Moc04g25420 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g25420
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr4: 18460767 .. 18461470 (+)
RNA-Seq ExpressionMoc04g25420
SyntenyMoc04g25420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGCAGGCCGTTGAGAACATCAGAATGGCGTTATCAATGAATGTTTGTAGTCTGGCGGCGAAAGAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAGACAAGTATGAAAACCTTCTGCCAATACAAAAATACTTCTATGGACGAGGTATTTTAATATCCACATGGAGGAGGGAACCTCGGTGAATTCCCATATTAATGAACTCACTGATATCTTGAACAAGTTAGAAGGGATGAGTGTCAAGATTGACGAGGAGGTGAAAGCTATGAGGTTGTTGACATCTTTGCTTGACAGTTGGGAGACGATGAAGACCGCAGTGTCGAATTCACTAGAGGAAAATAGCTTGAAATTTATAGCTATTTGTGATGTTGCCTTATCTGAGGAATCCCGGAGAAAATTAGGGAAAATGTCTGCATCTACTTCAAGAGTAGAGAACGGGATTGAATCAACTTTGATAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAATGGGAAGCAACATAGATATAGCAGAGGTAGTGGGAGTTCCAGTAGAGAAGTAGAGTGTTATTACTGCCACAAGAAGGGACACATTAAACGTTTTTGCAGGAAGTTTAAAGAAGATCATGAGAAGGGGAACACTACTACAAATGTTGTAAGAGAAGAAGAACGAATTGAAGAGTTTCTGACTTGTGTTCAGAGGAACATATATTAG

mRNA sequence

ATGGATGAGCAGGCCGTTGAGAACATCAGAATGGCGTTATCAATGAATGTTTGTAGTCTGGCGGCGAAAGAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAGACAAGTATGAAAACCTTCTGCCAATACAAAAATACTTCTATGGACGAGAAGGGATGAGTGTCAAGATTGACGAGGAGGTGAAAGCTATGAGGTTGTTGACATCTTTGCTTGACAGTTGGGAGACGATGAAGACCGCAGTGTCGAATTCACTAGAGGAAAATAGCTTGAAATTTATAGCTATTTGTGATGTTGCCTTATCTGAGGAATCCCGGAGAAAATTAGGGAAAATGTCTGCATCTACTTCAAGAGTAGAGAACGGGATTGAATCAACTTTGATAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAATGGGAAGCAACATAGATATAGCAGAGGTAGTGGGAGTTCCAGTAGAGAAGTAGAGTGTTATTACTGCCACAAGAAGGGACACATTAAACGTTTTTGCAGGAAGTTTAAAGAAGATCATGAGAAGGGGAACACTACTACAAATGTTGTAAGAGAAGAAGAACGAATTGAAGAGTTTCTGACTTGTGTTCAGAGGAACATATATTAG

Coding sequence (CDS)

ATGGATGAGCAGGCCGTTGAGAACATCAGAATGGCGTTATCAATGAATGTTTGTAGTCTGGCGGCGAAAGAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAGACAAGTATGAAAACCTTCTGCCAATACAAAAATACTTCTATGGACGAGAAGGGATGAGTGTCAAGATTGACGAGGAGGTGAAAGCTATGAGGTTGTTGACATCTTTGCTTGACAGTTGGGAGACGATGAAGACCGCAGTGTCGAATTCACTAGAGGAAAATAGCTTGAAATTTATAGCTATTTGTGATGTTGCCTTATCTGAGGAATCCCGGAGAAAATTAGGGAAAATGTCTGCATCTACTTCAAGAGTAGAGAACGGGATTGAATCAACTTTGATAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAATGGGAAGCAACATAGATATAGCAGAGGTAGTGGGAGTTCCAGTAGAGAAGTAGAGTGTTATTACTGCCACAAGAAGGGACACATTAAACGTTTTTGCAGGAAGTTTAAAGAAGATCATGAGAAGGGGAACACTACTACAAATGTTGTAAGAGAAGAAGAACGAATTGAAGAGTTTCTGACTTGTGTTCAGAGGAACATATATTAG

Protein sequence

MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGREGMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKFIAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGSSSREVECYYCHKKGHIKRFCRKFKEDHEKGNTTTNVVREEERIEEFLTCVQRNIY
Homology
BLAST of Moc04g25420 vs. NCBI nr
Match: KAG6644691.1 (hypothetical protein CIPAW_08G070400 [Carya illinoinensis])

HSP 1 Score: 94.7 bits (234), Expect = 9.7e-16
Identity = 69/202 (34.16%), Postives = 103/202 (50.99%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYE-------NLLPIQKYFYGREG 60
           +D Q +  IR+ LS +V     KE T  DL+KAL D YE       +L            
Sbjct: 55  LDRQVLRVIRLTLSRSVAHNVGKEKTTADLMKALSDMYEQPSANNKHLNEFNTIINQLAS 114

Query: 61  MSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKFIAICDVALSEESRRK-LGKM 120
           + ++ D+EV+A+  L  L  SWE M+T VSNS  +  +K+  I D  LSEE RR+  G+ 
Sbjct: 115 VGIEFDDEVRALIALAQLPKSWEAMRTTVSNSYGKTKMKYQDIRDHILSEEVRRRDTGEA 174

Query: 121 SASTSRVENGIESTLIAQNKGKAKMSYNGK-QHRYSRGSGSSSREVECYYCHKKGHIKRF 180
           S S+S +       L  + +G ++ S  G+ + R  R    S ++V+C+ C K GH K  
Sbjct: 175 STSSSAL------NLETRGRGASRSSNRGRSKSRRGRSKSRSGKQVQCWNCGKIGHFKNN 234

Query: 181 C--RKFKEDHEKGNTTTNVVRE 192
           C   K K +H+  N TT  +R+
Sbjct: 235 CMEAKKKNEHDSVNATTEELRD 250

BLAST of Moc04g25420 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-14
Identity = 77/222 (34.68%), Postives = 107/222 (48.20%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
           +D Q +  IR+ LS NV    AKE T + L+K L D YE      K F  ++        
Sbjct: 54  LDRQVLGVIRLTLSKNVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEE 113

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               + ++ D+EV+A+ LL SL +SWE M+ AVSNS+    LKF
Sbjct: 114 GGPVATHVNEFNTIVNQLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKF 173

Query: 121 IAICDVALSEESRR-KLGKMSASTS-RVEN-GIESTLIAQNKGKAKMSYNGKQHRYSRGS 180
           + + D  L EE RR   G+ S S++  VEN G +     QN+G++K S NGK      G 
Sbjct: 174 VDVRDRILGEEVRRIDTGETSMSSAFNVENRGRDQNRRNQNRGRSK-SRNGK------GQ 233

Query: 181 GSSSREVECYYCHKKGHIKRFC-RKFKEDHEKGNTTTNVVRE 192
             S + VEC+ C K GH K  C    K+++ KG     V  E
Sbjct: 234 SKSRKPVECWNCGKTGHFKSNCWAPPKKENNKGGGANAVTDE 268

BLAST of Moc04g25420 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-14
Identity = 76/222 (34.23%), Postives = 107/222 (48.20%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
           +D Q +  IR+ LS NV    AKE T + L+K L D YE      K F  ++        
Sbjct: 54  LDRQVLGVIRLTLSKNVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEE 113

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               + ++ D+EV+A+ L+ SL +SWE M+ AVSNS+    LKF
Sbjct: 114 GGPVATHVNEFNTIVNQLSSVEIEFDDEVRALILIASLPNSWEPMRAAVSNSVGNQKLKF 173

Query: 121 IAICDVALSEESRR-KLGKMSASTS-RVEN-GIESTLIAQNKGKAKMSYNGKQHRYSRGS 180
           + + D  L EE RR   G+ S S++  VEN G +     QN+G++K S NGK      G 
Sbjct: 174 VDVRDRILGEEVRRIDTGETSTSSAFNVENRGRDQNRRNQNRGRSK-SRNGK------GQ 233

Query: 181 GSSSREVECYYCHKKGHIKRFC-RKFKEDHEKGNTTTNVVRE 192
             S + VEC+ C K GH K  C    K+++ KG     V  E
Sbjct: 234 SKSRKPVECWNCGKTGHFKSNCWAPPKKENNKGGGANAVTDE 268

BLAST of Moc04g25420 vs. NCBI nr
Match: RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
           +D +AV  IR  +  +V    + E +A  L   L+  Y+    + K F  R+        
Sbjct: 32  LDRKAVGFIRQWIGDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 91

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               M +  D+E++A+ LL+SL +SWET+   VSNS  +  +  
Sbjct: 92  GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 151

Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
             +    L+EE+RRK    S+ +S  E      L+ +N+G    K+K S+N  + R  R 
Sbjct: 152 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 211

Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
           S  S ++VECYYCHKKGH+KR CR  KFKE +++ N+
Sbjct: 212 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 238

BLAST of Moc04g25420 vs. NCBI nr
Match: RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
           +D +AV  IR  +  +V    + E +A  L   L+  Y+    + K F  R+        
Sbjct: 268 LDRKAVGFIRQWIDDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 327

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               M +  D+E++A+ LL+SL +SWET+   VSNS  +  +  
Sbjct: 328 GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 387

Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
             +    L+EE+RRK    S+ +S  E      L+ +N+G    K+K S+N  + R  R 
Sbjct: 388 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 447

Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
           S  S ++VECYYCHKKGH+KR CR  KFKE +++ N+
Sbjct: 448 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 474

BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match: A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
           +D +AV  IR  +  +V    + E +A  L   L+  Y+    + K F  R+        
Sbjct: 268 LDRKAVGFIRQWIDDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 327

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               M +  D+E++A+ LL+SL +SWET+   VSNS  +  +  
Sbjct: 328 GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 387

Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
             +    L+EE+RRK    S+ +S  E      L+ +N+G    K+K S+N  + R  R 
Sbjct: 388 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 447

Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
           S  S ++VECYYCHKKGH+KR CR  KFKE +++ N+
Sbjct: 448 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 474

BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match: A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
           +D +AV  IR  +  +V    + E +A  L   L+  Y+    + K F  R+        
Sbjct: 32  LDRKAVGFIRQWIGDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 91

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               M +  D+E++A+ LL+SL +SWET+   VSNS  +  +  
Sbjct: 92  GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 151

Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
             +    L+EE+RRK    S+ +S  E      L+ +N+G    K+K S+N  + R  R 
Sbjct: 152 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 211

Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
           S  S ++VECYYCHKKGH+KR CR  KFKE +++ N+
Sbjct: 212 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 238

BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match: A0A6A2XFF2 (CC-NBS-LRR class disease resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111754pilonHSYRG00077 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 69/192 (35.94%), Postives = 104/192 (54.17%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQ--DKYENLLPIQKYFYGREGMSVKI 60
           +D QA+  IR+ LS NV    AKE T   L+ AL      ++L  +         + ++ 
Sbjct: 408 LDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSRASVAQHLNELNTITTQLSSVEIEF 467

Query: 61  DEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKFIAICDVALSEE-SRRKLGKMSASTS 120
           D+EV+A+ +L+SL D+W    TAVS+S   + LKF  + D+ LSEE  RR+ G+ S S+S
Sbjct: 468 DDEVRALIILSSLPDNWNATVTAVSSSSRNSKLKFDDVRDLVLSEEIRRRESGEASTSSS 527

Query: 121 -RVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGSSSREVECYYCHKKGHIKRFCRKFK 180
             +E+   ++    N+G++K S  GK       S +  ++  CY C KKGH KR C+  K
Sbjct: 528 LHIESRGRTSERNSNRGRSK-SKRGK-------SRTGKKDFTCYNCGKKGHFKRDCQALK 587

Query: 181 ED---HEKGNTT 186
           +D   HE  N T
Sbjct: 588 KDTCAHESANMT 591

BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match: A0A438CRS1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4222 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 69/220 (31.36%), Postives = 109/220 (49.55%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYE-----NLLPIQKYFYGRE--- 60
           +D Q +  IR+ LS +V     KE T  DL+KAL   YE     N + + K  +  +   
Sbjct: 55  LDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAE 114

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               + +  D+E++A+ +L SL +SWE M+ AVSNS+ +  LK+
Sbjct: 115 NASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSIGKEKLKY 174

Query: 121 IAICDVALSEESRRK-LGKMSASTSRVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGS 180
             I D+ L+EE RR+  G+ S S S +   +E+     NK   +   N +    +R    
Sbjct: 175 NDIRDLILAEEIRRRDAGETSGSGSAL--NLETRGRGNNKNSNQGRSNSRNSNRNRSKSR 234

Query: 181 SSREVECYYCHKKGHIKRFCRKFKEDHEKGNTTTNVVREE 193
           SS++V+C+ C K GH KR C+  K+ +E  + + N V EE
Sbjct: 235 SSQQVQCWNCGKTGHFKRQCKSPKKKNE--DDSANAVTEE 270

BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match: A5BFU1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_022356 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 68/220 (30.91%), Postives = 109/220 (49.55%), Query Frame = 0

Query: 1   MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYE-----NLLPIQKYFYGRE--- 60
           +D Q +  IR+ LS +V     KE T  DL+KAL   YE     N + + K  +  +   
Sbjct: 55  LDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSSMYEKPSANNKVHLMKKLFNLKMAE 114

Query: 61  -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
                               + +  D+E+ A+ +L SLL+SWE M+ AVSNS  +  LK+
Sbjct: 115 NASVAQHLNEFNTITNQLSSIEINFDDEICALIVLASLLNSWEAMRMAVSNSTGKEKLKY 174

Query: 121 IAICDVALSEESRRK-LGKMSASTSRVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGS 180
             I D+ L+EE RR+  G+ S S+S +   +E+     N+   +   N +    +R    
Sbjct: 175 NDIRDLILAEEIRRRDAGETSGSSSAL--NLETRGKGNNRNSNQGRSNSRNSNRNRSKSR 234

Query: 181 SSREVECYYCHKKGHIKRFCRKFKEDHEKGNTTTNVVREE 193
           S ++V+C+ C K GH KR C+  K+ ++  + +TN V EE
Sbjct: 235 SGQQVQCWNCGKTGHFKRQCKNPKKKND--DDSTNAVTEE 270

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6644691.19.7e-1634.16hypothetical protein CIPAW_08G070400 [Carya illinoinensis][more]
KAG7584790.11.8e-1434.68Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7561662.12.4e-1434.23Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
RVW84195.13.1e-1432.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW14266.13.1e-1432.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438BTH61.5e-1432.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438HI911.5e-1432.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A6A2XFF22.0e-1435.94CC-NBS-LRR class disease resistance protein OS=Hibiscus syriacus OX=106335 GN=F3... [more]
A0A438CRS12.0e-1431.36Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5BFU12.6e-1430.91Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_022356 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 130..189
e-value: 7.0E-7
score: 31.0
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 159..174
score: 8.696716
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 137..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g25420.1Moc04g25420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding