Moc04g27510 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g27510
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Integrase catalytic domain-containing protein
Location	chr4: 20314044 .. 20314412 (-)
RNA-Seq Expression	Moc04g27510
Synteny	Moc04g27510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGACTTGGGTGTCTTGCGGAATTTTCTTGGACTTGAAGTTAGTTATTCTTCTGTTGGGATATCTGTTAATCAAGCTGAGTATGCCCGCGATGTGCTTACTTGGTTTGGTATGCTTGCTTCCAAACTTTGTCATACTCCTATTGCACTTATTGCTTCATCTGATGTTGGTTCACCCTGTACTGTCGAGAATGCTCATACTTATCGAGCTATGGTTGGTGCCTTGCAATATCTCACATTTACTCGATCAGATATCACGTTTTCTGTTGGGAAGTTATCTCAACATATGCATGCCCCTTACGTTTTCTGTTGGGAAGTTATCTCAACATATGCATGCCCCTTTTTCATCTCATTTGATTGCAGCTAA

mRNA sequence

ATGACTGACTTGGGTGTCTTGCGGAATTTTCTTGGACTTGAAGTTAGTTATTCTTCTGTTGGGATATCTGTTAATCAAGCTGAGTATGCCCGCGATGTGCTTACTTGGTTTGGTATGCTTGCTTCCAAACTTTGTCATACTCCTATTGCACTTATTGCTTCATCTGATGTTGGTTCACCCTGTACTGTCGAGAATGCTCATACTTATCGAGCTATGGTTGGTGCCTTGCAATATCTCACATTTACTCGATCAGATATCACGTTTTCTGTTGGGAAGTTATCTCAACATATGCATGCCCCTTACGTTTTCTGTTGGGAAGTTATCTCAACATATGCATGCCCCTTTTTCATCTCATTTGATTGCAGCTAA

Coding sequence (CDS)

ATGACTGACTTGGGTGTCTTGCGGAATTTTCTTGGACTTGAAGTTAGTTATTCTTCTGTTGGGATATCTGTTAATCAAGCTGAGTATGCCCGCGATGTGCTTACTTGGTTTGGTATGCTTGCTTCCAAACTTTGTCATACTCCTATTGCACTTATTGCTTCATCTGATGTTGGTTCACCCTGTACTGTCGAGAATGCTCATACTTATCGAGCTATGGTTGGTGCCTTGCAATATCTCACATTTACTCGATCAGATATCACGTTTTCTGTTGGGAAGTTATCTCAACATATGCATGCCCCTTACGTTTTCTGTTGGGAAGTTATCTCAACATATGCATGCCCCTTTTTCATCTCATTTGATTGCAGCTAA

Protein sequence

MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSPCTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVFCWEVISTYACPFFISFDCS

Homology

[Close]

BLAST of Moc04g27510 vs. NCBI nr
Match: XP_022152303.1 (uncharacterized protein LOC111020051 [Momordica charantia])

HSP 1 Score: 210.7 bits (535), Expect = 7.1e-51
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP
Sbjct: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVFCWEVI 109
           CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVF   V+
Sbjct: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVFSKRVL 108

[Close]

BLAST of Moc04g27510 vs. NCBI nr
Match: XP_022154318.1 (uncharacterized protein LOC111021613 [Momordica charantia])

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-36
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLGVLR FLGLEVS+SS+GI VNQA+YARDVL  FGMLASK CHT IAL A SDVGSP
Sbjct: 1   MTDLGVLRYFLGLEVSHSSIGIYVNQAKYARDVLIRFGMLASKPCHTTIALTAPSDVGSP 60

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPY 102
           CTVE+AH Y AMVGALQYLTF+R DI FSV KLSQHMHAP+
Sbjct: 61  CTVEDAHNYGAMVGALQYLTFSRPDIAFSVRKLSQHMHAPF 101

[Close]

BLAST of Moc04g27510 vs. NCBI nr
Match: XP_022152156.1 (uncharacterized protein LOC111019945 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-29
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLG L  FLGLE++Y+S GI VNQA+Y RD+L  FGML++K C TP+AL+ SSD+G P
Sbjct: 121 MTDLGNLHYFLGLEITYTSGGILVNQAKYTRDILKRFGMLSAKPCSTPLALVNSSDLGEP 180

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVF 104
           C+ E+A  YR+++GA  YLTF+R DI FSV KLSQHMH P+V+
Sbjct: 181 CSTEDARNYRSLIGAPNYLTFSRPDIAFSVSKLSQHMHKPFVY 223

[Close]

BLAST of Moc04g27510 vs. NCBI nr
Match: XP_022139699.1 (uncharacterized protein LOC111010547 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 58/101 (57.43%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLG L+ FLGLE+SY++ G+ +N+A+Y RDVL  FGML++K C TP++L +++D+G+ 
Sbjct: 1   MTDLGALKYFLGLEISYTNNGLFINEAKYTRDVLQRFGMLSAKPCTTPMSLSSTTDIGAS 60

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPY 102
           C+ E+   YR+++G+L YLTFTR DITF+VGKLSQ MHAP+
Sbjct: 61  CSAEDIRNYRSLIGSLHYLTFTRPDITFAVGKLSQFMHAPW 101

[Close]

BLAST of Moc04g27510 vs. NCBI nr
Match: XP_022143489.1 (uncharacterized protein LOC111013365 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 57/100 (57.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDL  L+ FLGLE+SY++ G+S++QA+Y RDVL  FG+L++K C TP++L +++D+G+P
Sbjct: 129 MTDLEDLKYFLGLEISYTNNGLSISQAKYTRDVLQRFGILSAKPCTTPMSLSSTTDIGAP 188

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAP 101
           C++E+   YR+++G+L YLTFTR DI F+VGKLSQ MHAP
Sbjct: 189 CSIEDIRNYRSLIGSLHYLTFTRPDIAFAVGKLSQFMHAP 228

[Close]

BLAST of Moc04g27510 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-13
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           M DLG +  FLG+++     G+ ++Q +YA  +L   GML  K   TP+ L  +S V S 
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSV-ST 92

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAP 101
               +   +R++VGALQYLT TR DI+++V  + Q MH P
Sbjct: 93  AKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEP 131

[Close]

BLAST of Moc04g27510 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.9e-12
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = 0


Query: 7    LRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSPCTVENA 66
            L  FLG+E      G+ ++Q  Y  D+L    ML +K   TP+A      + S   + + 
Sbjct: 1166 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1225

Query: 67   HTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVFCWEVI 109
              YR +VG+LQYL FTR D++++V +LSQ+MH P    W  +
Sbjct: 1226 TEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNAL 1267

[Close]

BLAST of Moc04g27510 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 7    LRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSPCTVENA 66
            L  FLG+E      G+ ++Q  Y  D+L    M+ +K   TP+A      + S   + + 
Sbjct: 1183 LHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDP 1242

Query: 67   HTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAP 101
              YR +VG+LQYL FTR DI+++V +LSQ MH P
Sbjct: 1243 TEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMP 1276

[Close]

BLAST of Moc04g27510 vs. ExPASy TrEMBL
Match: A0A6J1DEI1 (uncharacterized protein LOC111020051 OS=Momordica charantia OX=3673 GN=LOC111020051 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.5e-51
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP
Sbjct: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVFCWEVI 109
           CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVF   V+
Sbjct: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVFSKRVL 108

[Close]

BLAST of Moc04g27510 vs. ExPASy TrEMBL
Match: A0A6J1DK06 (uncharacterized protein LOC111021613 OS=Momordica charantia OX=3673 GN=LOC111021613 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.3e-37
Identity = 82/101 (81.19%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLGVLR FLGLEVS+SS+GI VNQA+YARDVL  FGMLASK CHT IAL A SDVGSP
Sbjct: 1   MTDLGVLRYFLGLEVSHSSIGIYVNQAKYARDVLIRFGMLASKPCHTTIALTAPSDVGSP 60

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPY 102
           CTVE+AH Y AMVGALQYLTF+R DI FSV KLSQHMHAP+
Sbjct: 61  CTVEDAHNYGAMVGALQYLTFSRPDIAFSVRKLSQHMHAPF 101

[Close]

BLAST of Moc04g27510 vs. ExPASy TrEMBL
Match: A0A6J1DGS4 (uncharacterized protein LOC111019945 OS=Momordica charantia OX=3673 GN=LOC111019945 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLG L  FLGLE++Y+S GI VNQA+Y RD+L  FGML++K C TP+AL+ SSD+G P
Sbjct: 121 MTDLGNLHYFLGLEITYTSGGILVNQAKYTRDILKRFGMLSAKPCSTPLALVNSSDLGEP 180

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPYVF 104
           C+ E+A  YR+++GA  YLTF+R DI FSV KLSQHMH P+V+
Sbjct: 181 CSTEDARNYRSLIGAPNYLTFSRPDIAFSVSKLSQHMHKPFVY 223

[Close]

BLAST of Moc04g27510 vs. ExPASy TrEMBL
Match: A0A6J1CDR7 (uncharacterized protein LOC111010547 OS=Momordica charantia OX=3673 GN=LOC111010547 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 58/101 (57.43%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDLG L+ FLGLE+SY++ G+ +N+A+Y RDVL  FGML++K C TP++L +++D+G+ 
Sbjct: 1   MTDLGALKYFLGLEISYTNNGLFINEAKYTRDVLQRFGMLSAKPCTTPMSLSSTTDIGAS 60

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAPY 102
           C+ E+   YR+++G+L YLTFTR DITF+VGKLSQ MHAP+
Sbjct: 61  CSAEDIRNYRSLIGSLHYLTFTRPDITFAVGKLSQFMHAPW 101

[Close]

BLAST of Moc04g27510 vs. ExPASy TrEMBL
Match: A0A6J1CPG5 (uncharacterized protein LOC111013365 OS=Momordica charantia OX=3673 GN=LOC111013365 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.8e-27
Identity = 57/100 (57.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           MTDL  L+ FLGLE+SY++ G+S++QA+Y RDVL  FG+L++K C TP++L +++D+G+P
Sbjct: 129 MTDLEDLKYFLGLEISYTNNGLSISQAKYTRDVLQRFGILSAKPCTTPMSLSSTTDIGAP 188

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAP 101
           C++E+   YR+++G+L YLTFTR DI F+VGKLSQ MHAP
Sbjct: 189 CSIEDIRNYRSLIGSLHYLTFTRPDIAFAVGKLSQFMHAP 228

[Close]

BLAST of Moc04g27510 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-14
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           + DLG L+ FLGLE++ S+ GI++ Q +YA D+L   G+L  K    P+    +    S 
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAP 101
               +A  YR ++G L YL  TR DI+F+V KLSQ   AP
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAP 409

[Close]

BLAST of Moc04g27510 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-14
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1   MTDLGVLRNFLGLEVSYSSVGISVNQAEYARDVLTWFGMLASKLCHTPIALIASSDVGSP 60
           M DLG +  FLG+++     G+ ++Q +YA  +L   GML  K   TP+ L  +S V S 
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSV-ST 92

Query: 61  CTVENAHTYRAMVGALQYLTFTRSDITFSVGKLSQHMHAP 101
               +   +R++VGALQYLT TR DI+++V  + Q MH P
Sbjct: 93  AKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEP 131

The following BLAST results are available for this feature:

BLAST of Moc04g27510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152303.1	7.1e-51	96.30	uncharacterized protein LOC111020051 [Momordica charantia]	[more]
XP_022154318.1	1.3e-36	81.19	uncharacterized protein LOC111021613 [Momordica charantia]	[more]
XP_022152156.1	2.6e-29	62.14	uncharacterized protein LOC111019945 [Momordica charantia]	[more]
XP_022139699.1	3.2e-27	57.43	uncharacterized protein LOC111010547 [Momordica charantia]	[more]
XP_022143489.1	1.6e-26	57.00	uncharacterized protein LOC111013365 [Momordica charantia]	[more]

BLAST of Moc04g27510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	8.0e-13	40.00	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	8.9e-12	36.27	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.6e-11	38.30	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc04g27510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DEI1	3.5e-51	96.30	uncharacterized protein LOC111020051 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DK06	6.3e-37	81.19	uncharacterized protein LOC111021613 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DGS4	1.3e-29	62.14	uncharacterized protein LOC111019945 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1CDR7	1.6e-27	57.43	uncharacterized protein LOC111010547 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1CPG5	7.8e-27	57.00	uncharacterized protein LOC111013365 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Moc04g27510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.6e-14	41.00	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.7e-14	40.00	DNA/RNA polymerases superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g27510.1	Moc04g27510.1	mRNA