Moc04g25050 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g25050
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: my s in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Location	chr4: 18190849 .. 18191880 (+)
RNA-Seq Expression	Moc04g25050
Synteny	Moc04g25050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTAGTCTCGCTAATCTCGCGACGGTTACACCCGGTAATCTCGGGACCGTCGGTTACACCCGGTAATCTCGGGACCGACGGTTACACCCGATAATCACGCCGCTGACAGTAGCTCACATCAGCCCCCACCGAGCTTCCCGGTAGGTCGGACCTCGGCCAGGTTCACCTCGGCCCTCATACTTAGTATCTGTCAACGCTAGTGGTGGTGATCTCGGCCGTCCGAGCTGGGCATGACTCATGACTCATCTTGGAGCACCAATAGGGGTCCTCCACGTGTCCAGGGTATTCTTTTCCCCAAACATTGGTCCCCTCTCTGTCTGGTCCGATCTCGACCTGGCAGAGAAGTTCATTCGACTTGCTTTGGACGCGTGGCGACTTCCTATTCGTGGGAAAATATAACCGTTGCGATGGATTTATCGTCGGAATATTCAAATATTCCGACGCTTCGGATCTTAGGGAGGATCCTAGCCGCTCGTTGATTACACATGTACGGTGGGGAAATTTTTCCGACGAGCTATAAATACCCCCAATCCTTCAGGTCATACCTTACGTTCCCTGAATTCTTGGAGTTCGATCTGAAGGCAGCTCGAACCCTTGGTAGGTCGGTCTCTTCCCTCACTTTCTCTTTCGAACATAGTTGCCATGTCGTCCTCTTTTAGCAGCGACTTAGGGTCCGATGAGGATTTAGCTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTTCGATGACGGGGAGGATAGTGATGCCTCCACCTCGGGTCAGGGTTTGGAATACCCTTCTAGGATACCTGAGCACTACCTCGGATCCCTTCGTAAGGGGTTCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGGTCACTCTCTACTTCAAAATGTTTGAGTACGGCCTCAGACTTCCCCTTCACCCTTTCGTCCAAGAGTTTCTTTTCCGAACTGGGCTGGCTCCGACTCAAGTGGCCCCCAATGGGTGA

mRNA sequence

ATGGGTGGTAGTCTCGCTAATCTCGCGACGGTTACACCCGGTAATCTCGGGACCGTCGGTTACACCCGGCAGCTCGAACCCTTGGTAGGTCGGTCTCTTCCCTCACTTTCTCTTTCGAACATAGTTGCCATGTCGTCCTCTTTTAGCAGCGACTTAGGGTCCGATGAGGATTTAGCTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTTCGATGACGGGGAGGATAGTGATGCCTCCACCTCGGGTCAGGGTTTGGAATACCCTTCTAGGATACCTGAGCACTACCTCGGATCCCTTCGTAAGGGGTTCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGGTCACTCTCTACTTCAAAATGTTTGAGTACGGCCTCAGACTTCCCCTTCACCCTTTCGTCCAAGAGTTTCTTTTCCGAACTGGGCTGGCTCCGACTCAAGTGGCCCCCAATGGGTGA

Coding sequence (CDS)

ATGGGTGGTAGTCTCGCTAATCTCGCGACGGTTACACCCGGTAATCTCGGGACCGTCGGTTACACCCGGCAGCTCGAACCCTTGGTAGGTCGGTCTCTTCCCTCACTTTCTCTTTCGAACATAGTTGCCATGTCGTCCTCTTTTAGCAGCGACTTAGGGTCCGATGAGGATTTAGCTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTTCGATGACGGGGAGGATAGTGATGCCTCCACCTCGGGTCAGGGTTTGGAATACCCTTCTAGGATACCTGAGCACTACCTCGGATCCCTTCGTAAGGGGTTCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGGTCACTCTCTACTTCAAAATGTTTGAGTACGGCCTCAGACTTCCCCTTCACCCTTTCGTCCAAGAGTTTCTTTTCCGAACTGGGCTGGCTCCGACTCAAGTGGCCCCCAATGGGTGA

Protein sequence

MGGSLANLATVTPGNLGTVGYTRQLEPLVGRSLPSLSLSNIVAMSSSFSSDLGSDEDLARRLESELEEIENFRFFDDGEDSDASTSGQGLEYPSRIPEHYLGSLRKGFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPTQVAPNG

Homology

[Close]

BLAST of Moc04g25050 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 231.5 bits (589), Expect = 5.5e-57
Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 44  MSSSFSSDLGSDEDLARRLESELEEIENFRFFDDGEDSDASTSGQGLEYPSRIPEHYLGS 103
           MSSS SS+L  + DLARRLES+LEEIEN R  DDGEDSDASTSGQGLEYPSRIPEHYLGS
Sbjct: 1   MSSSISSNL--ESDLARRLESKLEEIENXRISDDGEDSDASTSGQGLEYPSRIPEHYLGS 60

Query: 104 LRKGFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 163
           LR+GFAIPENILLR+PEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP
Sbjct: 61  LRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 120

Query: 164 TQVAPNG 171
            QVAPNG
Sbjct: 121 AQVAPNG 125

[Close]

BLAST of Moc04g25050 vs. NCBI nr
Match: XP_021824477.1 (uncharacterized protein LOC110765618 [Prunus avium])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 57  DLARRLESELEEIENFRFFDDGEDSDASTSGQG-----LEYPSRIPEHYLGSLRKGFAIP 116
           D   R E    E E     D G+   A+    G      EYPS I    L  LR+ ++IP
Sbjct: 97  DTTERREVGTAENEELGTADQGDVGTANEGEVGDVWSADEYPSTITRKRLRRLREEYSIP 156

Query: 117 ENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPTQVAPN 170
            +I LR P + E+   PP  WVTL   M + G+RLPL PF+QE++ R G+AP Q+ PN
Sbjct: 157 SSIRLRAPTKNEKPSTPPLEWVTLCSDMLKQGVRLPLSPFLQEWIARLGVAPHQMNPN 214

[Close]

BLAST of Moc04g25050 vs. NCBI nr
Match: PQQ09484.1 (uncharacterized protein Pyn_05761 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-11
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 101 LGSLRKGFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTG 160
           L  +R+ + +P +++  +P+  +    PP GWVTLY++MF+ GLRLPLHPFVQ ++   G
Sbjct: 6   LDRIRREYEVPRDVIFALPQGDDCPSRPPRGWVTLYWEMFKNGLRLPLHPFVQRWMAFLG 65

Query: 161 LAPTQVAPN 170
           +AP Q+ PN
Sbjct: 66  IAPHQMNPN 74

[Close]

BLAST of Moc04g25050 vs. NCBI nr
Match: TXG53679.1 (hypothetical protein EZV62_018935 [Acer yangbiense])

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-10
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 63  ESELEEIENFRFFDDGEDSDASTSGQGLEYP-----SRIPEHYLGSLRKGFAIPENILLR 122
           E +LE   +    D G+ S+A +S    ++      S + +  L +L + + IP NI+LR
Sbjct: 324 EVDLESTADLSNDDCGKSSEAISSEGEADWSIDAIRSTMTQTSLETLERSYGIPNNIVLR 383

Query: 123 IPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPTQVAPN 170
           +P++   A +PP+G VTL+   FE+GL+LP HPF++  L     AP Q++PN
Sbjct: 384 LPKKEHLASSPPQGAVTLHSTFFEFGLKLPFHPFLRYMLSHLQCAPAQLSPN 435

[Close]

BLAST of Moc04g25050 vs. NCBI nr
Match: EXB62863.1 (hypothetical protein L484_008713 [Morus notabilis])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-09
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 91  EYPSRIPEHYLGSLRKGFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHP 150
           E+ + + ++ + +LR  F IP  + LRIP  G+    P  G + LY   FEYGLRLP HP
Sbjct: 13  EHVTLLTQNDMNNLRLKFNIPAGVRLRIPSVGDLPSCPKPGEIGLYTVAFEYGLRLPFHP 72

Query: 151 FVQEFLFRTGLAPTQVAPN 170
           F++  L    LAPTQ++PN
Sbjct: 73  FIRTVLAHFDLAPTQLSPN 91

[Close]

BLAST of Moc04g25050 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.6e-57
Identity = 114/127 (89.76%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 44  MSSSFSSDLGSDEDLARRLESELEEIENFRFFDDGEDSDASTSGQGLEYPSRIPEHYLGS 103
           MSSS SS+L  + DLARRLES+LEEIEN R  DDGEDSDASTSGQGLEYPSRIPEHYLGS
Sbjct: 1   MSSSISSNL--ESDLARRLESKLEEIENXRISDDGEDSDASTSGQGLEYPSRIPEHYLGS 60

Query: 104 LRKGFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 163
           LR+GFAIPENILLR+PEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP
Sbjct: 61  LRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 120

Query: 164 TQVAPNG 171
            QVAPNG
Sbjct: 121 AQVAPNG 125

[Close]

BLAST of Moc04g25050 vs. ExPASy TrEMBL
Match: A0A6P5TBM4 (uncharacterized protein LOC110765618 OS=Prunus avium OX=42229 GN=LOC110765618 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-12
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 57  DLARRLESELEEIENFRFFDDGEDSDASTSGQG-----LEYPSRIPEHYLGSLRKGFAIP 116
           D   R E    E E     D G+   A+    G      EYPS I    L  LR+ ++IP
Sbjct: 97  DTTERREVGTAENEELGTADQGDVGTANEGEVGDVWSADEYPSTITRKRLRRLREEYSIP 156

Query: 117 ENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPTQVAPN 170
            +I LR P + E+   PP  WVTL   M + G+RLPL PF+QE++ R G+AP Q+ PN
Sbjct: 157 SSIRLRAPTKNEKPSTPPLEWVTLCSDMLKQGVRLPLSPFLQEWIARLGVAPHQMNPN 214

[Close]

BLAST of Moc04g25050 vs. ExPASy TrEMBL
Match: A0A314YW75 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05761 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 101 LGSLRKGFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTG 160
           L  +R+ + +P +++  +P+  +    PP GWVTLY++MF+ GLRLPLHPFVQ ++   G
Sbjct: 6   LDRIRREYEVPRDVIFALPQGDDCPSRPPRGWVTLYWEMFKNGLRLPLHPFVQRWMAFLG 65

Query: 161 LAPTQVAPN 170
           +AP Q+ PN
Sbjct: 66  IAPHQMNPN 74

[Close]

BLAST of Moc04g25050 vs. ExPASy TrEMBL
Match: A0A5C7HA73 (Plus3 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018935 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 63  ESELEEIENFRFFDDGEDSDASTSGQGLEYP-----SRIPEHYLGSLRKGFAIPENILLR 122
           E +LE   +    D G+ S+A +S    ++      S + +  L +L + + IP NI+LR
Sbjct: 324 EVDLESTADLSNDDCGKSSEAISSEGEADWSIDAIRSTMTQTSLETLERSYGIPNNIVLR 383

Query: 123 IPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPTQVAPN 170
           +P++   A +PP+G VTL+   FE+GL+LP HPF++  L     AP Q++PN
Sbjct: 384 LPKKEHLASSPPQGAVTLHSTFFEFGLKLPFHPFLRYMLSHLQCAPAQLSPN 435

[Close]

BLAST of Moc04g25050 vs. ExPASy TrEMBL
Match: A0A2N9HKL4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40370 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.4e-10
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 91  EYPSRIPEHYLGSLRKGFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHP 150
           E PS++ E  +G LR  F IPENI++R+PE GE A       V LY      GLRLP  P
Sbjct: 65  EVPSKLVEKDIGRLRSRFQIPENIVIRLPENGEWACTSNGEDVALYEDSLVAGLRLPFRP 124

Query: 151 FVQEFLFRTGLAPTQVAPN 170
           F +  L R GLAP+Q+ PN
Sbjct: 125 FERRLLHRFGLAPSQLNPN 143

[Close]

BLAST of Moc04g25050 vs. TAIR 10
Match: AT1G32010.1 (myosin heavy chain-related )

HSP 1 Score: 43.1 bits (100), Expect = 2.6e-04
Identity = 26/98 (26.53%), Postives = 47/98 (47.96%), Query Frame = 0


Query: 76  DDGEDSDASTSGQGLEY------PSRIPEHYLGSLRKGFAIPENILLRIPEEGERADNPP 135
           D+ E +D + SG+  +       P+      +G       +P  + +RIP + +R  + P
Sbjct: 99  DERESADENVSGESRKNEMVDLGPTTSTRESVGQTTDFCLLPGPLTIRIPRDTDRPSDCP 158

Query: 136 EGWVTLYFKMF-EYGLRLPLHPFVQEFLFRTGLAPTQV 167
           EG++ L+   F E GLR P+  F+  F     +A +Q+
Sbjct: 159 EGFICLFEGFFTETGLRFPIPDFLMRFCRNRQIAISQL 196

[Close]

BLAST of Moc04g25050 vs. TAIR 10
Match: AT5G38190.1 (INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G32010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 3.3e-04
Identity = 26/98 (26.53%), Postives = 47/98 (47.96%), Query Frame = 0


Query: 76  DDGEDSDASTSGQGLEY------PSRIPEHYLGSLRKGFAIPENILLRIPEEGERADNPP 135
           D+ E +D + SG+  +       P+      +G       +P  + +RIP + +R  + P
Sbjct: 99  DERESADENVSGESRKNEMVDLGPTTSTRESVGRTTDFCLLPGPLTIRIPRDTDRPSDCP 158

Query: 136 EGWVTLYFKMF-EYGLRLPLHPFVQEFLFRTGLAPTQV 167
           EG++ L+   F E GLR P+  F+  F     +A +Q+
Sbjct: 159 EGFICLFEGFFTETGLRFPIPDFLMRFCRNRQIAISQL 196

The following BLAST results are available for this feature:

BLAST of Moc04g25050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159063.1	5.5e-57	89.76	uncharacterized protein LOC111025502, partial [Momordica charantia]	[more]
XP_021824477.1	1.2e-11	39.83	uncharacterized protein LOC110765618 [Prunus avium]	[more]
PQQ09484.1	3.5e-11	44.93	uncharacterized protein Pyn_05761 [Prunus yedoensis var. nudiflora]	[more]
TXG53679.1	2.9e-10	35.71	hypothetical protein EZV62_018935 [Acer yangbiense]	[more]
EXB62863.1	2.5e-09	43.04	hypothetical protein L484_008713 [Morus notabilis]	[more]

BLAST of Moc04g25050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g25050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXS5	2.6e-57	89.76	uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6P5TBM4	5.8e-12	39.83	uncharacterized protein LOC110765618 OS=Prunus avium OX=42229 GN=LOC110765618 PE...	[more]
A0A314YW75	1.7e-11	44.93	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_057...	[more]
A0A5C7HA73	1.4e-10	35.71	Plus3 domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018935 PE...	[more]
A0A2N9HKL4	5.4e-10	48.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40370 PE=4 SV=1	[more]

BLAST of Moc04g25050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32010.1	2.6e-04	26.53	myosin heavy chain-related	[more]
AT5G38190.1	3.3e-04	26.53	INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidops...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF04195	Transposase_28	coord: 135..170 e-value: 1.7E-6 score: 28.2
None	No IPR available	PANTHER	PTHR31099	OS06G0165300 PROTEIN	coord: 39..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g25050.1	Moc04g25050.1	mRNA