Moc04g24850 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24850
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr4: 18000794 .. 18001381 (-)
RNA-Seq Expression	Moc04g24850
Synteny	Moc04g24850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAATGCTGCAGCGAATGGGTTGGCAGAAGCATTCAACAAGACATTATGCAACTTATTGAAGAATGTGGTCTCCAAGACAAAAAGAGACTGGCAAGAAAAGATCGGTGAAGTGTTATGGGCTTATCGAACTACTCATCGTACTCCTACAGGAGCTACGCCTTACTCTTTAGTTTACGGTGTAGAAGCTATCCTTCCATTGGAGCGAGAAATTCCATCACTAAGAATGGCAGTGCTAGAAGGTTTAACCACTGAAGATAATGCAAAATTACGCCTTCAAGAGTTAGAAGCACTTGATGAAAAGAGACTTGATGCGCATCAAACATTGGAATGCTATCAGGCTCGAATGACCAAAGCCTTCAATAAAAATGTTCGGCCTCGGTCATTTCAAGTTGGTGATATGGTACTTGCTGTTCGAAGACCTATCATCATGACGTGTCACACAGGGAATAAGTTCACACCTAAATGGGATGGACCCTACATCATCAATGAAGTTTACACAAATGGAGCATATAAGATCGTTGATAAAGATGGATTGAGAATTGGTCCGATTAACGGCAAATTTCTTAAAAGATTTTATGCGTGA

mRNA sequence

ATGTATAATGCTGCAGCGAATGGGTTGGCAGAAGCATTCAACAAGACATTATGCAACTTATTGAAGAATGTGGTCTCCAAGACAAAAAGAGACTGGCAAGAAAAGATCGGTGAAGTGTTATGGGCTTATCGAACTACTCATCGTACTCCTACAGGAGCTACGCCTTACTCTTTAGTTTACGGTGTAGAAGCTATCCTTCCATTGGAGCGAGAAATTCCATCACTAAGAATGGCAGTGCTAGAAGGTTTAACCACTGAAGATAATGCAAAATTACGCCTTCAAGAGTTAGAAGCACTTGATGAAAAGAGACTTGATGCGCATCAAACATTGGAATGCTATCAGGCTCGAATGACCAAAGCCTTCAATAAAAATGTTCGGCCTCGGTCATTTCAAGTTGGTGATATGGTACTTGCTGTTCGAAGACCTATCATCATGACGTGTCACACAGGGAATAAGTTCACACCTAAATGGGATGGACCCTACATCATCAATGAAGTTTACACAAATGGAGCATATAAGATCGTTGATAAAGATGGATTGAGAATTGGTCCGATTAACGGCAAATTTCTTAAAAGATTTTATGCGTGA

Coding sequence (CDS)

ATGTATAATGCTGCAGCGAATGGGTTGGCAGAAGCATTCAACAAGACATTATGCAACTTATTGAAGAATGTGGTCTCCAAGACAAAAAGAGACTGGCAAGAAAAGATCGGTGAAGTGTTATGGGCTTATCGAACTACTCATCGTACTCCTACAGGAGCTACGCCTTACTCTTTAGTTTACGGTGTAGAAGCTATCCTTCCATTGGAGCGAGAAATTCCATCACTAAGAATGGCAGTGCTAGAAGGTTTAACCACTGAAGATAATGCAAAATTACGCCTTCAAGAGTTAGAAGCACTTGATGAAAAGAGACTTGATGCGCATCAAACATTGGAATGCTATCAGGCTCGAATGACCAAAGCCTTCAATAAAAATGTTCGGCCTCGGTCATTTCAAGTTGGTGATATGGTACTTGCTGTTCGAAGACCTATCATCATGACGTGTCACACAGGGAATAAGTTCACACCTAAATGGGATGGACCCTACATCATCAATGAAGTTTACACAAATGGAGCATATAAGATCGTTGATAAAGATGGATTGAGAATTGGTCCGATTAACGGCAAATTTCTTAAAAGATTTTATGCGTGA

Protein sequence

MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVYGVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKAFNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGLRIGPINGKFLKRFYA

Homology

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BLAST of Moc04g24850 vs. NCBI nr
Match: XP_022151473.1 (uncharacterized protein LOC111019405 [Momordica charantia])

HSP 1 Score: 364.8 bits (935), Expect = 4.7e-97
Identity = 181/195 (92.82%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 1   MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
           MYNAAANGLAEAFNKTLCNLLK VVSKTKRDWQ+KIGEVLWAYRTT RTPT  TPYSLVY
Sbjct: 755 MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQKKIGEVLWAYRTTDRTPTRVTPYSLVY 814

Query: 61  GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
           GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDA QTLECYQAR+TKA
Sbjct: 815 GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAQQTLECYQARITKA 874

Query: 121 FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
           FNKNVRPRSFQVGDMVL VRRPII T HT NKFTPKWDGPYII EVYTNGAY IVDK GL
Sbjct: 875 FNKNVRPRSFQVGDMVLVVRRPIITTRHTRNKFTPKWDGPYIIKEVYTNGAYMIVDKYGL 934

Query: 181 RIGPINGKFLKRFYA 196
           RIGPINGKFLKRFYA
Sbjct: 935 RIGPINGKFLKRFYA 949

[Close]

BLAST of Moc04g24850 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 173/195 (88.72%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1    MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
            MYNAAANGLAEAFNKTLCNLLK +VSK+KRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 2237 MYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 2296

Query: 61   GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
            GVEA+LPLEREIPSLRMAV EGLTTEDN KLRLQELEALDEKRL+A Q LECYQARM+KA
Sbjct: 2297 GVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKA 2356

Query: 121  FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
            F+K+V+PRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EVYTNGAYKIVD+DGL
Sbjct: 2357 FDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGL 2416

Query: 181  RIGPINGKFLKRFYA 196
            RIGPINGKFLK+FYA
Sbjct: 2417 RIGPINGKFLKKFYA 2431

[Close]

BLAST of Moc04g24850 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 173/195 (88.72%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1    MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
            MYNAAANGLAEAFNKTLCNLLK +VSK+KRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 2237 MYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 2296

Query: 61   GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
            GVEA+LPLEREIPSLRMAV EGLTTEDN KLRLQELEALDEKRL+A Q LECYQARM+KA
Sbjct: 2297 GVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKA 2356

Query: 121  FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
            F+K+V+PRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EVYTNGAYKIVD+DGL
Sbjct: 2357 FDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGL 2416

Query: 181  RIGPINGKFLKRFYA 196
            RIGPINGKFLK+FYA
Sbjct: 2417 RIGPINGKFLKKFYA 2431

[Close]

BLAST of Moc04g24850 vs. NCBI nr
Match: XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 173/195 (88.72%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1    MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
            MYNAAANGLAEAFNKTLCNLLK +VSK+KRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 1612 MYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 1671

Query: 61   GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
            GVEA+LPLEREIPSLRMAV EGLTTEDN KLRLQELEALDEKRL+A Q LECYQARM+KA
Sbjct: 1672 GVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKA 1731

Query: 121  FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
            F+K+V+PRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EVYTNGAYKIVD+DGL
Sbjct: 1732 FDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGL 1791

Query: 181  RIGPINGKFLKRFYA 196
            RIGPINGKFLK+FYA
Sbjct: 1792 RIGPINGKFLKKFYA 1806

[Close]

BLAST of Moc04g24850 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 362.8 bits (930), Expect = 1.8e-96
Identity = 173/195 (88.72%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1    MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
            MYNAAANGLAEAFNKTLCNLLK +VSK+KRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 2096 MYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 2155

Query: 61   GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
            GVEA+LPLEREIPSLRMAV EGLTTEDN KLRLQELEALDEKRL+A Q LECYQARM+KA
Sbjct: 2156 GVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKRLEAQQALECYQARMSKA 2215

Query: 121  FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
            F+K+V+PRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EVYTNGAYKIVD+DGL
Sbjct: 2216 FDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVYTNGAYKIVDQDGL 2275

Query: 181  RIGPINGKFLKRFYA 196
            RIGPINGKFLK+FYA
Sbjct: 2276 RIGPINGKFLKKFYA 2290

[Close]

BLAST of Moc04g24850 vs. ExPASy Swiss-Prot
Match: A4FUB7 (Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.0e-06
Identity = 47/194 (24.23%), Postives = 80/194 (41.24%), Query Frame = 0


Query: 10  AEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVYGVEAILPLE 69
           AE+   T+   L         DW + +  V +A+  TH  PT  TPY  ++     +P  
Sbjct: 217 AESTPSTIKTFLSKHCVDYPNDWDDHLPAVSFAFNVTHLEPTKNTPYFQMFNRNPYMPES 276

Query: 70  REIPSLRMAVLEGLTTEDNAKL--RLQELEALDEKRLDAHQTLE---CYQARMTKAF--- 129
            +I       ++G  T   AK+   ++E + + E +  +   +E   C++   +K     
Sbjct: 277 SDIRE-----VDGDNTSMFAKILDAIKEADKIMENKTTSVGQMENNNCHELNKSKIIVKK 336

Query: 130 -NKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 189
             K   P   +VG  VL  R+          +F  +W GP +I+ +  NG   + D  G 
Sbjct: 337 KPKQQNPFHLKVGHEVLRQRK----NWWKDGRFRSEWVGPCVIDYITENGGAVLRDSSGA 396

Query: 190 RI-GPINGKFLKRF 194
           R+  PI    LK +
Sbjct: 397 RLKRPIKMSHLKPY 401

[Close]

BLAST of Moc04g24850 vs. ExPASy Swiss-Prot
Match: Q9NXP7 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 PE=1 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 2.9e-04
Identity = 42/189 (22.22%), Postives = 82/189 (43.39%), Query Frame = 0


Query: 19  NLLKNVVSKTKRD----WQEKIGEVLWAYRTTHRTPTGATPYSLVYGVEAILP------- 78
           N +K  +SK   D    W + +  V +A+  TH  PT  TPY  ++     +P       
Sbjct: 244 NTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLH 303

Query: 79  -LEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQAR-MTKAFNKNV 138
            ++ +  S+   +L+ +   D    ++ E +     +++ +   E  +++ + K   K +
Sbjct: 304 EVDGDNTSMFAKILDAIKEAD----KIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQL 363

Query: 139 RPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGLRI-GP 194
            P   +VG  VL  R+          +F  +W GP +I+ +  +G   + D  G+R+  P
Sbjct: 364 NPFHLKVGHEVLRQRK----NWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRP 423

[Close]

BLAST of Moc04g24850 vs. ExPASy Swiss-Prot
Match: Q5RBK0 (Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.9e-04
Identity = 42/189 (22.22%), Postives = 82/189 (43.39%), Query Frame = 0


Query: 19  NLLKNVVSKTKRD----WQEKIGEVLWAYRTTHRTPTGATPYSLVYGVEAILP------- 78
           N +K  +SK   D    W + +  V +A+  TH  PT  TPY  ++     +P       
Sbjct: 244 NTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLH 303

Query: 79  -LEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQAR-MTKAFNKNV 138
            ++ +  S+   +L+ +   D    ++ E +     +++ +   E  +++ + K   K +
Sbjct: 304 EVDGDNTSMFAKILDAIKEAD----KIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQL 363

Query: 139 RPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGLRI-GP 194
            P   +VG  VL  R+          +F  +W GP +I+ +  +G   + D  G+R+  P
Sbjct: 364 NPFHLKVGHEVLRQRK----NWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRP 423

[Close]

BLAST of Moc04g24850 vs. ExPASy Swiss-Prot
Match: Q4R6I1 (Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.4e-04
Identity = 39/174 (22.41%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 31  DWQEKIGEVLWAYRTTHRTPTGATPYSLVYGVEAILP--------LEREIPSLRMAVLEG 90
           +W + +  V +A+  TH  PT  TPY  ++     +P        ++ +  S+   +L+ 
Sbjct: 260 NWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHDVDGDNTSMFAKILDA 319

Query: 91  LTTEDN-AKLRLQELEALDEKRLDAHQTLECYQAR-MTKAFNKNVRPRSFQVGDMVLAVR 150
           +   D   + +   L  ++   LD     E  +++ + K   K + P   +VG  VL  R
Sbjct: 320 IKEADEIMENKTTSLGQMENNNLD-----ELNKSKIIVKKKPKQLNPFHLKVGHEVLRQR 379

Query: 151 RPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGLRI-GPINGKFLKRF 194
           +          +F  +W GP +I+ +  +G   + D  G+R+  PI    LK +
Sbjct: 380 K----NWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSHLKPY 424

[Close]

BLAST of Moc04g24850 vs. ExPASy TrEMBL
Match: A0A6J1DC95 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111019405 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 181/195 (92.82%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 1   MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
           MYNAAANGLAEAFNKTLCNLLK VVSKTKRDWQ+KIGEVLWAYRTT RTPT  TPYSLVY
Sbjct: 755 MYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQKKIGEVLWAYRTTDRTPTRVTPYSLVY 814

Query: 61  GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
           GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDA QTLECYQAR+TKA
Sbjct: 815 GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAQQTLECYQARITKA 874

Query: 121 FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
           FNKNVRPRSFQVGDMVL VRRPII T HT NKFTPKWDGPYII EVYTNGAY IVDK GL
Sbjct: 875 FNKNVRPRSFQVGDMVLVVRRPIITTRHTRNKFTPKWDGPYIIKEVYTNGAYMIVDKYGL 934

Query: 181 RIGPINGKFLKRFYA 196
           RIGPINGKFLKRFYA
Sbjct: 935 RIGPINGKFLKRFYA 949

[Close]

BLAST of Moc04g24850 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.6e-96
Identity = 171/195 (87.69%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1    MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
            MYNAAANGLAEAFNKTLC+LLK VVSKTKRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 2124 MYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 2183

Query: 61   GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
            GVEA+LPLEREIPSLRMA+ EGLTTEDNA+LRLQELEALDEKRL+A Q LECYQARM+KA
Sbjct: 2184 GVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLQELEALDEKRLEAQQALECYQARMSKA 2243

Query: 121  FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
            F+K VRPRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EV+TNGAYKI+D+DGL
Sbjct: 2244 FDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGL 2303

Query: 181  RIGPINGKFLKRFYA 196
            +IGPINGKFLK+FYA
Sbjct: 2304 QIGPINGKFLKKFYA 2318

[Close]

BLAST of Moc04g24850 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.6e-96
Identity = 170/195 (87.18%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1    MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
            MYNAAANGLAEAFNKTLC+LLK VVSKTKRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 2194 MYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 2253

Query: 61   GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
            GVEA+LPLEREIPSLRMA+ EGLTTEDNA+LRL+ELEALDEKRL+A Q LECYQARM+KA
Sbjct: 2254 GVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLEELEALDEKRLEAQQALECYQARMSKA 2313

Query: 121  FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
            F+K VRPRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EV+TNGAYKI+D+DGL
Sbjct: 2314 FDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGL 2373

Query: 181  RIGPINGKFLKRFYA 196
            RIGPING+FLK+FYA
Sbjct: 2374 RIGPINGRFLKKFYA 2388

[Close]

BLAST of Moc04g24850 vs. ExPASy TrEMBL
Match: A0A5A7U2B8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00950 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 170/195 (87.18%), Postives = 184/195 (94.36%), Query Frame = 0


Query: 1    MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
            MYNAAANGLAEAFNKTLC+LLK VVSKTKRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 1413 MYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 1472

Query: 61   GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
            GVE +LPLEREIPSLRMA+ EGLTTEDNA+LRLQELEALDEKRL+A Q LECYQARM+KA
Sbjct: 1473 GVEVVLPLEREIPSLRMAIQEGLTTEDNARLRLQELEALDEKRLEAQQALECYQARMSKA 1532

Query: 121  FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
            F+K V+PRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EV+TNGAYKI+D+DGL
Sbjct: 1533 FDKQVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGAYKIIDQDGL 1592

Query: 181  RIGPINGKFLKRFYA 196
            RIGPINGKFLK+FYA
Sbjct: 1593 RIGPINGKFLKKFYA 1607

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BLAST of Moc04g24850 vs. ExPASy TrEMBL
Match: A0A5A7USC8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00490 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.8e-95
Identity = 169/195 (86.67%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 1   MYNAAANGLAEAFNKTLCNLLKNVVSKTKRDWQEKIGEVLWAYRTTHRTPTGATPYSLVY 60
           MYNAAANGLAEAFNKTLC+LLK VVSKTKRDWQEKIGE LWAYRTTHRTPTG TPYSLVY
Sbjct: 391 MYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAYRTTHRTPTGVTPYSLVY 450

Query: 61  GVEAILPLEREIPSLRMAVLEGLTTEDNAKLRLQELEALDEKRLDAHQTLECYQARMTKA 120
           GVEA+LPLEREIPSLRMA+ EGLTTEDNA+LRLQELE LDEKRL+A Q LECYQARM+KA
Sbjct: 451 GVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLQELETLDEKRLEAQQALECYQARMSKA 510

Query: 121 FNKNVRPRSFQVGDMVLAVRRPIIMTCHTGNKFTPKWDGPYIINEVYTNGAYKIVDKDGL 180
           F+K VRPRSFQVGD+VLAVRRPII T HTGNKFTPKWDGPYI+ EV+TNG YKI+D+DGL
Sbjct: 511 FDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIVKEVFTNGEYKIIDQDGL 570

Query: 181 RIGPINGKFLKRFYA 196
           RIGPING+FLK+FYA
Sbjct: 571 RIGPINGRFLKKFYA 585

The following BLAST results are available for this feature:

BLAST of Moc04g24850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151473.1	4.7e-97	92.82	uncharacterized protein LOC111019405 [Momordica charantia]	[more]
XP_031739134.1	1.8e-96	88.72	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.8e-96	88.72	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737372.1	1.8e-96	88.72	uncharacterized protein LOC116402244 [Cucumis sativus]	[more]
XP_031742199.1	1.8e-96	88.72	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Moc04g24850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUB7	4.0e-06	24.23	Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=...	[more]
Q9NXP7	2.9e-04	22.22	Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 P...	[more]
Q5RBK0	2.9e-04	22.22	Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 P...	[more]
Q4R6I1	6.4e-04	22.41	Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN...	[more]

BLAST of Moc04g24850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC95	2.3e-97	92.82	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111019405 PE=4 SV=1	[more]
A0A5D3D1E5	5.6e-96	87.69	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]
A0A5A7TZU9	9.6e-96	87.18	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7U2B8	1.3e-95	87.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7USC8	4.8e-95	86.67	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00490...	[more]

BLAST of Moc04g24850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..116
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..150
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 5..150
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..112 e-value: 2.1E-17 score: 65.1
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24850.1	Moc04g24850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding