Moc04g25280 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g25280
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	rho GDP-dissociation inhibitor 1-like
Location	chr4: 18363074 .. 18367975 (+)
RNA-Seq Expression	Moc04g25280
Synteny	Moc04g25280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCGTTGGAACTCAAAGTGTTTCTTTTGCGGTAATACATATAGATATTCTTTATGTTTAGCACAATTAATAGTGATGATATGCATATTAATATGTTATCTTCAGGTGCGTGCCGATCAACCTCTTATTGATGAAATAACAGAAGAAGTAATAATGGATAATGTGGAGGATCGAAGAGGGAAAAGGAAAGAGATAGAGGAATTTGAGGTATATATTCCTTATATTTATCACAATTAATAACCATTATGTGCATATTAATATGTTATCTTCAGGTGTCTGCCGATCAACCTCATATTGAAGAAATAACAGAAGAAGAAGTAATACTCGATAGTGTGGATCGAAGAGGGAAAAGGAAAGAGAGAGAGGAATCTGAGGTATTAAAACCTTATTATTAGTATAATTTCTTTAACTAGTAGTATAATTTGAATTTAGAATAATGCAGGATAATGATATCCCAATAATTGAAATGAATTTAGAATCATGCAGGATAATGATATCCCAATAATTGAAAGGTTGAAAAAATTAAAAAACGGTGTGCCAAGATGATTTAAAGGGAAGAAGAAACAAGATGATATGACGACCAAAAAGGTGATGATGGTAATTCCTTTTTTTCTTTTGGTAGAAGTATATTTTTAAGTGAAATTGATTATCTTAATCTTTATTGAATTACAGAATGTTAAAAACCCAAGACGCAAAGATAGGAGGAAAAAAAGGAAATATGATAAAAGCAATTTTATTGGTCAGAACCGGACAGATGTGTATGGGGTATGTATTATATATCCATGTATTATATTGTTATTTTTCAATATATCATGTGCATATAATTACATTTAGGCTTATATGATGTTCAAGAGGCTCCACTGTTACTTCCGAGAGATAAGTGGTTAAATAGAACCAAACTTCAAATATATTCAAAATTAGAAGTGTTGGAGAATATTAAGGACGTACTTTCAAAAAAACAACTAAGAAAATTTAGAAATACATGTTTTGGAAGCTTCTTAGATGTAAAGATTAAAAAATATCCACTCCAACTAATTAGCCACATAATTAGGAGACAATGTAGCCCTTGCCCAGGAGATTAAATTAATTTCAAGTTTGAGAGCAAAGTGGTTCATTTTGGATTACAAGAGTTTAAGGCTATTACTGGACTTAAATGCGAGGAACTACCTTCTGTGGACTTCAAAAAATTGAGTGGGAGATTATTGACTAAATATTTCAACAATTCAACAATTCCTGTGTGTCGCAACGTCATCGCGACGCAGAGCGGCTGACGTCATCCCCTGATGGGTCTCTTTCGAGATTAGGGTTTGGAGTTGCCACCAATCATCTACGAGGTGTGATTGGTCACCTATTTAAAAAAACTTGGTCTACGAAAATAGAATTTTGGTTCGGGAGTCGGTTGAGCGTAGGGAAGGTGTTAACACCCTACGACACCCGTTGGAAAACGGTACCATATTTTGTCAAAAATTATCCTATTATACTTTGATCCAAAAAGAAAAATACTTTTGTGTTTGATTTTAAATGTCTCAAATATATTGGTTCATATTTTACGATAAAATATGAACCAACAAGCATGAGTGGCGCAAAGACCATTAGAAAAACAAATTATCACCTTGAGAATATTGGAAAGATCTAATTTCTGTCATTGGGATTTTTGAAATAATTATTTAGTAGAAAAGAGAAATTAATAAATAAAAAAAAATTTAGCCTAGGGGCCATCAATACTTGAACTTGTGATGTGAGAATTCATGTACAAATTTCTTACCAATGTGCCAACATCCTAAGATATTACTTAAAATTTTATGTAAATGTTTTAAGATTTGAAATCTTATAAAAACGAAAGTTTTCTTTTTTATATTAAAAAAAACATTTTATCTAAAATAGTTGTTTGGTAAATAATGATATATAAAAAAAACATTAATTTAGGCAAGCAAAGACTCCAACCTAAAACATGTGAATTACTCCTAAGTAACCTACTACTATGCCAACATCATATGATACAACTTAGTATTAATTTTTATCATACAAATCTTTATTTTAAAAAAATGTTTTAAAAAAATAAAAATAAAACAAATAAAACTAAAACGAAAAAAAATAATAATAAAATAAAAAATAAATATTTAAAACTTATTTTAAAAATAATCAAATCATATTTAAACAATTTTATTTTAAAATATATCAAATCATACTTAAACAAATTTATTTTAAAATAATCAAATCATATTTAAACAAATTTATTTTAAAATATATCAAATCATATTTAAACAAATTTATTTTAAAATATATCAAACCATATTTAAACAAATTTAATATATCAAATCATATTTAAACAAATTTATTTTAACAAATTTATTTTAAAATATATATAATCATATTTAAACAAATTTATTTTAAAATATATCAAATCATATTTAAAAAAAATTTATTTTAAAATATATATATATATATATATCAAATTTAAAACAAGCTTATTTAAAACAAATAAAAAAAACCAAATCATTTCTAAAACAACTTTTTCTATACCACCTACTGCAGTGAGGAAATTCTAGGTGTGCCCGCGGGTCTGAAAACTGTGAAGGAGCACTCGAGGTCGAAGTCAGGTGGTCGGTGATCCGTGCGTCGGTTGTAGAAGTTTTGCGCCGGAGTACTATGGTGCAGGTTGTCTGAACTTGTGATCACCGGGGGACGTGTGCGGTCTGTGTATCGTCGGGGTCACCGGCCTGGGTGAAGAAGAAGAGAAGGTGATGGTAGAGAGAAAGAAGGAAGTGAATTCTTCTGTATGGGTGTTCTGTCCGTCCTCTCCTCCCCACTGCAGCTCTCCTTAAATACAGCTAAAAACTAACGATAAAAAAGAAAAAGGGGGAAAGAAGAGAGAAAAAGAGGGAGGAGAAGAAGGGGAGGGGATACAAGTATGAAGGAAAAAATCAAAGGGGAGAAAAACAGTTTTTTTTTTTTATCTTAAAATCAATTTAAAAAAAAAAACCAATTATTTTCAAATAAAAACTAATTTTAAAACTTAATTTGATTCAATTAAAACTTTATATTAAATTTTATAATAAAGTAAATTATGTTATTTTAAACTAAATTTTATAATCATTAAAAAATAATTAAAAAAAAAGCAACGGACCTAACTTGACACAGGCTTCGACCACGATCTATCGGGTTCGATTTAACCAACAGAAAACTAAAAGGTAACGGACCTGGCTTGACACAAGCTTCGACCACGATCTATCGGGTTCGATTTAACCAACAGAAAACTAAAAGGAAACAGACCTGGCTTGACACAGGCTTCGACCACGATCTTTGATCGGGTTCGATTTAACCAACAGAAAACTAAAAGGCAACGGATCTGGCTTGACACAGGCTTCGACCACGATCAATCGGGTTCGATTTAACCACCAAAAAACTAAAAGGAAACAGACCTGGCTTGACACAGGCTTCGACCACGATCTTTGATCGGGTTCGATTTAACCAACAGAAAACTAAAAGGCAACGGACCTGGCTTGACACAAGCTTCGACCACGATATATCGGGTTCGATTTAACCAACAAAAAACTAAAAAGAAACGGACCTGACTTGACACAGGCTTCGACCACGATCTTTGATCGGATTCTATTTAACCAACAGAAAACTAAAAGGCAACGGACCTGGCTTGACACAGGTTTCGACCACGATCTATCGGGTTCGATTTAACCAACAGAAAACTAAAAAGTGATGAACCTGGCTTGACTCAGGCTTCGACCACGATATATCGGGTTCGATATAACCAACAAAAAATTAAAAGGAAACGGACCTGGCTTGACACAAGCTTTGACCACGATCTTTGATCGGGTTCCAACATAAAACTAAAAGGCAACGGACTTGGCTTGACACAGGCTTCGACCACCATCTATCGGGTTCGATTTAACCAACAAAAAATTAAAAGGAAACGGACATGGCTTGACACAGGCTTCGACCACGATCTTTGATCAAGTTCGATTTAACCAACATAAAACTAAACAAGCTTCCTAATTCCCTCATCCTTTCCTCTGCCTTTCTCCATTCTTCATTTCCTTATATCCCCTTTCTGCCATTTCTTTCACCAATTTTTTTTTGTTTTCTTTTCTAGTTGGGTTGGGTTCTCTTCCATTTTGTTGGTTTCTTTTGCCTGGACCTCATTGCTCCTACCTCTATATCTTTTGACTCCAATTCTCTCCCATTTCCCACCCAATTCTGTCTCTCTCTGTAGCTCTTTCGACCCACTTTTTTCCTTTGTCTGTAGGTGGGCAAAGTCTGTTTCTTTTGTCTGCCATTAGGGGGTCTGATTCTGTATTTTTCTTTGGTGGGGTGGATGGTCTTTTGAGGAAATGGGTCTGGAAGAAGGAAATGGTTCTCCTGAGAAAAAGGAACTAAAGAAGAAAAGGGGGAGGACAGTGTTGGATTGAGTAGAAAATTGAGCGAAACTTCCATATGTGCACCAGAGGAGGATAAAGATGAGGAGGGAAGAAAGATCGAGTTGGGTCCTCAGTGTACCCTCAAAGAACAACTTGAGAAAGATAAGGTTCCAGTTTGCATTCATTTCTTTCTTCCTTTTTTTCACCTCATGCTGTGTTCAACATATAATGATTTAATGCCTTCCAAAATGGTTGTTCTCTTAGGATGATGAGAGCCTCAGAAGGTGGAAGGAACAGCTTCTTGGGAGTGTGGATACCGCTGCTGTAGGAGGTAATGCTTTCTGTTTATGCAAGGATATGCACAACAGTGTATTTCAGATTGCAGCTCGAACCCGACCTCCGGACCCCTCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCGACGATCAAGTCAGTATAGGTCGGATTCCCAGTTTAGTTCGAGGTCAGAAATCATCGTACCTGATCGCGGAATGA

mRNA sequence

ATGAAGTCGTTGGAACTCAAAGTGCGTGCCGATCAACCTCTTATTGATGAAATAACAGAAGAAGTAATAATGGATAATGTGGAGGATCGAAGAGGGAAAAGGAAAGAGATAGAGGAATTTGAGGTGTCTGCCGATCAACCTCATATTGAAGAAATAACAGAAGAAGAAGTAATACTCGATAGTGTGGATCGAAGAGGGAAAAGGAAAGAGAGAGAGGAATCTGAGAATGTTAAAAACCCAAGACGCAAAGATAGGAGGAAAAAAAGGAAATATGATAAAAGCAATTTTATTGGTCAGAACCGGACAGATGTTGAGGAAATTCTAGGTGTGCCCGCGGGTCTGAAAACTGTGAAGGAGCACTCGAGGTCGAAGTCAGGTGGGCAAAGTCTGTTTCTTTTGTCTGCCATTAGGGGGTCTGATTCTGTATTTTTCTTTGGTGGGGTGGATGGTCTTTTGAGGAAATGGGTCTGGAAGAAGGAAATGGAGGATAAAGATGAGGAGGGAAGAAAGATCGAGTTGGGTCCTCAGTGTACCCTCAAAGAACAACTTGAGAAAGATAAGGATGATGAGAGCCTCAGAAGGTGGAAGGAACAGCTTCTTGGGAGTGTGGATACCGCTGCTGTAGGAGGTAATGCTTTCTGTTTATGCAAGGATATGCACAACAGTGTATTTCAGATTGCAGCTCGAACCCGACCTCCGGACCCCTCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCGACGATCAAGTCAGTATAGGTCGGATTCCCAGTTTAGTTCGAGGTCAGAAATCATCGTACCTGATCGCGGAATGA

Coding sequence (CDS)

ATGAAGTCGTTGGAACTCAAAGTGCGTGCCGATCAACCTCTTATTGATGAAATAACAGAAGAAGTAATAATGGATAATGTGGAGGATCGAAGAGGGAAAAGGAAAGAGATAGAGGAATTTGAGGTGTCTGCCGATCAACCTCATATTGAAGAAATAACAGAAGAAGAAGTAATACTCGATAGTGTGGATCGAAGAGGGAAAAGGAAAGAGAGAGAGGAATCTGAGAATGTTAAAAACCCAAGACGCAAAGATAGGAGGAAAAAAAGGAAATATGATAAAAGCAATTTTATTGGTCAGAACCGGACAGATGTTGAGGAAATTCTAGGTGTGCCCGCGGGTCTGAAAACTGTGAAGGAGCACTCGAGGTCGAAGTCAGGTGGGCAAAGTCTGTTTCTTTTGTCTGCCATTAGGGGGTCTGATTCTGTATTTTTCTTTGGTGGGGTGGATGGTCTTTTGAGGAAATGGGTCTGGAAGAAGGAAATGGAGGATAAAGATGAGGAGGGAAGAAAGATCGAGTTGGGTCCTCAGTGTACCCTCAAAGAACAACTTGAGAAAGATAAGGATGATGAGAGCCTCAGAAGGTGGAAGGAACAGCTTCTTGGGAGTGTGGATACCGCTGCTGTAGGAGGTAATGCTTTCTGTTTATGCAAGGATATGCACAACAGTGTATTTCAGATTGCAGCTCGAACCCGACCTCCGGACCCCTCTGAATACTTGGGCGGACCTGCACAAAAAGGTGAGCACTCCGACGATCAAGTCAGTATAGGTCGGATTCCCAGTTTAGTTCGAGGTCAGAAATCATCGTACCTGATCGCGGAATGA

Protein sequence

MKSLELKVRADQPLIDEITEEVIMDNVEDRRGKRKEIEEFEVSADQPHIEEITEEEVILDSVDRRGKRKEREESENVKNPRRKDRRKKRKYDKSNFIGQNRTDVEEILGVPAGLKTVKEHSRSKSGGQSLFLLSAIRGSDSVFFFGGVDGLLRKWVWKKEMEDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVGGNAFCLCKDMHNSVFQIAARTRPPDPSEYLGGPAQKGEHSDDQVSIGRIPSLVRGQKSSYLIAE

Homology

[Close]

BLAST of Moc04g25280 vs. NCBI nr
Match: XP_022133027.1 (rho GDP-dissociation inhibitor 1-like [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-15
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           ED+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD AAVG
Sbjct: 40  EDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDIAAVG 87

[Close]

BLAST of Moc04g25280 vs. NCBI nr
Match: XP_038882895.1 (rho GDP-dissociation inhibitor 1-like [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-15
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD AAVG
Sbjct: 52  DDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDIAAVG 99

[Close]

BLAST of Moc04g25280 vs. NCBI nr
Match: XP_008440066.1 (PREDICTED: rho GDP-dissociation inhibitor 1 isoform X1 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-15
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD +AVG
Sbjct: 46  DDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVG 93

[Close]

BLAST of Moc04g25280 vs. NCBI nr
Match: TYK13004.1 (rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-15
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD +AVG
Sbjct: 46  DDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVG 93

[Close]

BLAST of Moc04g25280 vs. NCBI nr
Match: XP_008440067.1 (PREDICTED: rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo] >XP_016899134.1 PREDICTED: rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-15
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD +AVG
Sbjct: 46  DDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVG 93

[Close]

BLAST of Moc04g25280 vs. ExPASy Swiss-Prot
Match: Q9SFC6 (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-11
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           E+++++  K++LGPQ T+KE LEKDKDDESLR+WKEQLLGSVD   +G
Sbjct: 53  EEEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

[Close]

BLAST of Moc04g25280 vs. ExPASy TrEMBL
Match: A0A6J1BVG7 (rho GDP-dissociation inhibitor 1-like OS=Momordica charantia OX=3673 GN=LOC111005718 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           ED+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD AAVG
Sbjct: 40  EDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDIAAVG 87

[Close]

BLAST of Moc04g25280 vs. ExPASy TrEMBL
Match: A0A1S3B0Z9 (rho GDP-dissociation inhibitor 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484655 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-15
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD +AVG
Sbjct: 46  DDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVG 93

[Close]

BLAST of Moc04g25280 vs. ExPASy TrEMBL
Match: A0A5D3CPP6 (Rho GDP-dissociation inhibitor 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006020 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-15
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD +AVG
Sbjct: 46  DDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVG 93

[Close]

BLAST of Moc04g25280 vs. ExPASy TrEMBL
Match: A0A1S3B0V5 (rho GDP-dissociation inhibitor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484655 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-15
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVD +AVG
Sbjct: 46  DDEDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMSAVG 93

[Close]

BLAST of Moc04g25280 vs. ExPASy TrEMBL
Match: A0A6J1GF88 (rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453629 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+DEEGRKIELGPQCTLK+Q EKDKDDESLRRWKEQLLGSVD +AVG
Sbjct: 47  DDEDEEGRKIELGPQCTLKQQFEKDKDDESLRRWKEQLLGSVDISAVG 94

[Close]

BLAST of Moc04g25280 vs. TAIR 10
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-14
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVGGNAFCLCKDMHN 221
           +D++EE +K+ELGP   LKEQLEKDKDDESLRRWKEQLLGSVD   VG     L K +  
Sbjct: 36  DDEEEEDKKLELGPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILTL 95

Query: 222 SVFQIAARTRPPDPSEYL------GGPAQKG 247
           ++       R PD  + +      G PA KG
Sbjct: 96  TI-------RSPDREDMVLTIPENGKPASKG 119

[Close]

BLAST of Moc04g25280 vs. TAIR 10
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-12
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           +D+++E +K+ELGP   LKEQLE+DKDDESLRRWKEQLLG VD   VG
Sbjct: 36  DDEEDEDKKLELGPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVG 83

[Close]

BLAST of Moc04g25280 vs. TAIR 10
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 162 EDKDEEGRKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDTAAVG 210
           E+++++  K++LGPQ T+KE LEKDKDDESLR+WKEQLLGSVD   +G
Sbjct: 53  EEEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

The following BLAST results are available for this feature:

BLAST of Moc04g25280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133027.1	1.3e-15	95.83	rho GDP-dissociation inhibitor 1-like [Momordica charantia]	[more]
XP_038882895.1	2.8e-15	93.75	rho GDP-dissociation inhibitor 1-like [Benincasa hispida]	[more]
XP_008440066.1	6.3e-15	91.67	PREDICTED: rho GDP-dissociation inhibitor 1 isoform X1 [Cucumis melo]	[more]
TYK13004.1	6.3e-15	91.67	rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008440067.1	6.3e-15	91.67	PREDICTED: rho GDP-dissociation inhibitor 1 isoform X2 [Cucumis melo] >XP_016899...	[more]

BLAST of Moc04g25280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFC6	3.4e-11	64.58	Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV...	[more]

BLAST of Moc04g25280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BVG7	6.2e-16	95.83	rho GDP-dissociation inhibitor 1-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A1S3B0Z9	3.1e-15	91.67	rho GDP-dissociation inhibitor 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A5D3CPP6	3.1e-15	91.67	Rho GDP-dissociation inhibitor 1 isoform X2 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B0V5	3.1e-15	91.67	rho GDP-dissociation inhibitor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
A0A6J1GF88	2.0e-14	87.50	rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Moc04g25280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12070.1	1.5e-14	50.55	Immunoglobulin E-set superfamily protein	[more]
AT1G62450.1	1.8e-12	68.75	Immunoglobulin E-set superfamily protein	[more]
AT3G07880.1	2.4e-12	64.58	Immunoglobulin E-set superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000406	Rho protein GDP-dissociation inhibitor	PFAM	PF02115	Rho_GDI	coord: 160..208 e-value: 1.3E-14 score: 54.4
IPR000406	Rho protein GDP-dissociation inhibitor	PANTHER	PTHR10980	RHO GDP-DISSOCIATION INHIBITOR	coord: 160..210
IPR024792	Rho GDP-dissociation inhibitor domain superfamily	GENE3D	2.70.50.30	Coagulation Factor XIII, subunit A, domain 1	coord: 171..230 e-value: 1.8E-9 score: 39.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..258
None	No IPR available	PANTHER	PTHR10980:SF45	RHO GDP-DISSOCIATION INHIBITOR 1-LIKE	coord: 160..210
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 161..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g25280.1	Moc04g25280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007266	Rho protein signal transduction
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity