Moc04g26370 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g26370
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon opus
Locationchr4: 19235523 .. 19236835 (+)
RNA-Seq ExpressionMoc04g26370
SyntenyMoc04g26370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGTCAACAGCAGGAAGTGAAGCCAACAACAAGTGCCTCCAATTCTATGGAGAATCTAATGAGAGATTACATGGTGAAGAATGATGCAACACTCCAAAGCCAAACAGCTTCTCTAAGAAATTTGGAAGTCCAATTGGGGCAAATGGCGAATGAGTTGAAAAATAGGCCCATTGGTACTTTGCCTAATGACACTGAAAATCCCAAGAGATAGGGGAAAAAACAGTGTAAAGCTATAACTATAAGGTGTGGCAAGGCTTTACCCTAATTGCGAGCAGACAAAGCAGACTGTCATGTAGAGGAAACTGCAGAAAATGTGCTGGCTGTGATAATGGAGTGAACGATGCTGGAGCATCGCAGGAGCAGATTTTAGAATAAAAAATTCACATAGAGACAGAAGCTCAACCTCAACCTAAAATTAGCAAAGGAAAAATAGCAGCAGAAGCAGAATCATTGAAGGAAATAGAACCAGGGGAATATAGACCACCACCCTCTATCCTCAAAGGCAAAACCAAGATAATCAATTCAAGCAATTTTTGGATGTGTTGAAGCAACTCCACATCAATATATCCTTAGTTCAGGCTCTTGAGCAAATGCCTAACTATGCAAAATTTTTTAAGAATATCTGGATTAAGAAAATGAGGTTAGGAGAGTTCGAAACCATAGCTTCAACCAAGGAGTGCAGTGCAATTTTAACAGACAAGCTTCCACAGAAAATCTGGGATCCAGGGAGTTTTACTATTCCAATCTCTATGGGTGGAAAGAATGTGAGCCATGCTCTATGCAATTTGGGTGTAAGCATAAACCTCATCCCATTATCAGTATATCAGAGGTTGGGTATTGGTGAAGCAAGGCCCACTCGGTGACTTTACAGCTAGCTGACAGGTCAATCACTCACTTAGAGGACAAGATCGAAGATGTGTTAGTGCAGGTGGACAATTCATTTTCCCAGCTGATTTCATCATCCTCGATTATGAAGCAGACAATGAGATCCCAATAATTTTGGGGAGGCCTTTCCTATCTACTAGTAGAGCGCTAATAGATGTGCATAATGGAGAGCTTACCATGAGAGTGAACGATCAACAGGTTACCTTTTCTTTTTTTAATTCTGTTAAATTTCCTGTTGATGTTAGGGAATGTTCTCTCTTACGACTTGCAGATGACTTGCTGATTAAGGAAATACAAAAGGAGACCTTGTTGGATCACTTGGAGAAAGAACTTACCATAGCCTACGAACATGTAGGGGACACTGTTGATGCTGGAGCATCTCAGCCCACGAGCGGCTCCAGTGAAGAAGAAGAAGATGATTGA

mRNA sequence

ATGTCTAGTCAACAGCAGGAAGTGAAGCCAACAACAAGTGCCTCCAATTCTATGGAGAATCTAATGAGAGATTACATGGTGAAGAATGATGCAACACTCCAAAGCCAAACAGCTTCTCTAAGAAATTTGGAAGTCCAATTGGGGCAAATGGCGAATGAGTTGAAAAATAGGCCCATTGATGACTTGCTGATTAAGGAAATACAAAAGGAGACCTTGTTGGATCACTTGGAGAAAGAACTTACCATAGCCTACGAACATGTAGGGGACACTGTTGATGCTGGAGCATCTCAGCCCACGAGCGGCTCCAGTGAAGAAGAAGAAGATGATTGA

Coding sequence (CDS)

ATGTCTAGTCAACAGCAGGAAGTGAAGCCAACAACAAGTGCCTCCAATTCTATGGAGAATCTAATGAGAGATTACATGGTGAAGAATGATGCAACACTCCAAAGCCAAACAGCTTCTCTAAGAAATTTGGAAGTCCAATTGGGGCAAATGGCGAATGAGTTGAAAAATAGGCCCATTGATGACTTGCTGATTAAGGAAATACAAAAGGAGACCTTGTTGGATCACTTGGAGAAAGAACTTACCATAGCCTACGAACATGTAGGGGACACTGTTGATGCTGGAGCATCTCAGCCCACGAGCGGCTCCAGTGAAGAAGAAGAAGATGATTGA

Protein sequence

MSSQQQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRPIDDLLIKEIQKETLLDHLEKELTIAYEHVGDTVDAGASQPTSGSSEEEEDD
Homology
BLAST of Moc04g26370 vs. NCBI nr
Match: XP_022158490.1 (uncharacterized protein LOC111024970 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-11
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1   MSSQQQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRPID 60
           M +QQQ  +P  ++SNSME +MR+YM +NDA +QSQ A  RNLEVQLGQMAN+LKNRP  
Sbjct: 238 MPNQQQGTRPAANSSNSMETMMREYMTRNDALIQSQAAVFRNLEVQLGQMANKLKNRP-- 297

Query: 61  DLLIKEIQKETLLDHLEKEL 81
                 +Q + +  H E +L
Sbjct: 298 -----RVQTDKMEHHAEPQL 310

BLAST of Moc04g26370 vs. NCBI nr
Match: XP_030509134.1 (uncharacterized protein LOC115723804 [Cannabis sativa])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 5   QQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRP 59
           QQ  +P  S ++S+E+LMRDYM KNDA +QSQ ASLRNLEVQLGQ+AN+LKNRP
Sbjct: 110 QQPYQPQGSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKNRP 163

BLAST of Moc04g26370 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 5   QQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRP 59
           QQ  +P  S ++S+E+LMRDYM KNDA +QSQ ASLRNLEVQLGQ+AN+LKNRP
Sbjct: 377 QQPHQPQGSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKNRP 430

BLAST of Moc04g26370 vs. NCBI nr
Match: XP_030510138.1 (uncharacterized protein LOC115724905 [Cannabis sativa])

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 5   QQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRP 59
           QQ  +P  S ++S+E+LMRDYM KNDA +QSQ ASLRNLEVQLGQ+AN+LKNRP
Sbjct: 330 QQPHQPQGSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKNRP 383

BLAST of Moc04g26370 vs. NCBI nr
Match: XP_030503898.1 (uncharacterized protein LOC115719117 [Cannabis sativa])

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 5   QQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRP 59
           QQ  +P  S ++S+E+LMRDYM KNDA +QSQ ASLRNLEVQLGQ+AN+LKNRP
Sbjct: 331 QQPHQPQGSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLANDLKNRP 384

BLAST of Moc04g26370 vs. ExPASy TrEMBL
Match: A0A6J1DVZ9 (uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024970 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1   MSSQQQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRPID 60
           M +QQQ  +P  ++SNSME +MR+YM +NDA +QSQ A  RNLEVQLGQMAN+LKNRP  
Sbjct: 238 MPNQQQGTRPAANSSNSMETMMREYMTRNDALIQSQAAVFRNLEVQLGQMANKLKNRP-- 297

Query: 61  DLLIKEIQKETLLDHLEKEL 81
                 +Q + +  H E +L
Sbjct: 298 -----RVQTDKMEHHAEPQL 310

BLAST of Moc04g26370 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 3   SQQQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRP 59
           +Q+ +  P  + ++++EN+M++YM + DA +QSQ AS+RN E QLGQ+ANELKNRP
Sbjct: 192 NQRTQTPPVQNNNSNLENMMKEYMARTDAVIQSQAASMRNFETQLGQLANELKNRP 247

BLAST of Moc04g26370 vs. ExPASy TrEMBL
Match: A0A5B6UIR1 (Retrovirus-related Pol polyprotein from transposon opus OS=Gossypium australe OX=47621 GN=EPI10_003826 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 3   SQQQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNR 58
           +Q  +  P T +SNS+ENL++ YMVKND  +QSQ A+L+NLE Q+GQ+A EL++R
Sbjct: 67  NQHAQKPPQTKSSNSLENLLKAYMVKNDVLIQSQAATLKNLENQMGQLATELRSR 121

BLAST of Moc04g26370 vs. ExPASy TrEMBL
Match: A0A6J1G7Q6 (uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC111451598 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 2   SSQQQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRPIDD 61
           +SQ Q +  T      +E+L+++YM +NDA +QSQ  SLRNLEVQ+GQ+ANEL+NRP+  
Sbjct: 383 TSQAQHISGTL-----LESLIKEYMARNDAVIQSQQVSLRNLEVQVGQLANELRNRPLGK 438

Query: 62  L 63
           L
Sbjct: 443 L 438

BLAST of Moc04g26370 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 4   QQQEVKPTTSASNSMENLMRDYMVKNDATLQSQTASLRNLEVQLGQMANELKNRPIDDL 63
           Q  E   +  +  S+EN+M+ YM  NDAT+QSQ ASLRNLE+Q+GQ+A +LK+RP+  L
Sbjct: 237 QMVEHNQSKGSITSLENIMKQYMANNDATVQSQAASLRNLELQVGQLAMDLKSRPVGAL 295

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158490.16.5e-1152.50uncharacterized protein LOC111024970 [Momordica charantia][more]
XP_030509134.12.5e-1070.37uncharacterized protein LOC115723804 [Cannabis sativa][more]
XP_030509259.14.2e-1070.37uncharacterized protein LOC115723937 [Cannabis sativa][more]
XP_030510138.14.2e-1070.37uncharacterized protein LOC115724905 [Cannabis sativa][more]
XP_030503898.14.2e-1070.37uncharacterized protein LOC115719117 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DVZ93.1e-1152.50uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DYG02.7e-0751.79uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5B6UIR12.3e-0654.55Retrovirus-related Pol polyprotein from transposon opus OS=Gossypium australe OX... [more]
A0A6J1G7Q63.0e-0652.46uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC1114515... [more]
A0A6J1DWK14.0e-0652.54uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g26370.1Moc04g26370.1mRNA