCTATTGGAAGACCGTGGAGGGACATACAAGAGAACCTTAGAGATTTTCAAAAGTTCTCCTTCTTCAAAGTATCCTCAGGTATGTCCATTGCGGATTGTTGGTGTGCAGAGGCCTCAACTTGGAATCTTCGTTTCAGAAGAAATCTCTTTGAAAGGGAAATGAGTAGATGGGCAAACTTCACTGAAAAAATAGAAGGTGCAGCTATCGGAAATGGAAGGGACATTTTATGGTGGAAAGCAGACCCATCCGGACGTTTCACAGTCAATTCAGCCTTCATGGCTCTCACGTCCCCGTCTCCTAAACTTAATTCAGCTACAGCAAACTTGATATGGAATTTTAAAGTCCCAAAGAAGTGTATGAGCAACAATGAAACAGTGGACCACCTTTTTCTCCATTGCCCTTTTGTTTCCAAAGCTTGGGGGTTTATAGCTTCTTTGCTAGATTTATCTCTCTGCATACCTAGAAGAATTGAGGATTTCATAGCCGAAGGTTATGGAGGAAGGCAGCTCAAGGCCAAGGCTTGGGTTCTTTGGAATTGTGCGGCCCGGGCTCTTTCATGGTCGATATGGAAGGAACGAAATAGTCAACTTTTTGAAGATAAGTTGATTTTGTTCGATTCTTTTTGTGTAAATACTAAGCATCTAGCTTCTTGGTGGGCTTTGCTATACAAGAAAGTTTTTTGTAACTACAATCTTCCTTTGCTTAGACAAGATTGGAAAGTGGTGATTGTATAG
Protein sequence
MHKRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISRSVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVESFGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIADCWCAEASTWNLRFRRNLFEREMSRWANFTEKIEGAAIGNGRDILWWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVPKKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFIAEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKLILFDSFCVNTKHLASWWALLYKKVFCNYNLPLLRQDWKVVIV
Homology
BLAST of Moc04g27770 vs. NCBI nr
Match:
KAB2623078.1 (ribonuclease H protein [Pyrus ussuriensis x Pyrus communis])
HSP 1 Score: 231.1 bits (588), Expect = 1.6e-56
Identity = 141/447 (31.54%), Postives = 204/447 (45.64%), Query Frame = 0
Query: 1 MHKRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGI 60
M KRLQ W+ LS+GGRLTL QSVL S+PIY+ S+ K P +I +EKLM+ F+W G
Sbjct: 1 MEKRLQNWKKAFLSRGGRLTLIQSVLGSLPIYYMSLFKIPCGVIGRLEKLMKGFLWEGVE 60
Query: 61 SRSVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVV 120
+LVKW +GGLG+G+LR N ALL KWLW+F E +SLW +VI T Y +
Sbjct: 61 EGKKNHLVKWEIVIKSKEEGGLGVGNLRNQNEALLAKWLWRFPKEPNSLWHKVIRTKYGL 120
Query: 121 ESFGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIADCW------------- 180
+ GW P S PW+DI L+ F + FKV +G + CW
Sbjct: 121 QDNGWNANPPVRGSSRSPWKDISCGLQSFLQCCKFKVGNGERV-KCWEDGWLEGGPLKEQ 180
Query: 181 ---------------------CAEASTWNLRFRRNLFEREMSRWANFTEKIEGAAIGNGR 240
+WN FRRNL E E+ A +K+E + R
Sbjct: 181 FPRLFLLSRRHNQNIASFVDLSINFLSWNFDFRRNLNEVEIEEAARLLQKVENVRLSQSR 240
Query: 241 -DILWWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVPKK-------------- 300
D WK D SG FT S L++ + ++ IW KVP K
Sbjct: 241 ADDRRWKLDLSGLFTCKSYRSFLSNNGIVQHFPPSSQIWKSKVPPKVKVLVWLVAIGRLN 300
Query: 301 ---------------------CMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRI 360
C + E+V+H+FLHC + + W + + +S IP+
Sbjct: 301 TCDQIQRRSPFICISPHWCSLCKAKEESVNHIFLHCSYTIQLWWKLFQEVRVSWVIPKGC 360
Query: 361 EDFIAEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL-ILFDSFCVNTKHLA 377
+ ++ + + KA LW C A+ W+IW ERN ++F+D + ++ A
Sbjct: 361 FELLSTNFEALGIGRKAKALWGCLVSAVFWNIWLERNKRIFDDYTGVGVADLWGRVRYWA 420
BLAST of Moc04g27770 vs. NCBI nr
Match:
RVW80860.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 226.9 bits (577), Expect = 3.0e-55
Identity = 142/442 (32.13%), Postives = 194/442 (43.89%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
+RL W+ LS GGR+TL QS L +P YF S+ K P ++ +E++ RDF+W+G
Sbjct: 179 RRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQRDFLWSGVGEG 238
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P ++GGLG G + + N ALL KWLW++ E +LW +VI +IY S
Sbjct: 239 KRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 298
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIA---DCWCAEAS------- 182
GW S PW+ I ++F KF+ F V +G I D W E
Sbjct: 299 NGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVGNGDRIRFWDDLWWGEQPLGVQYPR 358
Query: 183 ----------------------TWNLRFRRNLFEREMSRWANFTEKIEGAAIGNG-RDIL 242
+WN FRRNL + E+ + + I + D
Sbjct: 359 LLRVVTDKNAPISSILGYTRPFSWNFTFRRNLSDSEIEDLEGLMQSFDRLHISSSVPDKR 418
Query: 243 WWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVP-------------------- 302
W PSG FTV S F+AL+ S +WN +VP
Sbjct: 419 SWSLSPSGLFTVKSFFLALSQYSESPPIFPTKFVWNAQVPFKVKSFVWLVAHKKVNTNDL 478
Query: 303 ---------------KKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFI 362
K CM + ETVDHLFLHC W + + PR I D +
Sbjct: 479 LQLRRPYKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDML 538
Query: 363 AEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL----ILFDSFCVNTKHLAS 373
A + G + VLW A AL W +W+ERN+++FEDK L+DS C L S
Sbjct: 539 ASNFNGFGFSKRGIVLWQNACIALMWVVWRERNARIFEDKARNSEYLWDSIC----FLTS 598
BLAST of Moc04g27770 vs. NCBI nr
Match:
RVW52490.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 226.1 bits (575), Expect = 5.1e-55
Identity = 143/445 (32.13%), Postives = 195/445 (43.82%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
+RL W+ LS GGR+TL QS L +P YF S+ K P ++ +E++ R+F+W+G
Sbjct: 21 RRLDGWQKAYLSFGGRITLIQSCLKHMPCYFLSLFKIPASVAAKIERMQREFLWSGVGEG 80
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P ++GGLG G + + N ALL KWLW++ E +LW +VI +IY S
Sbjct: 81 KRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 140
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIA---DCWCAEAS------- 182
GW + S PW+ I ++F KF+ F V G I D W +
Sbjct: 141 NGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQYPR 200
Query: 183 ----------------------TWNLRFRRNLFEREMSRWANFTEKIEGAAIG-NGRDIL 242
+WN FRRNL + E+ + ++ I + D
Sbjct: 201 LLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVPDKR 260
Query: 243 WWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVP-------------------- 302
W PSG FTV S F+AL+ S +WN +VP
Sbjct: 261 SWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNTNDL 320
Query: 303 ---------------KKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFI 362
K CM + ETVDHLFLHC W + L + PR I D
Sbjct: 321 LQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMF 380
Query: 363 AEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL----ILFDSFCVNTKHLAS 376
+ G K VLW A AL W +W+ERN+++FEDK L+DS C LAS
Sbjct: 381 FTNFNGFGSSKKGVVLWQDACIALMWVVWRERNARIFEDKARNSGFLWDSIC----FLAS 440
BLAST of Moc04g27770 vs. NCBI nr
Match:
CAN65484.1 (hypothetical protein VITISV_029474 [Vitis vinifera])
HSP 1 Score: 225.3 bits (573), Expect = 8.7e-55
Identity = 140/442 (31.67%), Postives = 195/442 (44.12%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
+RL W+ LS GGR+TL QS L +P YF S+ K P ++ +E++ RDF+W+G
Sbjct: 1441 RRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQRDFLWSGVGEG 1500
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P ++GGLG G + + N ALL KWLW++ E +LW +VI +IY S
Sbjct: 1501 KRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 1560
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIA---DCWCAEAS------- 182
GW S PW+ I ++F KF+ F V +G I D W E
Sbjct: 1561 NGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVGNGDRIRFWDDLWWGEQPLGVQYPR 1620
Query: 183 ----------------------TWNLRFRRNLFEREMSRWANFTEKIEGAAIGNG-RDIL 242
+WN FRRNL + E+ + ++ I + D
Sbjct: 1621 LLRVVTDKNAPISSILGYTRPFSWNFTFRRNLSDSEIEDLEGLMQSLDRLHISSSVPDKR 1680
Query: 243 WWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVP-------------------- 302
W PSG FTV S F+AL+ S +WN +VP
Sbjct: 1681 SWFLSPSGLFTVKSFFLALSQYSESPTIFPTKFVWNAQVPFKVKSFVWLVAHKKVNTNDL 1740
Query: 303 ---------------KKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFI 362
K CM + ETVDHLFLHC W + + PR I D +
Sbjct: 1741 LQLRRPYKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDML 1800
Query: 363 AEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL----ILFDSFCVNTKHLAS 373
+ + G + VLW A A+ W +W+ERN+++FEDK L+DS C L S
Sbjct: 1801 SSNFNGFGFSKRGIVLWQNACIAIMWVVWRERNARIFEDKARNSEYLWDSIC----FLTS 1860
BLAST of Moc04g27770 vs. NCBI nr
Match:
CAN72359.1 (hypothetical protein VITISV_000131 [Vitis vinifera])
HSP 1 Score: 224.9 bits (572), Expect = 1.1e-54
Identity = 141/442 (31.90%), Postives = 193/442 (43.67%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
+RL W+ LS GGR+TL QS L +P YF S+ K P ++ +E++ RDF+W+G
Sbjct: 331 RRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQRDFLWSGVGEG 390
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P ++GGLG G + + N ALL KWLW++ E +LW +VI +IY S
Sbjct: 391 KRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 450
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIA---DCWCAEAS------- 182
GW S PW+ I ++F KF+ F V +G I D W E
Sbjct: 451 NGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVGNGDRIRFWDDLWWGEQPLGVQYPR 510
Query: 183 ----------------------TWNLRFRRNLFEREMSRWANFTEKIEGAAIGNG-RDIL 242
+WN FRRNL + E+ + + I + D
Sbjct: 511 LLRVVTDKNAPISSILGSTRPFSWNFTFRRNLSDSEIEDLEGLMQSFDRLHISSSVPDKR 570
Query: 243 WWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVP-------------------- 302
W PSG FTV F+AL+ S +WN +VP
Sbjct: 571 SWSLSPSGLFTVKXFFLALSQYSESPPIFPTKFVWNAQVPFKVKSFVWLVAHKKVNTNDL 630
Query: 303 ---------------KKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFI 362
K CM + ETVDHLFLHC W + + PR I D +
Sbjct: 631 LQLRRPYKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDML 690
Query: 363 AEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL----ILFDSFCVNTKHLAS 373
A + G + VLW A AL W +W+ERN+++FEDK L+DS C L S
Sbjct: 691 ASNFNGFGFSKRGIVLWQNACIALMWVVWRERNARIFEDKARNSEYLWDSIC----FLTS 750
BLAST of Moc04g27770 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 2.0e-22
Identity = 80/281 (28.47%), Postives = 128/281 (45.55%), Query Frame = 0
Query: 4 RLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISRS 63
R+ WR LS GRLTL ++VL+S+P++ S + P++I+ +++L R F+W +
Sbjct: 23 RMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKK 82
Query: 64 VGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIY---VV 123
+LVKWS P +GGLG+ + + N AL+ K W+ E++SLW V+ Y +
Sbjct: 83 KQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEI 142
Query: 124 ESFGWCTKPSDGSSIGRPWRDIQENLRDF------------QKFSFF-----------KV 183
W SS WR I LRD Q+ F+ ++
Sbjct: 143 RDSRWLIPKGSWSS---TWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKPLLEL 202
Query: 184 SSGMSIADCWCAEASTWNLRFRRNLFEREMSRWANFTEKIEGAA-----IGNGRDILWWK 243
+G DC A + R F + + + ++E A + RD L WK
Sbjct: 203 DNGERPTDCDTVVAKDLWIPGRGWDFAK-IDPYTTNNTRLELRAVVLDLVTGARDRLSWK 262
Query: 244 ADPSGRFTVNSAFMALT-SPSPKLNSAT-ANLIWNFKVPKK 252
G+F+V SA+ LT P+ N A+ N +W +VP++
Sbjct: 263 FSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPER 299
BLAST of Moc04g27770 vs. ExPASy Swiss-Prot
Match:
P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)
HSP 1 Score: 46.2 bits (108), Expect = 9.4e-04
Identity = 29/112 (25.89%), Postives = 57/112 (50.89%), Query Frame = 0
Query: 5 LQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSI--LKAPETIIKSMEKLMRDFIWNGGISR 64
+ KW+++ S GR+ + + + IY F+ +KAP + K +EK++ FIWN +
Sbjct: 795 VNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKKPQ 854
Query: 65 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERD-SLWRRV 114
L+ + + GG+ + LRL ++++K W + R+ +W R+
Sbjct: 855 IAKTLL-----SNKNKAGGITLPDLRLYYKSIVIKTAWYWHKNREVDVWNRI 901
BLAST of Moc04g27770 vs. ExPASy TrEMBL
Match:
A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 233.0 bits (593), Expect = 2.0e-57
Identity = 138/404 (34.16%), Postives = 190/404 (47.03%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
KRL W+ LSKGGRLTL QSVL+S+P+YF S+ KAP ++ K++EK+MRDF+W G S
Sbjct: 1478 KRLDGWKCAFLSKGGRLTLIQSVLSSLPLYFLSLFKAPRSVTKALEKMMRDFLWEGSESS 1537
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P +GGLGIG L L N +LLMKWLW+F +E++SLW RV+ + Y
Sbjct: 1538 GGEHLVAWDEVCRPRHEGGLGIGRLELRNKSLLMKWLWRFPLEQNSLWHRVVVSRYGRAD 1597
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSI---ADCWCAE--------- 182
W +K S PWRDI + +F FK+ G I D W +
Sbjct: 1598 NLWDSKKGSRLSPKGPWRDISDLYDEFLGLVHFKLGRGDRIRFWEDVWIDDYPLVSAFPD 1657
Query: 183 -------------------------ASTWNLRFRRNLFEREMSRWANFTEKIEGA-AIGN 242
+WN +FRRNL +RE+ + +K+E +
Sbjct: 1658 LAVISEGRNTPIKELIVDEGLPGGWVESWNFKFRRNLMDRELPSLISLMQKVEHVRVLSI 1717
Query: 243 GRDILWWKADPSGRFTVNSAFMALTS-PSPKLNSATANLIWNFKVPKK------------ 302
D WK DPSG F+ SAF + S PS ++ T +L W P K
Sbjct: 1718 SEDSRIWKPDPSGVFSCKSAFSWMVSNPSFRVLDWTKSL-WKSCAPSKVKVFGWLLALEK 1777
Query: 303 -----------------------CMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPR 333
C + E+V HLFL C F+ + W ++ LS +PR
Sbjct: 1778 VNVHDKVQKRKPFLYISPGWCVCCKGSGESVGHLFLECKFIGRIWRYVLGEFGLSWVMPR 1837
BLAST of Moc04g27770 vs. ExPASy TrEMBL
Match:
A0A5N5H648 (Ribonuclease H protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_025260 PE=4 SV=1)
HSP 1 Score: 231.1 bits (588), Expect = 7.6e-57
Identity = 141/447 (31.54%), Postives = 204/447 (45.64%), Query Frame = 0
Query: 1 MHKRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGI 60
M KRLQ W+ LS+GGRLTL QSVL S+PIY+ S+ K P +I +EKLM+ F+W G
Sbjct: 1 MEKRLQNWKKAFLSRGGRLTLIQSVLGSLPIYYMSLFKIPCGVIGRLEKLMKGFLWEGVE 60
Query: 61 SRSVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVV 120
+LVKW +GGLG+G+LR N ALL KWLW+F E +SLW +VI T Y +
Sbjct: 61 EGKKNHLVKWEIVIKSKEEGGLGVGNLRNQNEALLAKWLWRFPKEPNSLWHKVIRTKYGL 120
Query: 121 ESFGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIADCW------------- 180
+ GW P S PW+DI L+ F + FKV +G + CW
Sbjct: 121 QDNGWNANPPVRGSSRSPWKDISCGLQSFLQCCKFKVGNGERV-KCWEDGWLEGGPLKEQ 180
Query: 181 ---------------------CAEASTWNLRFRRNLFEREMSRWANFTEKIEGAAIGNGR 240
+WN FRRNL E E+ A +K+E + R
Sbjct: 181 FPRLFLLSRRHNQNIASFVDLSINFLSWNFDFRRNLNEVEIEEAARLLQKVENVRLSQSR 240
Query: 241 -DILWWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVPKK-------------- 300
D WK D SG FT S L++ + ++ IW KVP K
Sbjct: 241 ADDRRWKLDLSGLFTCKSYRSFLSNNGIVQHFPPSSQIWKSKVPPKVKVLVWLVAIGRLN 300
Query: 301 ---------------------CMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRI 360
C + E+V+H+FLHC + + W + + +S IP+
Sbjct: 301 TCDQIQRRSPFICISPHWCSLCKAKEESVNHIFLHCSYTIQLWWKLFQEVRVSWVIPKGC 360
Query: 361 EDFIAEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL-ILFDSFCVNTKHLA 377
+ ++ + + KA LW C A+ W+IW ERN ++F+D + ++ A
Sbjct: 361 FELLSTNFEALGIGRKAKALWGCLVSAVFWNIWLERNKRIFDDYTGVGVADLWGRVRYWA 420
BLAST of Moc04g27770 vs. ExPASy TrEMBL
Match:
A0A438H8I3 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_629 PE=4 SV=1)
HSP 1 Score: 226.9 bits (577), Expect = 1.4e-55
Identity = 142/442 (32.13%), Postives = 194/442 (43.89%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
+RL W+ LS GGR+TL QS L +P YF S+ K P ++ +E++ RDF+W+G
Sbjct: 179 RRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQRDFLWSGVGEG 238
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P ++GGLG G + + N ALL KWLW++ E +LW +VI +IY S
Sbjct: 239 KRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 298
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIA---DCWCAEAS------- 182
GW S PW+ I ++F KF+ F V +G I D W E
Sbjct: 299 NGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVGNGDRIRFWDDLWWGEQPLGVQYPR 358
Query: 183 ----------------------TWNLRFRRNLFEREMSRWANFTEKIEGAAIGNG-RDIL 242
+WN FRRNL + E+ + + I + D
Sbjct: 359 LLRVVTDKNAPISSILGYTRPFSWNFTFRRNLSDSEIEDLEGLMQSFDRLHISSSVPDKR 418
Query: 243 WWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVP-------------------- 302
W PSG FTV S F+AL+ S +WN +VP
Sbjct: 419 SWSLSPSGLFTVKSFFLALSQYSESPPIFPTKFVWNAQVPFKVKSFVWLVAHKKVNTNDL 478
Query: 303 ---------------KKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFI 362
K CM + ETVDHLFLHC W + + PR I D +
Sbjct: 479 LQLRRPYKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDML 538
Query: 363 AEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL----ILFDSFCVNTKHLAS 373
A + G + VLW A AL W +W+ERN+++FEDK L+DS C L S
Sbjct: 539 ASNFNGFGFSKRGIVLWQNACIALMWVVWRERNARIFEDKARNSEYLWDSIC----FLTS 598
BLAST of Moc04g27770 vs. ExPASy TrEMBL
Match:
A0A438EXL3 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_220 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 2.5e-55
Identity = 143/445 (32.13%), Postives = 195/445 (43.82%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
+RL W+ LS GGR+TL QS L +P YF S+ K P ++ +E++ R+F+W+G
Sbjct: 21 RRLDGWQKAYLSFGGRITLIQSCLKHMPCYFLSLFKIPASVAAKIERMQREFLWSGVGEG 80
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P ++GGLG G + + N ALL KWLW++ E +LW +VI +IY S
Sbjct: 81 KRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 140
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIA---DCWCAEAS------- 182
GW + S PW+ I ++F KF+ F V G I D W +
Sbjct: 141 NGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQYPR 200
Query: 183 ----------------------TWNLRFRRNLFEREMSRWANFTEKIEGAAIG-NGRDIL 242
+WN FRRNL + E+ + ++ I + D
Sbjct: 201 LLSVVTDKNAPISSILGYSRPFSWNFNFRRNLTDSEIEDLESLMRSLDRLHISPSVPDKR 260
Query: 243 WWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVP-------------------- 302
W PSG FTV S F+AL+ S +WN +VP
Sbjct: 261 SWSISPSGLFTVKSFFLALSQYSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNTNDL 320
Query: 303 ---------------KKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFI 362
K CM + ETVDHLFLHC W + L + PR I D
Sbjct: 321 LQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMF 380
Query: 363 AEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL----ILFDSFCVNTKHLAS 376
+ G K VLW A AL W +W+ERN+++FEDK L+DS C LAS
Sbjct: 381 FTNFNGFGSSKKGVVLWQDACIALMWVVWRERNARIFEDKARNSGFLWDSIC----FLAS 440
BLAST of Moc04g27770 vs. ExPASy TrEMBL
Match:
A5BCI7 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_029474 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 4.2e-55
Identity = 140/442 (31.67%), Postives = 195/442 (44.12%), Query Frame = 0
Query: 3 KRLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISR 62
+RL W+ LS GGR+TL QS L +P YF S+ K P ++ +E++ RDF+W+G
Sbjct: 1441 RRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQRDFLWSGVGEG 1500
Query: 63 SVGNLVKWSWSALPHTQGGLGIGSLRLNNNALLMKWLWQFTVERDSLWRRVIATIYVVES 122
+LV W P ++GGLG G + + N ALL KWLW++ E +LW +VI +IY S
Sbjct: 1501 KRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 1560
Query: 123 FGWCTKPSDGSSIGRPWRDIQENLRDFQKFSFFKVSSGMSIA---DCWCAEAS------- 182
GW S PW+ I ++F KF+ F V +G I D W E
Sbjct: 1561 NGWDVNNIVRWSHRCPWKAIALVYQEFSKFTRFVVGNGDRIRFWDDLWWGEQPLGVQYPR 1620
Query: 183 ----------------------TWNLRFRRNLFEREMSRWANFTEKIEGAAIGNG-RDIL 242
+WN FRRNL + E+ + ++ I + D
Sbjct: 1621 LLRVVTDKNAPISSILGYTRPFSWNFTFRRNLSDSEIEDLEGLMQSLDRLHISSSVPDKR 1680
Query: 243 WWKADPSGRFTVNSAFMALTSPSPKLNSATANLIWNFKVP-------------------- 302
W PSG FTV S F+AL+ S +WN +VP
Sbjct: 1681 SWFLSPSGLFTVKSFFLALSQYSESPTIFPTKFVWNAQVPFKVKSFVWLVAHKKVNTNDL 1740
Query: 303 ---------------KKCMSNNETVDHLFLHCPFVSKAWGFIASLLDLSLCIPRRIEDFI 362
K CM + ETVDHLFLHC W + + PR I D +
Sbjct: 1741 LQLRRPYKALSPDICKLCMKHGETVDHLFLHCSLTIGLWHRLFQSAKMDWVSPRSISDML 1800
Query: 363 AEGYGGRQLKAKAWVLWNCAARALSWSIWKERNSQLFEDKL----ILFDSFCVNTKHLAS 373
+ + G + VLW A A+ W +W+ERN+++FEDK L+DS C L S
Sbjct: 1801 SSNFNGFGFSKRGIVLWQNACIAIMWVVWRERNARIFEDKARNSEYLWDSIC----FLTS 1860
BLAST of Moc04g27770 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 0
Query: 4 RLQKWRSLLLSKGGRLTLAQSVLNSIPIYFFSILKAPETIIKSMEKLMRDFIWNGGISRS 63
R+ KW + LS GRL L SV++S+ ++ S + P IK ++ + F+W+G +
Sbjct: 52 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNT 111
Query: 64 VGNLVKWSWSALPHTQGGLGIGSLR---------LNNNALLMKWLWQFTVERDSL 110
V WS P +GGLGI SL+ ++ N L W+W+ ++ +L
Sbjct: 112 KKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRAL 166
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAB2623078.1 | 1.6e-56 | 31.54 | ribonuclease H protein [Pyrus ussuriensis x Pyrus communis] | [more] |
RVW80860.1 | 3.0e-55 | 32.13 | putative ribonuclease H protein [Vitis vinifera] | [more] |
RVW52490.1 | 5.1e-55 | 32.13 | putative ribonuclease H protein [Vitis vinifera] | [more] |
CAN65484.1 | 8.7e-55 | 31.67 | hypothetical protein VITISV_029474 [Vitis vinifera] | [more] |
CAN72359.1 | 1.1e-54 | 31.90 | hypothetical protein VITISV_000131 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
P0C2F6 | 2.0e-22 | 28.47 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
P08548 | 9.4e-04 | 25.89 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A803P465 | 2.0e-57 | 34.16 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A5N5H648 | 7.6e-57 | 31.54 | Ribonuclease H protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674... | [more] |
A0A438H8I3 | 1.4e-55 | 32.13 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_629 P... | [more] |
A0A438EXL3 | 2.5e-55 | 32.13 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_220 P... | [more] |
A5BCI7 | 4.2e-55 | 31.67 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 1.4e-10 | 30.43 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |