Moc04g24910 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24910
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr4: 18046521 .. 18046982 (-)
RNA-Seq Expression	Moc04g24910
Synteny	Moc04g24910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATTCTGGTGCCACCCACAATTTCATGATAGAAACCGAAGCACGTCGGCTGAACTTGCGATGGGATAAAGACCCAGGGAAGATGAAAGCGGTCAACTCGGCTGCTCTCCCCATCATGGGAGTTGCAAAAAGAGCCTCAGTAAAGCTAGGGACATGGAGTGGACTGGTCGACTTTGTGATGGTGCGGATGGACGACTTCGACATAGTATTGGGGATGGAATTCCTGCTGGAACACAAAGTCATCCTCATGCCCCTTGCTAAGTGCCTGGTTGTAACGGGTTCCGATCCCACAGTTGTTCAGACAAGCATCAAACAACCAAGCGGAGTGAAGATGATATCAGCACTACAGCTAAAGAAAGGTCTCGCCCGTGACGAGCCGACCTTCATGGCCATTCCTGTTGCGGAAGACAGAAATTCTGAAGAGCCAGTTCCCAGAGAAATCCAGCGAGTCTTGTAG

mRNA sequence

ATGGTAGATTCTGGTGCCACCCACAATTTCATGATAGAAACCGAAGCACGTCGGCTGAACTTGCGATGGGATAAAGACCCAGGGAAGATGAAAGCGGTCAACTCGGCTGCTCTCCCCATCATGGGAGTTGCAAAAAGAGCCTCAGTAAAGCTAGGGACATGGAGTGGACTGGTCGACTTTGTGATGGTGCGGATGGACGACTTCGACATAGTATTGGGGATGGAATTCCTGCTGGAACACAAAGTCATCCTCATGCCCCTTGCTAAGTGCCTGGTTGTAACGGGTTCCGATCCCACAGTTGTTCAGACAAGCATCAAACAACCAAGCGGAGTGAAGATGATATCAGCACTACAGCTAAAGAAAGGTCTCGCCCGTGACGAGCCGACCTTCATGGCCATTCCTGTTGCGGAAGACAGAAATTCTGAAGAGCCAGTTCCCAGAGAAATCCAGCGAGTCTTGTAG

Coding sequence (CDS)

ATGGTAGATTCTGGTGCCACCCACAATTTCATGATAGAAACCGAAGCACGTCGGCTGAACTTGCGATGGGATAAAGACCCAGGGAAGATGAAAGCGGTCAACTCGGCTGCTCTCCCCATCATGGGAGTTGCAAAAAGAGCCTCAGTAAAGCTAGGGACATGGAGTGGACTGGTCGACTTTGTGATGGTGCGGATGGACGACTTCGACATAGTATTGGGGATGGAATTCCTGCTGGAACACAAAGTCATCCTCATGCCCCTTGCTAAGTGCCTGGTTGTAACGGGTTCCGATCCCACAGTTGTTCAGACAAGCATCAAACAACCAAGCGGAGTGAAGATGATATCAGCACTACAGCTAAAGAAAGGTCTCGCCCGTGACGAGCCGACCTTCATGGCCATTCCTGTTGCGGAAGACAGAAATTCTGAAGAGCCAGTTCCCAGAGAAATCCAGCGAGTCTTGTAG

Protein sequence

MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDFVMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLKKGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL

Homology

[Close]

BLAST of Moc04g24910 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNFM ETEARRLNL WDKDPGKMKAVNSAALPIMGVAKR SVKLGTWSGLVDF
Sbjct: 441 MVDSGATHNFMTETEARRLNLXWDKDPGKMKAVNSAALPIMGVAKRVSVKLGTWSGLVDF 500

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+VRMDDFD+VLG++FLLEHKVI MPLAKCLVVT SDP VVQTSIKQPSGVKMISALQLK
Sbjct: 501 VIVRMDDFDVVLGIKFLLEHKVIPMPLAKCLVVTSSDPIVVQTSIKQPSGVKMISALQLK 560

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KG+A+DEPTFMAIPVAE RNSEE VPREIQRVL
Sbjct: 561 KGIAQDEPTFMAIPVAEGRNSEELVPREIQRVL 593

[Close]

BLAST of Moc04g24910 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 477 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 536

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 537 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 596

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 597 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 629

[Close]

BLAST of Moc04g24910 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 481 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 540

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 541 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 600

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 601 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

[Close]

BLAST of Moc04g24910 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 481 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 540

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 541 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 600

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 601 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

[Close]

BLAST of Moc04g24910 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 481 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 540

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 541 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 600

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 601 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

[Close]

BLAST of Moc04g24910 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.3e-70
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNFM ETEARRLNL WDKDPGKMKAVNSAALPIMGVAKR SVKLGTWSGLVDF
Sbjct: 441 MVDSGATHNFMTETEARRLNLXWDKDPGKMKAVNSAALPIMGVAKRVSVKLGTWSGLVDF 500

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+VRMDDFD+VLG++FLLEHKVI MPLAKCLVVT SDP VVQTSIKQPSGVKMISALQLK
Sbjct: 501 VIVRMDDFDVVLGIKFLLEHKVIPMPLAKCLVVTSSDPIVVQTSIKQPSGVKMISALQLK 560

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KG+A+DEPTFMAIPVAE RNSEE VPREIQRVL
Sbjct: 561 KGIAQDEPTFMAIPVAEGRNSEELVPREIQRVL 593

[Close]

BLAST of Moc04g24910 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 481 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 540

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 541 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 600

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 601 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

[Close]

BLAST of Moc04g24910 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 481 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 540

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 541 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 600

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 601 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

[Close]

BLAST of Moc04g24910 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 481 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 540

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 541 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 600

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 601 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

[Close]

BLAST of Moc04g24910 vs. ExPASy TrEMBL
Match: A0A5D3B7E7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00360 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 113/153 (73.86%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MVDSGATHNFMIETEARRLNLRWDKDPGKMKAVNSAALPIMGVAKRASVKLGTWSGLVDF 60
           MVDSGATHNF+ E EA+RLNLRW+KD G+MKAVNSAALPI+G+ KR  ++LG WSGLVDF
Sbjct: 481 MVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIGLVKRTMIRLGGWSGLVDF 540

Query: 61  VMVRMDDFDIVLGMEFLLEHKVILMPLAKCLVVTGSDPTVVQTSIKQPSGVKMISALQLK 120
           V+V+MDDFD+VLGMEFLLEH+VI MPLAKCLV+TG  P+VVQT ++QP G+KMISA+QLK
Sbjct: 541 VVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQPDGLKMISAMQLK 600

Query: 121 KGLARDEPTFMAIPVAEDRNSEEPVPREIQRVL 154
           KGL+RDEPTFMAIP+    NS E VP+EI RVL
Sbjct: 601 KGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

The following BLAST results are available for this feature:

BLAST of Moc04g24910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	1.9e-69	90.85	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
KAA0067557.1	3.4e-58	73.86	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	3.4e-58	73.86	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	3.4e-58	73.86	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	3.4e-58	73.86	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Moc04g24910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ6	9.3e-70	90.85	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3C4R1	1.6e-58	73.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	1.6e-58	73.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T0E2	1.6e-58	73.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3B7E7	1.6e-58	73.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Moc04g24910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF08284	RVP_2	coord: 2..92 e-value: 1.9E-7 score: 31.0
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 1..77 e-value: 5.33668E-15 score: 64.28
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..106 e-value: 4.8E-16 score: 60.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24910.1	Moc04g24910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0006413	translational initiation
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008270	zinc ion binding