Moc04g26690 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g26690
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Locationchr4: 19598996 .. 19601017 (-)
RNA-Seq ExpressionMoc04g26690
SyntenyMoc04g26690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTAGCTCTTGGTTTCAATTTTGTCCTTTATTTTCTAACAATTTGAAAGCAAAATACTCTCATCTACCTATGGCTGCTATCCAACTACTGTCGATGGTCACAGAAGTTACTGATTTTCTTTGAGTAGTTGGAGATCGACTACATCTTCATTGCTGCTTAGCCCGCTGCCATTGCTGCTGATGCCACCACTACCTCCGTTGCTACTACCACTATCGCCACGACGGCTTCCATCACTGTGTTCGTCACTGATCCGCCTACCGTTGCAGCTGACACCGTTTTAGTTGTCGTTGCTGATCCCGGGACGTCTACTGCCGTTGCTGTCGAAACTAACAAATTTAAGAAAGACAACAAAATAGTCTGTGGGCATCTTTTCAACTTTATGAACGACTCTCTCTTTGATCTCTTTGTAGTAAAAAAATCTGCAAAGGTCATTTGGGACACGTTAGATTCTAGATCTGGTAGGGATGATGTAAGTAGGAGGAAGTACGTCGTCGGTAAATGACTACAATTTCAAATGTCACACGGCAAATCGGTGATGTATCAGGTTAATGAGTACGAGAACCTGGTGGCAAGTTCGTTGTCTAAAGGTAAAAAGATGTGCGAGATTCTTCAGACCAATGTGTTGGTCGAGAAATTTCCTCCTTCCTGGAGTGATTATCGCAAAGAAGAAAGACTTGGACTCTGTAAGAATTGATCAGTCACGTGTGCACGGAGGAAGCCAACAAGATAAATGATAAGCTTTCTTCCCAATCCCTAAATCCAGTTAAAGTTAACTTAGTTGAATCTTCTAGTGCTTCTCGATAATTTCCACAAGCACAAATCCCGCTTTTTATAGGCCCAAAAATTCTTTCACAAAATAATCCATCTTTTTCAGGTTTATTGGTTTTGTAATGAAAAGTATAGGGTTTTGTTACCTCTCCAACTATCTCGCCATTAGGTAGGGTTTTATTGGCCCAAGTACTTATTTGTTGAGGAGAAACTAATCCAATTCGGAGTTGTTGATGTTTATACCGATCGATCATAGAAAAAATTTTAAGGACATGTTCAAAAAACAAAGGTATGCTATGTCTGTGGAAAACCCAGACACAAATCCTATCAGTGCATCTAGAGGAAAAATAGGAAAGATCAAAGGGCTACTCCACAAGCCAACCTTGCAGATATGGACGACATCATTGCCTCTGTGGTTGTGGAAGCAAATCTGGTAGAGAACAAATCCTACTGGATTCTTGACACAGGAGCATCCAGACATTTCTGCTCGAACCGTGACCTCTTCCACAACTTTCAAGACTCCGCTAATGGCAAATATATTTTTATGGCGAACTCTGCATAGCTAGAGTACTTGGGAAATGGAAGGTTCTCTTGAAACTCACATCTGAAAAAATTTTACCATTAAGTAATGTGTTGTATGTTCCTTCACTGCGTATGAATTTGGTGTCAGCAGGTCTGCTGAACCGAGCCGGACTTAGGATTTGTTTGAGGCCGACAAGGTTATAATCACAAAAAATTGTGACTTTGTTGGTAAGGGCTATTTAGCAGATATTTTGTTTGTTCTCAATATTACTTCTTCACATGAAATTAATTCTAGTTCTACTTACATCATTGAGTCTCTTGATGTGTGACATGGTAGATTAGGACATGTGAATATTGCACGATTAAAAGACTTAGAACTTTAAATTTAATTAATGCTTCTGATTTGCCTGAAACTTCAAAATCTGATTTTTCTATAAAAATCTTTAAATCGTTAATTGTTTTGTGGAAAATTCTTGGAAGTTTTATTTTAAAACATAAAATCTTCCAGATTTAAAATCCTCAAATTTTCAATTATTTAGAAGGTTTTAAGCTTGTTTTGTTGAGAAATTTTTTTATAAATTAACGTGTATTGATAAGTATTGATTCTTATGCTTGGAGGAGTATCTTATGAGGTCACGAGCTTTTTGAAAAGGGTTATCGCTGGCAGATAGGAAATGGTCCGGATGTGACTATAGAAATATATGGATCCTTGGCTCCCAAGGGATAG

mRNA sequence

ATGAATTTAGCTCTTGGTTTCAATTTTCCCGCTGCCATTGCTGCTGATGCCACCACTACCTCCGTTGCTACTACCACTATCGCCACGACGGCTTCCATCACTGTGTTCGTCACTGATCCGCCTACCGTTGCAGCTGACACCGTTTTAGTTGTCGTTGCTGATCCCGGGACGTCTACTGCCGTTAATGAGTACGAGAACCTGGTGGCAAGTTCGTTGTCTAAAGGTAAAAAGATGTGCGAGATTCTTCAGACCAATGTGTTGGTCGAGAAATTTCCTCCTTCCTGGAGTGATTATCGCAAAGAAGAAAGACTTGGACTCTGTCACGAGCTTTTTGAAAAGGGTTATCGCTGGCAGATAGGAAATGGTCCGGATGTGACTATAGAAATATATGGATCCTTGGCTCCCAAGGGATAG

Coding sequence (CDS)

ATGAATTTAGCTCTTGGTTTCAATTTTCCCGCTGCCATTGCTGCTGATGCCACCACTACCTCCGTTGCTACTACCACTATCGCCACGACGGCTTCCATCACTGTGTTCGTCACTGATCCGCCTACCGTTGCAGCTGACACCGTTTTAGTTGTCGTTGCTGATCCCGGGACGTCTACTGCCGTTAATGAGTACGAGAACCTGGTGGCAAGTTCGTTGTCTAAAGGTAAAAAGATGTGCGAGATTCTTCAGACCAATGTGTTGGTCGAGAAATTTCCTCCTTCCTGGAGTGATTATCGCAAAGAAGAAAGACTTGGACTCTGTCACGAGCTTTTTGAAAAGGGTTATCGCTGGCAGATAGGAAATGGTCCGGATGTGACTATAGAAATATATGGATCCTTGGCTCCCAAGGGATAG

Protein sequence

MNLALGFNFPAAIAADATTTSVATTTIATTASITVFVTDPPTVAADTVLVVVADPGTSTAVNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERLGLCHELFEKGYRWQIGNGPDVTIEIYGSLAPKG
Homology
[Close]
BLAST of Moc04g26690 vs. NCBI nr
Match: KAA0026033.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERL 105
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DY+++  +
Sbjct: 156 IHEYENLVANVLSEGVKMCEILQANVLLEKFPPSWNDYQQDSEI 199

[Close]
BLAST of Moc04g26690 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 160 IHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYR 198

[Close]
BLAST of Moc04g26690 vs. NCBI nr
Match: KAA0040355.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 11  IHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYR 49

[Close]
BLAST of Moc04g26690 vs. NCBI nr
Match: KAA0058501.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 115 IHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYR 153

[Close]
BLAST of Moc04g26690 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 160 IHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYR 198

[Close]
BLAST of Moc04g26690 vs. ExPASy TrEMBL
Match: A0A5A7SN16 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00180 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 29/44 (65.91%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYRKEERL 105
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DY+++  +
Sbjct: 156 IHEYENLVANVLSEGVKMCEILQANVLLEKFPPSWNDYQQDSEI 199

[Close]
BLAST of Moc04g26690 vs. ExPASy TrEMBL
Match: A0A5D3C9B4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002320 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 11  IHEYENLVANVLSEGTKMCEILQANVLLEKFPPSWNDYR 49

[Close]
BLAST of Moc04g26690 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 56  IHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYR 94

[Close]
BLAST of Moc04g26690 vs. ExPASy TrEMBL
Match: A0A5A7UYD5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00940 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 115 IHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYR 153

[Close]
BLAST of Moc04g26690 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 61  VNEYENLVASSLSKGKKMCEILQTNVLVEKFPPSWSDYR 100
           ++EYENLVA+ LS+G KMCEILQ NVL+EKFPPSW+DYR
Sbjct: 160 IHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYR 198

The following BLAST results are available for this feature:
BLAST of Moc04g26690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026033.12.2e-0865.91ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
TYK04394.12.9e-0876.92ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0040355.12.9e-0876.92ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058501.12.9e-0876.92ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0056761.12.9e-0876.92ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Moc04g26690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g26690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SN161.1e-0865.91Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C9B41.4e-0876.92Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DJE21.4e-0876.92Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UYD51.4e-0876.92Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DSQ31.4e-0876.92Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Moc04g26690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g26690.1Moc04g26690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding