Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGCAGGCCGTTGAGAACATCAGAATGGCGTTATCAATGAATGTTTGTAGTCTGGCGGCGAAAGAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAGACAAGTATGAAAACCTTCTGCCAATACAAAAATACTTCTATGGACGAGGTATTTTAATATCCACATGGAGGAGGGAACCTCGGTGAATTCCCATATTAATGAACTCACTGATATCTTGAACAAGTTAGAAGGGATGAGTGTCAAGATTGACGAGGAGGTGAAAGCTATGAGGTTGTTGACATCTTTGCTTGACAGTTGGGAGACGATGAAGACCGCAGTGTCGAATTCACTAGAGGAAAATAGCTTGAAATTTATAGCTATTTGTGATGTTGCCTTATCTGAGGAATCCCGGAGAAAATTAGGGAAAATGTCTGCATCTACTTCAAGAGTAGAGAACGGGATTGAATCAACTTTGATAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAATGGGAAGCAACATAGATATAGCAGAGGTAGTGGGAGTTCCAGTAGAGAAGTAGAGTGTTATTACTGCCACAAGAAGGGACACATTAAACGTTTTTGCAGGAAGTTTAAAGAAGATCATGAGAAGGGGAACACTACTACAAATGTTGTAAGAGAAGAAGAACGAATTGAAGAGTTTCTGACTTGTGTTCAGAGGAACATATATTAG
mRNA sequence
ATGGATGAGCAGGCCGTTGAGAACATCAGAATGGCGTTATCAATGAATGTTTGTAGTCTGGCGGCGAAAGAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAGACAAGTATGAAAACCTTCTGCCAATACAAAAATACTTCTATGGACGAGAAGGGATGAGTGTCAAGATTGACGAGGAGGTGAAAGCTATGAGGTTGTTGACATCTTTGCTTGACAGTTGGGAGACGATGAAGACCGCAGTGTCGAATTCACTAGAGGAAAATAGCTTGAAATTTATAGCTATTTGTGATGTTGCCTTATCTGAGGAATCCCGGAGAAAATTAGGGAAAATGTCTGCATCTACTTCAAGAGTAGAGAACGGGATTGAATCAACTTTGATAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAATGGGAAGCAACATAGATATAGCAGAGGTAGTGGGAGTTCCAGTAGAGAAGTAGAGTGTTATTACTGCCACAAGAAGGGACACATTAAACGTTTTTGCAGGAAGTTTAAAGAAGATCATGAGAAGGGGAACACTACTACAAATGTTGTAAGAGAAGAAGAACGAATTGAAGAGTTTCTGACTTGTGTTCAGAGGAACATATATTAG
Coding sequence (CDS)
ATGGATGAGCAGGCCGTTGAGAACATCAGAATGGCGTTATCAATGAATGTTTGTAGTCTGGCGGCGAAAGAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAGACAAGTATGAAAACCTTCTGCCAATACAAAAATACTTCTATGGACGAGAAGGGATGAGTGTCAAGATTGACGAGGAGGTGAAAGCTATGAGGTTGTTGACATCTTTGCTTGACAGTTGGGAGACGATGAAGACCGCAGTGTCGAATTCACTAGAGGAAAATAGCTTGAAATTTATAGCTATTTGTGATGTTGCCTTATCTGAGGAATCCCGGAGAAAATTAGGGAAAATGTCTGCATCTACTTCAAGAGTAGAGAACGGGATTGAATCAACTTTGATAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAATGGGAAGCAACATAGATATAGCAGAGGTAGTGGGAGTTCCAGTAGAGAAGTAGAGTGTTATTACTGCCACAAGAAGGGACACATTAAACGTTTTTGCAGGAAGTTTAAAGAAGATCATGAGAAGGGGAACACTACTACAAATGTTGTAAGAGAAGAAGAACGAATTGAAGAGTTTCTGACTTGTGTTCAGAGGAACATATATTAG
Protein sequence
MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGREGMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKFIAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGSSSREVECYYCHKKGHIKRFCRKFKEDHEKGNTTTNVVREEERIEEFLTCVQRNIY
Homology
BLAST of Moc04g25420 vs. NCBI nr
Match:
KAG6644691.1 (hypothetical protein CIPAW_08G070400 [Carya illinoinensis])
HSP 1 Score: 94.7 bits (234), Expect = 9.7e-16
Identity = 69/202 (34.16%), Postives = 103/202 (50.99%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYE-------NLLPIQKYFYGREG 60
+D Q + IR+ LS +V KE T DL+KAL D YE +L
Sbjct: 55 LDRQVLRVIRLTLSRSVAHNVGKEKTTADLMKALSDMYEQPSANNKHLNEFNTIINQLAS 114
Query: 61 MSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKFIAICDVALSEESRRK-LGKM 120
+ ++ D+EV+A+ L L SWE M+T VSNS + +K+ I D LSEE RR+ G+
Sbjct: 115 VGIEFDDEVRALIALAQLPKSWEAMRTTVSNSYGKTKMKYQDIRDHILSEEVRRRDTGEA 174
Query: 121 SASTSRVENGIESTLIAQNKGKAKMSYNGK-QHRYSRGSGSSSREVECYYCHKKGHIKRF 180
S S+S + L + +G ++ S G+ + R R S ++V+C+ C K GH K
Sbjct: 175 STSSSAL------NLETRGRGASRSSNRGRSKSRRGRSKSRSGKQVQCWNCGKIGHFKNN 234
Query: 181 C--RKFKEDHEKGNTTTNVVRE 192
C K K +H+ N TT +R+
Sbjct: 235 CMEAKKKNEHDSVNATTEELRD 250
BLAST of Moc04g25420 vs. NCBI nr
Match:
KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 90.5 bits (223), Expect = 1.8e-14
Identity = 77/222 (34.68%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
+D Q + IR+ LS NV AKE T + L+K L D YE K F ++
Sbjct: 54 LDRQVLGVIRLTLSKNVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEE 113
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
+ ++ D+EV+A+ LL SL +SWE M+ AVSNS+ LKF
Sbjct: 114 GGPVATHVNEFNTIVNQLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKF 173
Query: 121 IAICDVALSEESRR-KLGKMSASTS-RVEN-GIESTLIAQNKGKAKMSYNGKQHRYSRGS 180
+ + D L EE RR G+ S S++ VEN G + QN+G++K S NGK G
Sbjct: 174 VDVRDRILGEEVRRIDTGETSMSSAFNVENRGRDQNRRNQNRGRSK-SRNGK------GQ 233
Query: 181 GSSSREVECYYCHKKGHIKRFC-RKFKEDHEKGNTTTNVVRE 192
S + VEC+ C K GH K C K+++ KG V E
Sbjct: 234 SKSRKPVECWNCGKTGHFKSNCWAPPKKENNKGGGANAVTDE 268
BLAST of Moc04g25420 vs. NCBI nr
Match:
KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 90.1 bits (222), Expect = 2.4e-14
Identity = 76/222 (34.23%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
+D Q + IR+ LS NV AKE T + L+K L D YE K F ++
Sbjct: 54 LDRQVLGVIRLTLSKNVAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEE 113
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
+ ++ D+EV+A+ L+ SL +SWE M+ AVSNS+ LKF
Sbjct: 114 GGPVATHVNEFNTIVNQLSSVEIEFDDEVRALILIASLPNSWEPMRAAVSNSVGNQKLKF 173
Query: 121 IAICDVALSEESRR-KLGKMSASTS-RVEN-GIESTLIAQNKGKAKMSYNGKQHRYSRGS 180
+ + D L EE RR G+ S S++ VEN G + QN+G++K S NGK G
Sbjct: 174 VDVRDRILGEEVRRIDTGETSTSSAFNVENRGRDQNRRNQNRGRSK-SRNGK------GQ 233
Query: 181 GSSSREVECYYCHKKGHIKRFC-RKFKEDHEKGNTTTNVVRE 192
S + VEC+ C K GH K C K+++ KG V E
Sbjct: 234 SKSRKPVECWNCGKTGHFKSNCWAPPKKENNKGGGANAVTDE 268
BLAST of Moc04g25420 vs. NCBI nr
Match:
RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 89.7 bits (221), Expect = 3.1e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
+D +AV IR + +V + E +A L L+ Y+ + K F R+
Sbjct: 32 LDRKAVGFIRQWIGDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 91
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
M + D+E++A+ LL+SL +SWET+ VSNS + +
Sbjct: 92 GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 151
Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
+ L+EE+RRK S+ +S E L+ +N+G K+K S+N + R R
Sbjct: 152 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 211
Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
S S ++VECYYCHKKGH+KR CR KFKE +++ N+
Sbjct: 212 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 238
BLAST of Moc04g25420 vs. NCBI nr
Match:
RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 89.7 bits (221), Expect = 3.1e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
+D +AV IR + +V + E +A L L+ Y+ + K F R+
Sbjct: 268 LDRKAVGFIRQWIDDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 327
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
M + D+E++A+ LL+SL +SWET+ VSNS + +
Sbjct: 328 GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 387
Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
+ L+EE+RRK S+ +S E L+ +N+G K+K S+N + R R
Sbjct: 388 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 447
Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
S S ++VECYYCHKKGH+KR CR KFKE +++ N+
Sbjct: 448 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 474
BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match:
A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
+D +AV IR + +V + E +A L L+ Y+ + K F R+
Sbjct: 268 LDRKAVGFIRQWIDDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 327
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
M + D+E++A+ LL+SL +SWET+ VSNS + +
Sbjct: 328 GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 387
Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
+ L+EE+RRK S+ +S E L+ +N+G K+K S+N + R R
Sbjct: 388 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 447
Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
S S ++VECYYCHKKGH+KR CR KFKE +++ N+
Sbjct: 448 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 474
BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match:
A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 70/217 (32.26%), Postives = 108/217 (49.77%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYENLLPIQKYFYGRE-------- 60
+D +AV IR + +V + E +A L L+ Y+ + K F R+
Sbjct: 32 LDRKAVGFIRQWIGDSVFHHVSTENSAHGLWTKLESLYDRKTAVNKAFLFRKLVNSKYKE 91
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
M + D+E++A+ LL+SL +SWET+ VSNS + +
Sbjct: 92 GTPIAEHLNEIKSIVNQLAAMKITFDDELQALLLLSSLPESWETLVVTVSNSTPDGVVTM 151
Query: 121 IAICDVALSEESRRKLGKMSASTSRVENGIESTLIAQNKG----KAKMSYNGKQHRYSRG 180
+ L+EE+RRK S+ +S E L+ +N+G K+K S+N + R R
Sbjct: 152 SQVTSSLLNEETRRK----SSGSSHSE-----ALVIENRGRGRSKSKASHNRDKSR-GRS 211
Query: 181 SGSSSREVECYYCHKKGHIKRFCR--KFKEDHEKGNT 185
S S ++VECYYCHKKGH+KR CR KFKE +++ N+
Sbjct: 212 SSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNS 238
BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match:
A0A6A2XFF2 (CC-NBS-LRR class disease resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111754pilonHSYRG00077 PE=4 SV=1)
HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 69/192 (35.94%), Postives = 104/192 (54.17%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQ--DKYENLLPIQKYFYGREGMSVKI 60
+D QA+ IR+ LS NV AKE T L+ AL ++L + + ++
Sbjct: 408 LDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSRASVAQHLNELNTITTQLSSVEIEF 467
Query: 61 DEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKFIAICDVALSEE-SRRKLGKMSASTS 120
D+EV+A+ +L+SL D+W TAVS+S + LKF + D+ LSEE RR+ G+ S S+S
Sbjct: 468 DDEVRALIILSSLPDNWNATVTAVSSSSRNSKLKFDDVRDLVLSEEIRRRESGEASTSSS 527
Query: 121 -RVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGSSSREVECYYCHKKGHIKRFCRKFK 180
+E+ ++ N+G++K S GK S + ++ CY C KKGH KR C+ K
Sbjct: 528 LHIESRGRTSERNSNRGRSK-SKRGK-------SRTGKKDFTCYNCGKKGHFKRDCQALK 587
Query: 181 ED---HEKGNTT 186
+D HE N T
Sbjct: 588 KDTCAHESANMT 591
BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match:
A0A438CRS1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4222 PE=4 SV=1)
HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 69/220 (31.36%), Postives = 109/220 (49.55%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYE-----NLLPIQKYFYGRE--- 60
+D Q + IR+ LS +V KE T DL+KAL YE N + + K + +
Sbjct: 55 LDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAE 114
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
+ + D+E++A+ +L SL +SWE M+ AVSNS+ + LK+
Sbjct: 115 NASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSIGKEKLKY 174
Query: 121 IAICDVALSEESRRK-LGKMSASTSRVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGS 180
I D+ L+EE RR+ G+ S S S + +E+ NK + N + +R
Sbjct: 175 NDIRDLILAEEIRRRDAGETSGSGSAL--NLETRGRGNNKNSNQGRSNSRNSNRNRSKSR 234
Query: 181 SSREVECYYCHKKGHIKRFCRKFKEDHEKGNTTTNVVREE 193
SS++V+C+ C K GH KR C+ K+ +E + + N V EE
Sbjct: 235 SSQQVQCWNCGKTGHFKRQCKSPKKKNE--DDSANAVTEE 270
BLAST of Moc04g25420 vs. ExPASy TrEMBL
Match:
A5BFU1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_022356 PE=4 SV=1)
HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 68/220 (30.91%), Postives = 109/220 (49.55%), Query Frame = 0
Query: 1 MDEQAVENIRMALSMNVCSLAAKETTAKDLLKALQDKYE-----NLLPIQKYFYGRE--- 60
+D Q + IR+ LS +V KE T DL+KAL YE N + + K + +
Sbjct: 55 LDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSSMYEKPSANNKVHLMKKLFNLKMAE 114
Query: 61 -------------------GMSVKIDEEVKAMRLLTSLLDSWETMKTAVSNSLEENSLKF 120
+ + D+E+ A+ +L SLL+SWE M+ AVSNS + LK+
Sbjct: 115 NASVAQHLNEFNTITNQLSSIEINFDDEICALIVLASLLNSWEAMRMAVSNSTGKEKLKY 174
Query: 121 IAICDVALSEESRRK-LGKMSASTSRVENGIESTLIAQNKGKAKMSYNGKQHRYSRGSGS 180
I D+ L+EE RR+ G+ S S+S + +E+ N+ + N + +R
Sbjct: 175 NDIRDLILAEEIRRRDAGETSGSSSAL--NLETRGKGNNRNSNQGRSNSRNSNRNRSKSR 234
Query: 181 SSREVECYYCHKKGHIKRFCRKFKEDHEKGNTTTNVVREE 193
S ++V+C+ C K GH KR C+ K+ ++ + +TN V EE
Sbjct: 235 SGQQVQCWNCGKTGHFKRQCKNPKKKND--DDSTNAVTEE 270
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6644691.1 | 9.7e-16 | 34.16 | hypothetical protein CIPAW_08G070400 [Carya illinoinensis] | [more] |
KAG7584790.1 | 1.8e-14 | 34.68 | Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
KAG7561662.1 | 2.4e-14 | 34.23 | Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
RVW84195.1 | 3.1e-14 | 32.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW14266.1 | 3.1e-14 | 32.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A438BTH6 | 1.5e-14 | 32.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438HI91 | 1.5e-14 | 32.26 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A6A2XFF2 | 2.0e-14 | 35.94 | CC-NBS-LRR class disease resistance protein OS=Hibiscus syriacus OX=106335 GN=F3... | [more] |
A0A438CRS1 | 2.0e-14 | 31.36 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A5BFU1 | 2.6e-14 | 30.91 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_022356 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |