Moc04g25990 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g25990
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	HTH myb-type domain-containing protein
Location	chr4: 18914938 .. 18916083 (+)
RNA-Seq Expression	Moc04g25990
Synteny	Moc04g25990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGAGCACCCAGCCTGCCGACCCAACCTACCGAATCACCACTCACGCGCCGTACGTCGAGCAACGGACCCGGGCGACACCCCACTATTCGCGCCCCTACGCCGAGCCGAGGCAGGGCGGGGGCGCGAAATCGTCGGGCAAAGCCGAGCCCGCAACGTCGTGCGCGGTCTCTCACTTCCTTCCTTCCTTCATTTTGTTGCAGGACACGAGCCCTTCCATCGAGTGGGGGAGCGAAGGCGGGCGATCTCGTCTCACTCAAAGCAAGCGTGCCGCTTTCCAGATATAGTTTCTCGTGTGATGGGTGTTGGGTGGGATGACAAGTGCAGCGATCGTTGCTTGGTGTCACGTGGCTAAAACCTTACAATCTTGGGGCACCACGTTTCTCACATACAATCTTAAAATATAAAGTACAACTTAGAGTTTGCACGGATTTAAAAGGATTGTCCAACAAATGAAGTTTTGTGTGGCGTGCTGTGGGCGGAAGGGATGTTGCTGCGTGGTGGGCGCGCAAGGGGGCGTCGGTGGGCATGGGCGCGCGGGGTGGCGGTGGTGGGCGTTGGCTGCGCGCGCGGGAGGGCGCTTGGGGGCGTGGGCGCGCGCGCACGGGGTGGCAGTGGTGGGCGCGCGCGCGTGTGGCGGTGGTGGGCGTGGACCGCGCTTGTAGGGGGCGCTTGGAGGCGTGGGCGCGCGCGCAGGGAGCCGGTGGCGTTGGGCGCGCGCACGCAGGGGGGCGCTGGTGGGCTTGGATTTCGAAGGATAACCTCCAATGACTTAAGTTATGCGTGGTGCGCGCGCGGGCAGGATTTATCTGGTCGACTTATGATTTCGGAATGCTTTTGACAGAAGTACAGGTCGCATCGAAAACATTTGCTGGCACGGGAGGCGGAAGCGGCGAGCTGGAGCCAGAGGCGGCAGATGTACGGAGGAGGTGGGGGCGGAAAGAGAGAGATCAGCCCGTGGGGTGGAGCAGCGGTAGATGCCGCCCACGCCCCAACGGCTTCCGGCCGGATCGGACGGATACCCGAGCCCTCCCATCGGGCGGGGGTGACGCTCGCGGGCTGTCGAGTCGAACTCGAGGTGGGCTGCTTTGACGATGATTGCACGTGGCTGTTTCGTTGGTTGCCTTTCGAAGATGAGAAATAG

mRNA sequence

ATGCCCGAGCACCCAGCCTGCCGACCCAACCTACCGAATCACCACTCACGCGCCGTACGTCGAGCAACGGACCCGGGCGACACCCCACTATTCGCGCCCCTACGCCGAGCCGAGGCAGGGCGGGGGCGCGAAATCGTCGGGCAAAGCCGAGCCCGCAACGTCGTGCGCGGTCTCTCACTTCCTTCCTTCCTTCATTTTGTTGCAGGACACGAGCCCTTCCATCGAGTGGGGGAGCGAAGGCGGGCGATCTCGTCTCACTCAAAGCAAGCGTGCCGCTTTCCAGATATAGTTTCTCGTGTGATGGGTGTTGGGTGGGATGACAAGTGCAGCGATCGTTGCTTGAAGTACAGGTCGCATCGAAAACATTTGCTGGCACGGGAGGCGGAAGCGGCGAGCTGGAGCCAGAGGCGGCAGATGTACGGAGGAGGTGGGGGCGGAAAGAGAGAGATCAGCCCGTGGGGTGGAGCAGCGGTAGATGCCGCCCACGCCCCAACGGCTTCCGGCCGGATCGGACGGATACCCGAGCCCTCCCATCGGGCGGGGGTGACGCTCGCGGGCTGTCGAGTCGAACTCGAGGTGGGCTGCTTTGACGATGATTGCACGTGGCTGTTTCGTTGGTTGCCTTTCGAAGATGAGAAATAG

Coding sequence (CDS)

ATGCCCGAGCACCCAGCCTGCCGACCCAACCTACCGAATCACCACTCACGCGCCGTACGTCGAGCAACGGACCCGGGCGACACCCCACTATTCGCGCCCCTACGCCGAGCCGAGGCAGGGCGGGGGCGCGAAATCGTCGGGCAAAGCCGAGCCCGCAACGTCGTGCGCGGTCTCTCACTTCCTTCCTTCCTTCATTTTGTTGCAGGACACGAGCCCTTCCATCGAGTGGGGGAGCGAAGGCGGGCGATCTCGTCTCACTCAAAGCAAGCGTGCCGCTTTCCAGATATAGTTTCTCGTGTGATGGGTGTTGGGTGGGATGACAAGTGCAGCGATCGTTGCTTGAAGTACAGGTCGCATCGAAAACATTTGCTGGCACGGGAGGCGGAAGCGGCGAGCTGGAGCCAGAGGCGGCAGATGTACGGAGGAGGTGGGGGCGGAAAGAGAGAGATCAGCCCGTGGGGTGGAGCAGCGGTAGATGCCGCCCACGCCCCAACGGCTTCCGGCCGGATCGGACGGATACCCGAGCCCTCCCATCGGGCGGGGGTGACGCTCGCGGGCTGTCGAGTCGAACTCGAGGTGGGCTGCTTTGACGATGATTGCACGTGGCTGTTTCGTTGGTTGCCTTTCGAAGATGAGAAATAG

Protein sequence

MPEHPACRPNLPNHHSRAVRRATDPGDTPLFAPLRRAEAGRGREIVGQSRARNVVRGLSLPSFLHFVAGHEPFHRVGERRRAISSHSKQACRFPDIVSRVMGVGWDDKCSDRCLKYRSHRKHLLAREAEAASWSQRRQMYGGGGGGKREISPWGGAAVDAAHAPTASGRIGRIPEPSHRAGVTLAGCRVELEVGCFDDDCTWLFRWLPFEDEK

Homology

[Close]

BLAST of Moc04g25990 vs. NCBI nr
Match: XP_004138790.1 (transcription activator GLK1 [Cucumis sativus] >KGN63197.1 hypothetical protein Csa_022082 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-11
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMY----GGGGGGKREISPWG 155
           KYRSHRKHLLAREAEAASWSQRRQMY    GGGGGGKRE+SPWG
Sbjct: 221 KYRSHRKHLLAREAEAASWSQRRQMYGGGGGGGGGGKREVSPWG 264

[Close]

BLAST of Moc04g25990 vs. NCBI nr
Match: XP_038902675.1 (transcription activator GLK1 isoform X1 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMY---GGGGGGKREISPW 154
           KYRSHRKHLLAREAEAASWSQRRQMY   GGGGGGKRE+SPW
Sbjct: 217 KYRSHRKHLLAREAEAASWSQRRQMYGGGGGGGGGKREVSPW 258

[Close]

BLAST of Moc04g25990 vs. NCBI nr
Match: XP_038902676.1 (transcription activator GLK1 isoform X2 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-11
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMY---GGGGGGKREISPW 154
           KYRSHRKHLLAREAEAASWSQRRQMY   GGGGGGKRE+SPW
Sbjct: 217 KYRSHRKHLLAREAEAASWSQRRQMYGGGGGGGGGKREVSPW 258

[Close]

BLAST of Moc04g25990 vs. NCBI nr
Match: KAF3965019.1 (hypothetical protein CMV_010753 [Castanea mollissima])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-10
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMY----GGGGGGKREISPW 154
           KYRSHRKHLLAREAEAASWSQRRQMY    GGGGGGKRE+SPW
Sbjct: 190 KYRSHRKHLLAREAEAASWSQRRQMYGTASGGGGGGKREMSPW 232

[Close]

BLAST of Moc04g25990 vs. NCBI nr
Match: XP_008455954.1 (PREDICTED: transcription activator GLK1-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-10
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMY--GGGGGGKREISPWG 155
           KYRSHRKHLLAREAEAASWSQRRQMY  GGGGGGKRE+S WG
Sbjct: 221 KYRSHRKHLLAREAEAASWSQRRQMYGGGGGGGGKREVSSWG 262

[Close]

BLAST of Moc04g25990 vs. ExPASy Swiss-Prot
Match: Q5Z5I4 (Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLK1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-07
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMYGGGGG 146
           KYRSHRKH++AREAEAASW+QRRQ+Y  GGG
Sbjct: 230 KYRSHRKHMIAREAEAASWTQRRQIYAAGGG 260

[Close]

BLAST of Moc04g25990 vs. ExPASy Swiss-Prot
Match: Q5NAN5 (Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLK2 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 38/80 (47.50%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMYG--------GGGGGKREISPWGGAAVDAAHAPTA 174
           KYRSHRKHL+AREAEAASW+Q+RQMY           GGG R+      AA  AA AP  
Sbjct: 265 KYRSHRKHLMAREAEAASWTQKRQMYTAAAAAAAVAAGGGPRK----DAAAATAAVAPWV 324

Query: 175 SGRIG--------RIPEPSH 179
              IG         +P P H
Sbjct: 325 MPTIGFPPPHAAAMVPPPPH 340

[Close]

BLAST of Moc04g25990 vs. ExPASy Swiss-Prot
Match: Q9FFH0 (Transcription activator GLK2 OS=Arabidopsis thaliana OX=3702 GN=GLK2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-05
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQ----MYGGGGGGKREISPWGGAAV 159
           KYRSHRKHLLAREAEAASW+ RR     + G GGGGK+   PW   A+
Sbjct: 197 KYRSHRKHLLAREAEAASWNLRRHATVAVPGVGGGGKK---PWTAPAL 241

[Close]

BLAST of Moc04g25990 vs. ExPASy Swiss-Prot
Match: Q9SIV3 (Transcription activator GLK1 OS=Arabidopsis thaliana OX=3702 GN=GLK1 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 3.7e-05
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMYG 142
           KYRSHRKHLLAREAEAA+W+++R +YG
Sbjct: 203 KYRSHRKHLLAREAEAANWTRKRHIYG 229

[Close]

BLAST of Moc04g25990 vs. ExPASy TrEMBL
Match: A0A0A0LQW9 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G408430 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMY----GGGGGGKREISPWG 155
           KYRSHRKHLLAREAEAASWSQRRQMY    GGGGGGKRE+SPWG
Sbjct: 221 KYRSHRKHLLAREAEAASWSQRRQMYGGGGGGGGGGKREVSPWG 264

[Close]

BLAST of Moc04g25990 vs. ExPASy TrEMBL
Match: A0A1S3C1P2 (transcription activator GLK1-like OS=Cucumis melo OX=3656 GN=LOC103496016 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMY--GGGGGGKREISPWG 155
           KYRSHRKHLLAREAEAASWSQRRQMY  GGGGGGKRE+S WG
Sbjct: 221 KYRSHRKHLLAREAEAASWSQRRQMYGGGGGGGGKREVSSWG 262

[Close]

BLAST of Moc04g25990 vs. ExPASy TrEMBL
Match: A0A2N9GV03 (HTH myb-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31394 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMYG--GGGGGKREISPW 154
           KYRSHRKHLLAREAEAASWSQRRQMYG  GGGGGKR++SPW
Sbjct: 201 KYRSHRKHLLAREAEAASWSQRRQMYGAPGGGGGKRDMSPW 241

[Close]

BLAST of Moc04g25990 vs. ExPASy TrEMBL
Match: A0A1S4CE18 (transcription activator GLK1-like OS=Nicotiana tabacum OX=4097 GN=LOC107817975 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMYG----GGGGGKREISPW 154
           KYRSHRKHLLAREAEAASWSQRRQ+YG    GGGGGKREI+PW
Sbjct: 222 KYRSHRKHLLAREAEAASWSQRRQIYGGAAAGGGGGKREINPW 264

[Close]

BLAST of Moc04g25990 vs. ExPASy TrEMBL
Match: A0A2J6K5G3 (HTH myb-type domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_4X65921 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-10
Identity = 45/95 (47.37%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 94  PDIVSRVMGVG--WDDKCSDRCLKYRSHRKHLLAREAEAASWSQRRQMY-------GGGG 153
           P  +  +MG+G       +    KYRSHRKHLLAREAEAASWSQRRQMY       GGGG
Sbjct: 179 PSRILEIMGIGCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQMYGGTTAVGGGGG 238

Query: 154 GGKREISPWGGAAVDAAHAPTASGRIGRIPEPSHR 180
           G KR++ PW         AP   G     P P +R
Sbjct: 239 GSKRDMGPW--------VAPATMGFPPMTPLPHYR 265

[Close]

BLAST of Moc04g25990 vs. TAIR 10
Match: AT5G44190.1 (GOLDEN2-like 2 )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQ----MYGGGGGGKREISPWGGAAV 159
           KYRSHRKHLLAREAEAASW+ RR     + G GGGGK+   PW   A+
Sbjct: 197 KYRSHRKHLLAREAEAASWNLRRHATVAVPGVGGGGKK---PWTAPAL 241

[Close]

BLAST of Moc04g25990 vs. TAIR 10
Match: AT2G20570.1 (GBF's pro-rich region-interacting factor 1 )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMYG 142
           KYRSHRKHLLAREAEAA+W+++R +YG
Sbjct: 203 KYRSHRKHLLAREAEAANWTRKRHIYG 229

[Close]

BLAST of Moc04g25990 vs. TAIR 10
Match: AT2G20570.2 (GBF's pro-rich region-interacting factor 1 )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 115 KYRSHRKHLLAREAEAASWSQRRQMYG 142
           KYRSHRKHLLAREAEAA+W+++R +YG
Sbjct: 219 KYRSHRKHLLAREAEAANWTRKRHIYG 245

The following BLAST results are available for this feature:

BLAST of Moc04g25990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138790.1	4.3e-11	88.64	transcription activator GLK1 [Cucumis sativus] >KGN63197.1 hypothetical protein ...	[more]
XP_038902675.1	9.7e-11	90.48	transcription activator GLK1 isoform X1 [Benincasa hispida]	[more]
XP_038902676.1	9.7e-11	90.48	transcription activator GLK1 isoform X2 [Benincasa hispida]	[more]
KAF3965019.1	2.2e-10	88.37	hypothetical protein CMV_010753 [Castanea mollissima]	[more]
XP_008455954.1	2.2e-10	90.48	PREDICTED: transcription activator GLK1-like [Cucumis melo]	[more]

BLAST of Moc04g25990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5Z5I4	3.0e-07	80.65	Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica OX=39947 GN=G...	[more]
Q5NAN5	1.1e-06	47.50	Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica OX=39947 GN=G...	[more]
Q9FFH0	1.7e-05	62.50	Transcription activator GLK2 OS=Arabidopsis thaliana OX=3702 GN=GLK2 PE=1 SV=1	[more]
Q9SIV3	3.7e-05	77.78	Transcription activator GLK1 OS=Arabidopsis thaliana OX=3702 GN=GLK1 PE=1 SV=2	[more]

BLAST of Moc04g25990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQW9	2.1e-11	88.64	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G40843...	[more]
A0A1S3C1P2	1.0e-10	90.48	transcription activator GLK1-like OS=Cucumis melo OX=3656 GN=LOC103496016 PE=4 S...	[more]
A0A2N9GV03	1.4e-10	90.24	HTH myb-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3...	[more]
A0A1S4CE18	3.0e-10	86.05	transcription activator GLK1-like OS=Nicotiana tabacum OX=4097 GN=LOC107817975 P...	[more]
A0A2J6K5G3	4.0e-10	47.37	HTH myb-type domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_4X65921...	[more]

BLAST of Moc04g25990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44190.1	1.2e-06	62.50	GOLDEN2-like 2	[more]
AT2G20570.1	2.6e-06	77.78	GBF's pro-rich region-interacting factor 1	[more]
AT2G20570.2	2.6e-06	77.78	GBF's pro-rich region-interacting factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR31312:SF11	TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED	coord: 112..156
IPR044825	Transcription activator GLK1/2-like	PANTHER	PTHR31312	TRANSCRIPTION ACTIVATOR GLK1	coord: 112..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g25990.1	Moc04g25990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010597	green leaf volatile biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding