Moc04g25250 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g25250
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr4: 18330691 .. 18334047 (-)
RNA-Seq Expression	Moc04g25250
Synteny	Moc04g25250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCACCCGAGTGCGCATAATGGAGGAGACATACAACAACATGTTACAAGCAAATCGTACAGGATCTCAGTCTTGGGTCCCTATGGAAGTGGAAGAGCAACACTTTGAGGGTGAAACTCGAGATCCTCCTTTACAACCTGAGAATGATGATCAACACCTCGTTGCTGATTACAATCGTCAGGAGGGCGACCTAAGGAAAATACTGGCCGACAAGAAGAAGAAGAACTCCGCTCTACGAGGTGTGGATGTCTCTCCTACTTGTTCGTAGAAAAATTCGAACGTGAAAGCCCAATCATGATTTACTCTGATTGTACCTCAAGGAGTAATTACAAGGGAAGAGTTCGACCTAATGAAAAGCAAGATTAATGCTCCGGTCGAGGCTTATAAAGCAAAAATGTGAAATGAAAGAGAGCATGTTCGATGATAGCAAGATGGGCAAATCGCCATTCACTTCGGACATCCTCGAGGCGCCGATCCTGGCAACGGTGCCAACAACTTGTTGGGACTTTCTCTACCTTCAAAAATATTAGAGACTCGTGCAAGCGCACACTGTTAGGGATGTGTTTGAACATGTGGGAAATTCCCTCTCTACCCCTCATTAATCAATACGCACGTTTTGGCAAAATAGTCTTTAAAATTGCACCAGGTGCATTTTCCTAGAAAAAACCGCATTTTTCTCATATTTTTCCTAAAGTACCATAGTTTGACTTTTATTCAGATACGTTCTATGCATGTTCTACTTTAAGAATATGTGATACTTTTTAGCAAATAATGATGGGAAAGGGGTAAAAAACGTGGTCAAACAAGGCTATCGACACATGTTTTTGTAGTAAAAAGTCAACCCTAACACCGACCAAGTTCAAAACACCCACCATGAAACCATATGATGGATTCACAGACCCAAAAGATTATATGGAAGTCTTTGAGGGTCTAATGGACTTCCAGGCTGCATCCGACGACATCAAGTGCCAAGCATTCTAGATTGCTTTGACTGGAAGTGCTCGACTTTGGTACCGAAGGCTGCCAACGAGGTCGACCTCGACCTATAGTCAGTTGATGAAAAATTTCATCAGCCAGTTCTCTTCTCGGCACTATGACAAGAAAACAACCACACACCTCACCACCATTCGACAAAAGGAAGACGAGCTTTTAAGAGATTATGTGACCAGGTTCTAGGAGGAACAATTGAAGCTCACCCACTGTTCGGACGACGACTCTGCTATGTGCTACTTCCTTATCGGCTTGACCGATGAAGCCCTAACTGTTAAGTAGGGAGATGAGTCTCCGGTAACCTTCGTAGAGATTTTGTAGAAGGCCAAGAAGGTAATTAACAGTCAAGAGCTGCTCCAGAACAAGACAGATCGGATAGAGAAGAAATCTGATCAGAAGAGGATGAATCAGTCTGAAAAGGGCAATGCAGACTCCAAGTCTCAAGACAAGGGGTCGACATCTCAGTCCTCCCAGGCATTCAAACTCAGGCTCCAACCGAGGCCGACCTTATTAGTGATATACTCCCACCACCATCCCAGTCTCAAAGATTCTTATTAGTATCGAGGAGACTGGGATGTAGTGGCACGACCCGTCCCAAAACATTTACTAGTCTTAGAACGAGTCGTGCCAACCACATGCCCCGACTAACTACGGAGTCCGTGGTCAATTTCTTATTCTCTTTGACCTGAACTTTGACTAACAAGCACTGGACGTAAACAGAATAAAATAATAATCTCTACAGAACAACTCTTTTGTTATCCATTCTCAACAATCTTTTCTATCAATATTTTGTAAATATAAAACTCTTTACAAAAATAAACTACATATATGTACAAAATGATATGCGTGGCACAAACTGATCTACTTTCTCCTTGAAACTCTAAGAAACTCAGGTACACCCTAGGGGCAAAAACAAATGATAAACAGTGAGCTGGGAAGCTAAGAGAGTGGTAAGTTAATAAGAAAAATATTCGTATAGGACTTATTTCTTAAACAACATAAAGTCAGGCTCTTAAACAAACTCCATAAACTGCAACAACAAACTTTCTCATTAAAACTTGTAACAAGGATTTCTTTCCAGGCAAATCAATAAGGCAACGCTCTCAAGTGTAGGATTTGGAATCTGGATTTGGCCATAATTGCCTCGACATTCTCCTGCATCCCCTGCGACCCAGTTACACCAACTTCTCAACCTGCTCCAAAACAAATTCTTTCAAACATAAAACAGTCTAGTGAAAACTCAACACCACACATGTACCCATATTCTATTCTGGTCTACTAGCGTAGAGTAATCTCAATACACACAGCAGAATAATTCTGGTGTACTAGCATAGAGTAATCTCAATACACATAACAGAATAATTCTGGTGTACTAGCATAAAGTAATCTCAATACACATAGCAGAATAATTCTCTCAATGCGTGGAGTCAAATGGTCCCAATACCTTTCTATTTCTGGGTATACTATAGAAACACATTCACATAGCATACGGATATTCGCCTGGATATAATAACATGGTGGTTTGAAAACTATTCTCAATCTCATAAACTGTTCTAAAATTCTTTTCTTCTACCTTCCAATAACTTTTTTAGCTTTCTCAAATCATTTCTAAAATATTTATTTCTAACAATATTTCATAAAATTCTAAAATCATTTTCTGAAATATCTTTCTAAATAACATTTCAAACATTTCTCTAAAATCGTAAAACACTTCTAAATTCTCAGAAACATTTCCAAATTCTTAAACAAAGACATTTTACTTCATTCTCAGCAGAAATGCTAATACATAATATATATAATTTCCCATAAACAACTTTCAGATAGATATACATAATATATATTATGTATGCTAAATCATACATAATATACACGTTTTGAGTATGCCCTCCGCTTCAACTTTCGCACCTTCAATAACAAGGTCGAGTATGAAGCACTACTGGCCAGACTATGCATGACCAAAGGACTTGGAGCAAATTTCATCTAAGTATACAATGATTCTCAGTTGATAGTGAATTAATTGAAAGAAGAATACCAGGTGAAGCACTCCCGTAAGGAGAAGTCGCTTAGCAAGATAGGTCGCACCTCGCCCAGTTTAACACTTATATGTCATTCAGATTCTAGATTAGAAAACTCAAATGCAGATGCTCTAGCTAAATTGACATCTGCGTACGAGACCGATCTGGCAAGATCGGTTTCAATGGAGATACTTGACACTCTATCCATTATAGAGCTTGATGTGATGGAGATTGACTCTCAGCCTCCATCATGGATGTATCTGGTCAGGACATACCTGACAAGCAGTGTCCCGACAGATCCAAAAGAAGCAAAGAAGCTCGGTCGGAAGGCAGCTTGGTTCATACTCTGA

mRNA sequence

ATGCGCACCCGAGTGCGCATAATGGAGGAGACATACAACAACATGTTACAAGCAAATCGTACAGGATCTCAGTCTTGGGTCCCTATGGAAGTGGAAGAGCAACACTTTGAGGGTGAAACTCGAGATCCTCCTTTACAACCTGAGAATGATGATCAACACCTCGTTGCTGATTACAATCGTCAGGAGGGCGACCTAAGGAAAATACTGGCCGACAAGAAGAAGAAGAACTCCGCTCTACGAGGCTGCATCCGACGACATCAAGTGCCAAGCATTCTAGATTGCTTTGACTGGAAGTGCTCGACTTTGGTACCGAAGGCTGCCAACGAGAAGGCCAAGAAGGTAATTAACAGTCAAGAGCTGCTCCAGAACAAGACAGATCGGATAGAGAAGAAATCTGATCAGAAGAGGATGAATCAGTCTGAAAAGGGCAATGCAGACTCCAAGTCTCAAGACAAGGGGTCGACATCTCAGTCCTCCCAGGCATTCAAACTCAGGCTCCAACCGAGGCCGACCTTATTAGTGATATACTCCCACCACCATCCCAATTCTAGATTAGAAAACTCAAATGCAGATGCTCTAGCTAAATTGACATCTGCGTACGAGACCGATCTGGCAAGATCGGTTTCAATGGAGATACTTGACACTCTATCCATTATAGAGCTTGATGTGATGGAGATTGACTCTCAGCCTCCATCATGGATGTATCTGGTCAGGACATACCTGACAAGCAGTGTCCCGACAGATCCAAAAGAAGCAAAGAAGCTCGGTCGGAAGGCAGCTTGGTTCATACTCTGA

Coding sequence (CDS)

ATGCGCACCCGAGTGCGCATAATGGAGGAGACATACAACAACATGTTACAAGCAAATCGTACAGGATCTCAGTCTTGGGTCCCTATGGAAGTGGAAGAGCAACACTTTGAGGGTGAAACTCGAGATCCTCCTTTACAACCTGAGAATGATGATCAACACCTCGTTGCTGATTACAATCGTCAGGAGGGCGACCTAAGGAAAATACTGGCCGACAAGAAGAAGAAGAACTCCGCTCTACGAGGCTGCATCCGACGACATCAAGTGCCAAGCATTCTAGATTGCTTTGACTGGAAGTGCTCGACTTTGGTACCGAAGGCTGCCAACGAGAAGGCCAAGAAGGTAATTAACAGTCAAGAGCTGCTCCAGAACAAGACAGATCGGATAGAGAAGAAATCTGATCAGAAGAGGATGAATCAGTCTGAAAAGGGCAATGCAGACTCCAAGTCTCAAGACAAGGGGTCGACATCTCAGTCCTCCCAGGCATTCAAACTCAGGCTCCAACCGAGGCCGACCTTATTAGTGATATACTCCCACCACCATCCCAATTCTAGATTAGAAAACTCAAATGCAGATGCTCTAGCTAAATTGACATCTGCGTACGAGACCGATCTGGCAAGATCGGTTTCAATGGAGATACTTGACACTCTATCCATTATAGAGCTTGATGTGATGGAGATTGACTCTCAGCCTCCATCATGGATGTATCTGGTCAGGACATACCTGACAAGCAGTGTCCCGACAGATCCAAAAGAAGCAAAGAAGCTCGGTCGGAAGGCAGCTTGGTTCATACTCTGA

Protein sequence

MRTRVRIMEETYNNMLQANRTGSQSWVPMEVEEQHFEGETRDPPLQPENDDQHLVADYNRQEGDLRKILADKKKKNSALRGCIRRHQVPSILDCFDWKCSTLVPKAANEKAKKVINSQELLQNKTDRIEKKSDQKRMNQSEKGNADSKSQDKGSTSQSSQAFKLRLQPRPTLLVIYSHHHPNSRLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTSSVPTDPKEAKKLGRKAAWFIL

Homology

[Close]

BLAST of Moc04g25250 vs. NCBI nr
Match: XP_022143565.1 (uncharacterized protein LOC111013434 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-18
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R +NSN+DALAKL SAYETDLARSV +EILD  SI+E D+MEIDS PPSWM  ++ +L  
Sbjct: 110 RSQNSNSDALAKLASAYETDLARSVPVEILDNPSILEPDMMEIDSHPPSWMEPIKDFLGG 169

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
            VP DP+E KK+ RKAA ++L
Sbjct: 170 KVPADPRETKKMTRKAARYLL 190

[Close]

BLAST of Moc04g25250 vs. NCBI nr
Match: XP_022150033.1 (uncharacterized protein LOC111018305 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-18
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R +NSN DA AKL SAYET+LARSVS+EILD  SI+E D+ME+DSQPPSWM  +R  L  
Sbjct: 201 RSQNSNVDAFAKLASAYETNLARSVSVEILDNPSILEPDMMEVDSQPPSWMDSIRNILEG 260

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
           ++P D +EAKK+ RKAA F+L
Sbjct: 261 NIPIDLREAKKMTRKAARFLL 281

[Close]

BLAST of Moc04g25250 vs. NCBI nr
Match: XP_022149378.1 (uncharacterized protein LOC111017809 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-18
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R ENSNADALAKL SAYETDLARSV +EILD  SI+E D+ME+D+  PSWM L+  ++  
Sbjct: 222 RSENSNADALAKLASAYETDLARSVPVEILDNPSILEPDLMEVDTPTPSWMDLIVEFIKG 281

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
           ++P DPKE KK+ RK A FIL
Sbjct: 282 NLPQDPKEHKKMARKVAQFIL 302

[Close]

BLAST of Moc04g25250 vs. NCBI nr
Match: XP_022156791.1 (uncharacterized protein LOC111023625 [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 5.9e-18
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           RL+ SNADALAKL S YETDLARSV +EILD  SI+ELD+MEIDS P SWM  ++ +L  
Sbjct: 211 RLQISNADALAKLASPYETDLARSVPVEILDNPSILELDMMEIDSHPSSWMEPIKDFLGG 270

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
            VP DP+E KK+ RKAA ++L
Sbjct: 271 KVPADPRETKKMTRKAARYLL 291

[Close]

BLAST of Moc04g25250 vs. NCBI nr
Match: XP_022142775.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-17
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R +NSNADALAKL SAYETDL  SV +EILD  SI+E ++ME+DSQPPSWM  +R +L  
Sbjct: 25  RSQNSNADALAKLASAYETDLMISVPVEILDKPSILEPEMMEVDSQPPSWMDSIRNFLEG 84

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
           ++  DP+EAKK+ RKAA + L
Sbjct: 85  NILVDPREAKKMTRKAARYFL 105

[Close]

BLAST of Moc04g25250 vs. ExPASy TrEMBL
Match: A0A6J1CP53 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-19
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R +NSN+DALAKL SAYETDLARSV +EILD  SI+E D+MEIDS PPSWM  ++ +L  
Sbjct: 110 RSQNSNSDALAKLASAYETDLARSVPVEILDNPSILEPDMMEIDSHPPSWMEPIKDFLGG 169

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
            VP DP+E KK+ RKAA ++L
Sbjct: 170 KVPADPRETKKMTRKAARYLL 190

[Close]

BLAST of Moc04g25250 vs. ExPASy TrEMBL
Match: A0A6J1D8D3 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018305 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R +NSN DA AKL SAYET+LARSVS+EILD  SI+E D+ME+DSQPPSWM  +R  L  
Sbjct: 201 RSQNSNVDAFAKLASAYETNLARSVSVEILDNPSILEPDMMEVDSQPPSWMDSIRNILEG 260

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
           ++P D +EAKK+ RKAA F+L
Sbjct: 261 NIPIDLREAKKMTRKAARFLL 281

[Close]

BLAST of Moc04g25250 vs. ExPASy TrEMBL
Match: A0A6J1D6M1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-18
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R ENSNADALAKL SAYETDLARSV +EILD  SI+E D+ME+D+  PSWM L+  ++  
Sbjct: 222 RSENSNADALAKLASAYETDLARSVPVEILDNPSILEPDLMEVDTPTPSWMDLIVEFIKG 281

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
           ++P DPKE KK+ RK A FIL
Sbjct: 282 NLPQDPKEHKKMARKVAQFIL 302

[Close]

BLAST of Moc04g25250 vs. ExPASy TrEMBL
Match: A0A6J1DW17 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023625 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           RL+ SNADALAKL S YETDLARSV +EILD  SI+ELD+MEIDS P SWM  ++ +L  
Sbjct: 211 RLQISNADALAKLASPYETDLARSVPVEILDNPSILELDMMEIDSHPSSWMEPIKDFLGG 270

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
            VP DP+E KK+ RKAA ++L
Sbjct: 271 KVPADPRETKKMTRKAARYLL 291

[Close]

BLAST of Moc04g25250 vs. ExPASy TrEMBL
Match: A0A6J1CLW5 (protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-17
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 184 RLENSNADALAKLTSAYETDLARSVSMEILDTLSIIELDVMEIDSQPPSWMYLVRTYLTS 243
           R +NSNADALAKL SAYETDL  SV +EILD  SI+E ++ME+DSQPPSWM  +R +L  
Sbjct: 25  RSQNSNADALAKLASAYETDLMISVPVEILDKPSILEPEMMEVDSQPPSWMDSIRNFLEG 84

Query: 244 SVPTDPKEAKKLGRKAAWFIL 265
           ++  DP+EAKK+ RKAA + L
Sbjct: 85  NILVDPREAKKMTRKAARYFL 105

The following BLAST results are available for this feature:

BLAST of Moc04g25250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143565.1	1.2e-18	64.20	uncharacterized protein LOC111013434 [Momordica charantia]	[more]
XP_022150033.1	3.5e-18	64.20	uncharacterized protein LOC111018305 [Momordica charantia]	[more]
XP_022149378.1	4.5e-18	64.20	uncharacterized protein LOC111017809 [Momordica charantia]	[more]
XP_022156791.1	5.9e-18	64.20	uncharacterized protein LOC111023625 [Momordica charantia]	[more]
XP_022142775.1	5.0e-17	61.73	protein NYNRIN-like [Momordica charantia]	[more]

BLAST of Moc04g25250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g25250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP53	5.8e-19	64.20	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1	[more]
A0A6J1D8D3	1.7e-18	64.20	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018305 PE=4 SV=1	[more]
A0A6J1D6M1	2.2e-18	64.20	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1	[more]
A0A6J1DW17	2.9e-18	64.20	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023625 PE=4 SV=1	[more]
A0A6J1CLW5	2.4e-17	61.73	protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1	[more]

BLAST of Moc04g25250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g25250.1	Moc04g25250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity