Moc04g24990 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24990
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr4: 18143857 .. 18146688 (+)
RNA-Seq Expression	Moc04g24990
Synteny	Moc04g24990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAACAAGAGACAATTCTTACAATCCAGTCTTTTCACCAATGCTCAAGTCTCATATCAATCAAATTGAGTGTGTCAAACTACCTACTTTGGAAGTCGCAAGTTCTACCACTAGTGAGGAGTTTGGGAATTGAAGACCACCTCAAGGAAAGCAAGAAACCAGAGGAGCTCTTGACTGACAAAGATGGAGAAACTATTCCAAATCCTCAATACAACATTTGGCTCAACAATGATGGCCTTCTAACCTCTTGGCTTCTAGGCATCATAACTGAGGATGTGTTGGCCACAATTGAAGGAACAGATTCAGCATACCAAATGTGGAAATCTCTAGAAGAACAACTTCTCACCGTTACAAAAGAAAACGAAATTCACCTCAATGAAGCCATCCTGAGTCTGAAAAAGGGAAGTCTCTCTTTAGATGAGTATTTGAAGAAAACTAAATCGTTTTGTGATCAACTTGCAGCTATGAAGAAACCAGTGGATGATCTCACAAAGGTGTTTCATGTTGCTAGAGGACTAGGAGCTAAATACCATGGATTTAAAACAGCCATGTTGTCCAAAGCACCATATCAAACCTATAATGAGTTCATCCTAGCTCTTAAAGCACATGAGGTAATGATAAATGTTGATAACGACGAGGAAAAGATGTCACAACTTGACCACAATCAAGCATTTTATGCCCAAAAAGGAAGAGGCAGAGGCAGAGGAAGAAATTTCTCTTCTAGAGGAAGAGGTTTCCCTTAAGGCAGACAAATCGCTCCTGAAAATGCAGGTTACACAAGTCCTCATAAAACTAGCTCTTTCCAAGGGAGACACAAAGACTCAGGTTTGTCCAATTCCCCCTTTCACAAAAATGAGAGACTGACATGTCAAATCTGTGGTAAAGGAAACCATAATGCATTGGAATGCTGGAATAGATTTGATCACTCATTCCAATCAGAAGATGTTCCGAAAGCCTTGGCTGCACTGAACCTAAATGAAGGAGCAGACCCTCTCTTGTATGCTGATTCAGGTGCTACCTCACATATCCTGAATGATCCAAGTAAGGTCCTTACCTATCAACCTTATAAAGGAAAAGAAAAAATATTTGTAGGGAATGGAAATCAACTTAACATATCACATATTGGACAAGGCAAAATAATCACTAGTTACAAAGATCTTAAGTTGGAAAATGTTCTAATTGTGCCAGAAATTAAAAAAAATCTAATCTCTATTAGTAAACTCACACAAGATAATGATTGCACCATCACTTTTCTTGCTGATAAATTTGTTATAAAGAACAAACAGGGGCGGATTCTTGCTGAAGGAGCAAAGAAAGGAGGGTTGTATGCACTTGATGAGCAGAAACAAAGACAAGAAGTCATGGTTGCAATATCTTCTCAAAATAAGGCTGATTCATCCATATGGCATAGAAGAATGGGACATGTGAATCACAACTCTCTCAAACTTTTAAGCGAACAAAGTCTGATAAACATGTCCTGTTGGACAAAGCAAAGAAAAAATATGTGAAAGCTGTCAAATGGGAAAAAGTTGCAGATTACCCTTTGAATCTAACCATGTTTTAAGTTTATTTCCATTAGAAAAAATACATTGTGATTTGTGGGGCTTAGCTCCTATTATTTCCTGCCAAAACTTCAAATATTATGCATGTTTTGTTGATGAGTATTCAAGATTCACTTGGCTATACCCTCTTAAAAGAAAATCAGATTTTTTCTCTTGTTTTAAAAAGTTCAAAATGCTAGTTGAAAATCAATTTGACAGGAAAATCAAAGTATTTCAAAGCGATGGAGGTGGTGAGTTCACCTCTTTTGAGCTCAAGAAACTCTTGGAAGAAAGTGGGATACACCATCAATTCTCTTGTCCATTTACACCTCAACAAAATGGGGTGGTGGAGATGAAACATCGTCATATTATAGAAACAGGTTTGACTCTTATGTTTCAATCTAATATGCCTTTAAAATATTGGGTGGATGCATTCCTCACTGCCGTGTATCTCATTAATAGAATGCCATCCAAGGCTCTTAATGAGCAAATTCCATTTCAAAAATTGTTTCAAAAGGCTCCTAATTATAGTGGCATCAAGGTATTTGGATGTAAATGCTTCCCTTATCTTAGAAACTATGGTAAACATAAGTTTTCAAAAAGAACATATCCATGTGTTTTCATCGGATATAGTCCTATACACAAAGGATATAGGTGTCTAGATCCGAGAAGTAATAGGGTATACATATCTTGCCATGTGATCTTTGATGAAGAATGTTATCCTTTAACTAACAATGCACAACACACAAACAACACACACCTTGTAGCTACTGAATTCTCAGGTTTTGAAGAATGGGAGAACACATCAGAAGAATCAAACAAGGCAAAATCACAGCCAACAACTCTTGGAGAGCCAATCAAAACCTCACACTGTTGTGACATAGAGAATAACAACAGTTCACAAGAAGGGTCAATTGAGGAAGAAGATCATTTTCAAGAAAATAACATGCCGCAGGAGATTATAATTGAGGAAGAAAATATTTCACCTACTGCCAACACAGGAGATGATAACTCAAGGAATAGAAGAGTCTACCTCAAACAACAGAACACCCATCTTCAACAAACACAATGAGCATTCTCATCTCCTTAACCTTCCTAACTCTAATATATCAAATTCTAGCAATCTTCCAGATATTAGCAAACAGTTATATGTGGATCTTAACTTATATTCTGCCGGTGAACAAAATTCTGCAGGTGAACAAAATGATAGTAGTACAAGAACATCACATCCAGAAGGCTTATGCCAAATTCCATCGGGTCATCACATGGTTACAAGAAGGAAATTAG

mRNA sequence

ATGGCTAAACAAGAGACAATTCTTACAATCCAGTCTTTTCACCAATGCTCAAGTCTCATATCAATCAAATTGAGTGTGTCAAACTACCTACTTTGGAAGTCGCAAGTTCTACCACTAGTGAGGAGTTTGGGAATTGAAGACCACCTCAAGGAAAGCAAGAAACCAGAGGAGCTCTTGACTGACAAAGATGGAGAAACTATTCCAAATCCTCAATACAACATTTGGCTCAACAATGATGGCCTTCTAACCTCTTGGCTTCTAGGCATCATAACTGAGGATGTGTTGGCCACAATTGAAGGAACAGATTCAGCATACCAAATGTGGAAATCTCTAGAAGAACAACTTCTCACCGTTACAAAAGAAAACGAAATTCACCTCAATGAAGCCATCCTGAGTCTGAAAAAGGGAAGTCTCTCTTTAGATGAGTATTTGAAGAAAACTAAATCGTTTTGTGATCAACTTGCAGCTATGAAGAAACCAGTGGATGATCTCACAAAGGTGTTTCATGTTGCTAGAGGACTAGGAGCTAAATACCATGGATTTAAAACAGCCATGTTGTCCAAAGCACCATATCAAACCTATAATGAGTTCATCCTAGCTCTTAAAGCACATGAGGAAGAGGCAGAGGCAGAGGAAGAAATTTCTCTTCTAGAGGAAGAGGTTTCCCTTAAGGCAGACAAATCGCTCCTGAAAATGCAGGTTACACAAGTCCTCATAAAACTAGCTCTTTCCAAGGGAGACACAAAGACTCAGGGGCGGATTCTTGCTGAAGGAGCAAAGAAAGGAGGGTTGTATGCACTTGATGAGCAGAAACAAAGACAAGAAGTCATGGTGAACAAAATGATAGTAGTACAAGAACATCACATCCAGAAGGCTTATGCCAAATTCCATCGGGTCATCACATGGTTACAAGAAGGAAATTAG

Coding sequence (CDS)

ATGGCTAAACAAGAGACAATTCTTACAATCCAGTCTTTTCACCAATGCTCAAGTCTCATATCAATCAAATTGAGTGTGTCAAACTACCTACTTTGGAAGTCGCAAGTTCTACCACTAGTGAGGAGTTTGGGAATTGAAGACCACCTCAAGGAAAGCAAGAAACCAGAGGAGCTCTTGACTGACAAAGATGGAGAAACTATTCCAAATCCTCAATACAACATTTGGCTCAACAATGATGGCCTTCTAACCTCTTGGCTTCTAGGCATCATAACTGAGGATGTGTTGGCCACAATTGAAGGAACAGATTCAGCATACCAAATGTGGAAATCTCTAGAAGAACAACTTCTCACCGTTACAAAAGAAAACGAAATTCACCTCAATGAAGCCATCCTGAGTCTGAAAAAGGGAAGTCTCTCTTTAGATGAGTATTTGAAGAAAACTAAATCGTTTTGTGATCAACTTGCAGCTATGAAGAAACCAGTGGATGATCTCACAAAGGTGTTTCATGTTGCTAGAGGACTAGGAGCTAAATACCATGGATTTAAAACAGCCATGTTGTCCAAAGCACCATATCAAACCTATAATGAGTTCATCCTAGCTCTTAAAGCACATGAGGAAGAGGCAGAGGCAGAGGAAGAAATTTCTCTTCTAGAGGAAGAGGTTTCCCTTAAGGCAGACAAATCGCTCCTGAAAATGCAGGTTACACAAGTCCTCATAAAACTAGCTCTTTCCAAGGGAGACACAAAGACTCAGGGGCGGATTCTTGCTGAAGGAGCAAAGAAAGGAGGGTTGTATGCACTTGATGAGCAGAAACAAAGACAAGAAGTCATGGTGAACAAAATGATAGTAGTACAAGAACATCACATCCAGAAGGCTTATGCCAAATTCCATCGGGTCATCACATGGTTACAAGAAGGAAATTAG

Protein sequence

MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTKENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYQTYNEFILALKAHEEEAEAEEEISLLEEEVSLKADKSLLKMQVTQVLIKLALSKGDTKTQGRILAEGAKKGGLYALDEQKQRQEVMVNKMIVVQEHHIQKAYAKFHRVITWLQEGN

Homology

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BLAST of Moc04g24990 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])

HSP 1 Score: 287.0 bits (733), Expect = 2.0e-73
Identity = 142/213 (66.67%), Postives = 174/213 (81.69%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +LT+QSFHQCSSLIS+KL+ SNYLLWKSQVLPL+R+LG+E HL E     +   
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
            K+GE+    Q   W+NNDGLLTSWLLGII EDVL  +EGT++A ++W SLEE LLT+TK
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           ENEIHLNEA+L+LKKGSLS+DEY++K K+ CD+L AMKKP+DDLTKVFH+ARGLG KY  
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKD 180

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+TAMLSKAPY +YN+F+LALKAH++    EEE
Sbjct: 181 FRTAMLSKAPYPSYNQFVLALKAHDQFLTDEEE 213

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BLAST of Moc04g24990 vs. NCBI nr
Match: RVW19921.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 232.3 bits (591), Expect = 5.8e-57
Identity = 114/213 (53.52%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E   
Sbjct: 15  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++TE+V+  ++GT++AY +W SL E+LL +TK
Sbjct: 75  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 134

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  
Sbjct: 135 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 194

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 195 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENE 227

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BLAST of Moc04g24990 vs. NCBI nr
Match: RVW43526.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-56
Identity = 113/213 (53.05%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   +   
Sbjct: 46  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASKETM 105

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++TE+V+  ++GT++AY +W SL E+LL +TK
Sbjct: 106 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 165

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  
Sbjct: 166 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 225

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 226 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENE 258

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BLAST of Moc04g24990 vs. NCBI nr
Match: RVW93768.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 230.3 bits (586), Expect = 2.2e-56
Identity = 113/213 (53.05%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E   
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++T++V+  ++GT++AY +W SL E+LL +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 180

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMIENE 213

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BLAST of Moc04g24990 vs. NCBI nr
Match: CAN74381.1 (hypothetical protein VITISV_007944 [Vitis vinifera])

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-55
Identity = 112/213 (52.58%), Postives = 153/213 (71.83%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++       
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASXETM 60

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++TE+V+  ++GT++AY +W SL E+LL +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL K F +A+GLG KY  
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKXFQLAQGLGTKYMD 180

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENE 213

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BLAST of Moc04g24990 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.9e-09
Identity = 53/214 (24.77%), Postives = 89/214 (41.59%), Query Frame = 0


Query: 4   QETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKD 63
           +E +L   S    +     KL+ +NYL+W  QV  L     +   L  S          D
Sbjct: 6   EELVLNNTSILNVNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTD 65

Query: 64  GETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTKENE 123
                NP Y  W   D L+ S +LG I+  V   +    +A Q+W++L +     +  + 
Sbjct: 66  AAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHV 125

Query: 124 IHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKT 183
             L   +    KG+ ++D+Y++   +  DQLA + KP+D   +V  V   L  +Y     
Sbjct: 126 TQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVID 185

Query: 184 AMLSKAPYQTYNEFILALKAHEEEAEAEEEISLL 218
            + +K    T  E    L  HE +  A    +++
Sbjct: 186 QIAAKDTPPTLTEIHERLLNHESKILAVSSATVI 219

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BLAST of Moc04g24990 vs. ExPASy TrEMBL
Match: A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 9.6e-74
Identity = 142/213 (66.67%), Postives = 174/213 (81.69%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +LT+QSFHQCSSLIS+KL+ SNYLLWKSQVLPL+R+LG+E HL E     +   
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
            K+GE+    Q   W+NNDGLLTSWLLGII EDVL  +EGT++A ++W SLEE LLT+TK
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           ENEIHLNEA+L+LKKGSLS+DEY++K K+ CD+L AMKKP+DDLTKVFH+ARGLG KY  
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKD 180

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+TAMLSKAPY +YN+F+LALKAH++    EEE
Sbjct: 181 FRTAMLSKAPYPSYNQFVLALKAHDQFLTDEEE 213

[Close]

BLAST of Moc04g24990 vs. ExPASy TrEMBL
Match: A0A438C9J9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1040 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-57
Identity = 114/213 (53.52%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E   
Sbjct: 15  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++TE+V+  ++GT++AY +W SL E+LL +TK
Sbjct: 75  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 134

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  
Sbjct: 135 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 194

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 195 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENE 227

[Close]

BLAST of Moc04g24990 vs. ExPASy TrEMBL
Match: A0A438E6Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1575 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 8.1e-57
Identity = 113/213 (53.05%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   +   
Sbjct: 46  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASKETM 105

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++TE+V+  ++GT++AY +W SL E+LL +TK
Sbjct: 106 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 165

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  
Sbjct: 166 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 225

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 226 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENE 258

[Close]

BLAST of Moc04g24990 vs. ExPASy TrEMBL
Match: A0A438IAM2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3180 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 113/213 (53.05%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++   E   
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++T++V+  ++GT++AY +W SL E+LL +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL KVF +A+GLG KY  
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 180

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMIENE 213

[Close]

BLAST of Moc04g24990 vs. ExPASy TrEMBL
Match: A5BC00 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007944 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.3e-56
Identity = 112/213 (52.58%), Postives = 153/213 (71.83%), Query Frame = 0


Query: 1   MAKQETILTIQSFHQCSSLISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLT 60
           MA  E +L+IQ+FHQCSSL+SIKL++SN LLW+SQVLPLVRSLG+  HL E++       
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASXETM 60

Query: 61  DKDGETIPNPQYNIWLNNDGLLTSWLLGIITEDVLATIEGTDSAYQMWKSLEEQLLTVTK 120
             + +   +     W +NDGLLTSWLLG++TE+V+  ++GT++AY +W SL E+LL +TK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 121 ENEIHLNEAILSLKKGSLSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHG 180
           E E+ L   +  +KKG+ SLDEYL++ K  CD LAA++KPV DL K F +A+GLG KY  
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKXFQLAQGLGTKYMD 180

Query: 181 FKTAMLSKAPYQTYNEFILALKAHEEEAEAEEE 214
           F+ AMLSK PY +YN+F+LAL+ HE+    E E
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENE 213

[Close]

BLAST of Moc04g24990 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-12
Identity = 52/199 (26.13%), Postives = 83/199 (41.71%), Query Frame = 0


Query: 20  ISIKLSVSNYLLWKSQVLPLVRSLGIEDHLKESKKPEELLTDKDGETIPNPQ-YNIWLNN 79
           +++ L+  NY +W+     L  S G+  H+             DG + P P     W   
Sbjct: 24  VTLDLNKLNYDVWRELFETLCLSFGVLGHI-------------DGSSTPTPMTEKRWKER 83

Query: 80  DGLLTSWLLGIITEDVLATIEGTD-SAYQMWKSLEEQLLTVTKENEIHLNEAILSLKKGS 139
           DGL+  W+ G IT+ +L TI     +A  +W SLE       +   +     + +     
Sbjct: 84  DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 143

Query: 140 LSLDEYLKKTKSFCDQLAAMKKPVDDLTKVFHVARGLGAKYHGFKTAMLSKAPYQTYNEF 199
           LS+ EY +K KS  D L  +  P+ D   V H+  GL  KY      +  K+P+ ++ E 
Sbjct: 144 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 203

Query: 200 ILALKAHEEEAEAEEEISL 217
              L   E     + + SL
Sbjct: 204 RSMLLMEESRLSNKSKSSL 209

The following BLAST results are available for this feature:

BLAST of Moc04g24990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154021.1	2.0e-73	66.67	uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha...	[more]
RVW19921.1	5.8e-57	53.52	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW43526.1	1.7e-56	53.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW93768.1	2.2e-56	53.05	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN74381.1	1.1e-55	52.58	hypothetical protein VITISV_007944 [Vitis vinifera]	[more]

BLAST of Moc04g24990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	7.9e-09	24.77	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc04g24990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMG5	9.6e-74	66.67	uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A438C9J9	2.8e-57	53.52	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438E6Z5	8.1e-57	53.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438IAM2	1.1e-56	53.05	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5BC00	5.3e-56	52.58	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007944 PE=4 SV=1	[more]

BLAST of Moc04g24990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	2.7e-12	26.13	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 194..227
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 75..208 e-value: 9.7E-16 score: 57.8
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 14..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24990.1	Moc04g24990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane