Moc04g26260 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g26260
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr4: 19118615 .. 19119663 (+)
RNA-Seq Expression	Moc04g26260
Synteny	Moc04g26260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCCAGAAACCTTACTGGAAACACTTACTGAAGCTAACAGATTTGAAATGGATGAAATAGCCTTTAGTTTGATTAACCTATATTTAGAGGATAATGTTCTTTGTCAAATCGATGAGGAGGATATTGCTGCAAAACTATGGGCTATGTTAGAAAATTTGTTCATTAGTAAGTCGGAGCCTAATAAAATTTATCTTAAGGAGTGGTTCTTTGGATTCAGGATGGATACTTCTAAGAGCTTGGATGATAACTTGGATGGACTTAACAAGATTTGCCTTGAATTTGCAAGTATAGGGGAGAAAATGTCAAATGAAAACCAAGCAGTGATATTGCTAAATTCATTACTTGAGAGCTACAAGGAAATTAAGTCAGCGATTAAATATGGTAGGGATTCATTAACTTTAGACTTAGTTCTGATCAAAAGATCCGGAAATTAAATCAGAAAAGAAAGATGCAAAAGTTCTTTTGACTCGTGGAAGAACATAACATAAAAATACAAGTCAAGGTAAACACGGTGGAAAATCTAGATCGAAATCAAGAGGAAAGGTTAAGAAATGTTGTTGTTGTCACAAAGAAGGACACATAAAACGATATTATTATATGTTGAAAGCTAAAATAAAGCAAGGTAACGTGCAGAGAAAAAAGAAGAAGGTAGTTCAGCAAACATACATGATAGTTATAATCAACTGAGGTTCTAGCAGTCTCAGATTATCGTTGTGAAGAGGAGTGGATTTTGGATTCTAGATGTTCCTTTCACACAAATCCTCATAGAGATTATTTCTAAGACTTTAGTGAATATGAAGGGGAAAACATTCTGATGGGAAATGATCAGAAGTGTAATATCAAGAGAATAGGATCTTTGAGGTTAAGGTTAGCTGATGGTATTGAAAAACTTCTTACGTTAGTGAGGTATATGCCTGGATTCAAGAGAAATCTCATCTCTCTTGGTACTTTGGATAAGGTCGGTGTTTTGAAAGTTTATAAAGGTTCGCTGCTAAAATTAAAAGGAGTTCTCAAGAATGGGTTATATGTTCTTCAAGGATGA

mRNA sequence

ATGGATGAGCCAGAAACCTTACTGGAAACACTTACTGAAGCTAACAGATTTGAAATGGATGAAATAGCCTTTAGTTTGATTAACCTATATTTAGAGGATAATGTTCTTTGTCAAATCGATGAGGAGGATATTGCTGCAAAACTATGGGCTATTGAATATGAAGGGGAAAACATTCTGATGGGAAATGATCAGAAGTGTAATATCAAGAGAATAGGATCTTTGAGGTTAAGGTTAGCTGATGGTATTGAAAAACTTCTTACGTTAGTGAGGTATATGCCTGGATTCAAGAGAAATCTCATCTCTCTTGGTACTTTGGATAAGGTCGGTGTTTTGAAAGTTTATAAAGGTTCGCTGCTAAAATTAAAAGGAGTTCTCAAGAATGGGTTATATGTTCTTCAAGGATGA

Coding sequence (CDS)

ATGGATGAGCCAGAAACCTTACTGGAAACACTTACTGAAGCTAACAGATTTGAAATGGATGAAATAGCCTTTAGTTTGATTAACCTATATTTAGAGGATAATGTTCTTTGTCAAATCGATGAGGAGGATATTGCTGCAAAACTATGGGCTATTGAATATGAAGGGGAAAACATTCTGATGGGAAATGATCAGAAGTGTAATATCAAGAGAATAGGATCTTTGAGGTTAAGGTTAGCTGATGGTATTGAAAAACTTCTTACGTTAGTGAGGTATATGCCTGGATTCAAGAGAAATCTCATCTCTCTTGGTACTTTGGATAAGGTCGGTGTTTTGAAAGTTTATAAAGGTTCGCTGCTAAAATTAAAAGGAGTTCTCAAGAATGGGTTATATGTTCTTCAAGGATGA

Protein sequence

MDEPETLLETLTEANRFEMDEIAFSLINLYLEDNVLCQIDEEDIAAKLWAIEYEGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKVGVLKVYKGSLLKLKGVLKNGLYVLQG

Homology

[Close]

BLAST of Moc04g26260 vs. NCBI nr
Match: CAN73519.1 (hypothetical protein VITISV_010313 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 43  DIAAKLWAIEYEGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISL 102
           DIA  L  I+ + E ++MGN++ C +  IGS++LRL DG++K LT V Y+  FK NLISL
Sbjct: 51  DIANVLIYIKLKEEKVIMGNNEACKVFGIGSIKLRLHDGMKKTLTNVMYVLDFKGNLISL 110

Query: 103 GTLDKV--------GVLKVYKGSLLKLKGVLKNGLYVLQG 135
           G LD +        G LK+ KG+++ +KG+ KNGLY LQG
Sbjct: 111 GVLDSMGCTIKIENGTLKILKGAMIVMKGLRKNGLYTLQG 150

[Close]

BLAST of Moc04g26260 vs. NCBI nr
Match: KAG6726906.1 (hypothetical protein I3842_02G103200, partial [Carya illinoinensis])

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-14
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 52  EYEGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLD----- 111
           E +G  +++GN++ C I  IGS+RL++ DG E++L  VR++P  KRNLISLG LD     
Sbjct: 13  ELDGGQVILGNNKSCKIMGIGSVRLKMHDGTERVLREVRFIPELKRNLISLGMLDLSGHT 72

Query: 112 ---KVGVLKVYKGSLLKLKGVLKNGLYVLQG 135
              + GVL+V +GSL+ +KGV+KNGLY L G
Sbjct: 73  FKSEAGVLRVTRGSLVIMKGVIKNGLYTLLG 103

[Close]

BLAST of Moc04g26260 vs. NCBI nr
Match: KAG8378472.1 (hypothetical protein BUALT_Bualt08G0140700 [Buddleja alternifolia])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 54  EGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKV----- 113
           EG ++L+GN++ C ++ IGS+R+++ +GIEK+L  VRY+P  KRNLISLG LD +     
Sbjct: 150 EGGSVLLGNNKSCKVQGIGSVRIKMFNGIEKVLKQVRYIPELKRNLISLGMLDDLGYSMK 209

Query: 114 ---GVLKVYKGSLLKLKGVLKNGLYVLQG 135
              G LKV KGS++ +KG+ +NG+Y L G
Sbjct: 210 LESGTLKVVKGSMVIMKGIRRNGIYSLIG 238

[Close]

BLAST of Moc04g26260 vs. NCBI nr
Match: KAG8367168.1 (hypothetical protein BUALT_Bualt16G0044500 [Buddleja alternifolia])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 54  EGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKV----- 113
           EG ++L+GN++ C ++ IGS+R+++ +GIEK+L  VRY+P  KRNLISLG LD +     
Sbjct: 658 EGGSVLLGNNKSCKVQGIGSVRIKMFNGIEKVLKQVRYIPELKRNLISLGMLDDLGYSMK 717

Query: 114 ---GVLKVYKGSLLKLKGVLKNGLYVLQG 135
              G LKV KGS++ +KG+ +NG+Y L G
Sbjct: 718 LESGTLKVVKGSMVIMKGIRRNGIYSLIG 746

[Close]

BLAST of Moc04g26260 vs. NCBI nr
Match: KAG8362995.1 (hypothetical protein BUALT_BualtUnG0016000 [Buddleja alternifolia])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 54  EGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKV----- 113
           EG ++L+GN++ C ++ IGS+R+++ +GIEK+L  VRY+P  KRNLISLG LD +     
Sbjct: 150 EGGSVLLGNNKSCKVQGIGSVRIKMFNGIEKVLKQVRYIPELKRNLISLGMLDDLGYSMK 209

Query: 114 ---GVLKVYKGSLLKLKGVLKNGLYVLQG 135
              G LKV KGS++ +KG+ +NG+Y L G
Sbjct: 210 LESGTLKVVKGSMVIMKGIRRNGIYSLIG 238

[Close]

BLAST of Moc04g26260 vs. ExPASy TrEMBL
Match: A5ALE4 (gag_pre-integrs domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_010313 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.5e-15
Identity = 48/100 (48.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 43  DIAAKLWAIEYEGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISL 102
           DIA  L  I+ + E ++MGN++ C +  IGS++LRL DG++K LT V Y+  FK NLISL
Sbjct: 51  DIANVLIYIKLKEEKVIMGNNEACKVFGIGSIKLRLHDGMKKTLTNVMYVLDFKGNLISL 110

Query: 103 GTLDKV--------GVLKVYKGSLLKLKGVLKNGLYVLQG 135
           G LD +        G LK+ KG+++ +KG+ KNGLY LQG
Sbjct: 111 GVLDSMGCTIKIENGTLKILKGAMIVMKGLRKNGLYTLQG 150

[Close]

BLAST of Moc04g26260 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 54  EGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKV----- 113
           +G  +L+G++  C++K  GS+++   DG+ ++LT VRY+P  KRNLISLG LD+      
Sbjct: 313 DGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIK 372

Query: 114 ---GVLKVYKGSLLKLKGVLKNGLYVLQG 135
              GV+KV KGSL+KL+G L++GLYVL+G
Sbjct: 373 SENGVMKVTKGSLVKLRGTLRHGLYVLEG 401

[Close]

BLAST of Moc04g26260 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 54  EGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKV----- 113
           +G  +L+G++  C++K  GS+++   DG+ ++LT VRY+P  KRNLISLG LD+      
Sbjct: 313 DGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIK 372

Query: 114 ---GVLKVYKGSLLKLKGVLKNGLYVLQG 135
              GV+KV KGSL+KL+G L++GLYVL+G
Sbjct: 373 SENGVMKVTKGSLVKLRGTLRHGLYVLEG 401

[Close]

BLAST of Moc04g26260 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 54  EGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKV----- 113
           +G  +L+G++  C++K  GS+++   DG+ ++LT VRY+P  KRNLISLG LD+      
Sbjct: 143 DGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIK 202

Query: 114 ---GVLKVYKGSLLKLKGVLKNGLYVLQG 135
              GV+KV KGSL+KL+G L++GLYVL+G
Sbjct: 203 SENGVMKVTKGSLVKLRGTLRHGLYVLEG 231

[Close]

BLAST of Moc04g26260 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 54  EGENILMGNDQKCNIKRIGSLRLRLADGIEKLLTLVRYMPGFKRNLISLGTLDKV----- 113
           +G  +L+G++  C++K  GS+++   DG+ ++LT VRY+P  KRNLISLG LD+      
Sbjct: 313 DGGKVLLGDNGTCDVKGTGSVQIATHDGMVRILTNVRYVPKLKRNLISLGELDRSGCTIK 372

Query: 114 ---GVLKVYKGSLLKLKGVLKNGLYVLQG 135
              GV+KV KGSL+KL+G L++GLYVL+G
Sbjct: 373 SENGVMKVTKGSLVKLRGTLRHGLYVLEG 401

The following BLAST results are available for this feature:

BLAST of Moc04g26260 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN73519.1	1.5e-14	48.00	hypothetical protein VITISV_010313 [Vitis vinifera]	[more]
KAG6726906.1	5.9e-14	49.45	hypothetical protein I3842_02G103200, partial [Carya illinoinensis]	[more]
KAG8378472.1	1.7e-13	48.31	hypothetical protein BUALT_Bualt08G0140700 [Buddleja alternifolia]	[more]
KAG8367168.1	1.7e-13	48.31	hypothetical protein BUALT_Bualt16G0044500 [Buddleja alternifolia]	[more]
KAG8362995.1	1.7e-13	48.31	hypothetical protein BUALT_BualtUnG0016000 [Buddleja alternifolia]	[more]

BLAST of Moc04g26260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g26260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5ALE4	7.5e-15	48.00	gag_pre-integrs domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_0...	[more]
A0A5D3DNU1	2.4e-13	48.31	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7U2U7	2.4e-13	48.31	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3CTV2	2.4e-13	48.31	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	2.4e-13	48.31	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Moc04g26260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g26260.1	Moc04g26260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding