Moc04g24800 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24800
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Location	chr4: 17966358 .. 17967329 (-)
RNA-Seq Expression	Moc04g24800
Synteny	Moc04g24800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAATCAAGCTACAACAGTGAGTCTAAGTCAAATGGAGACGTAGTGAGAGTACGAGGTAAAGTGGTAAAATTTTTGCGTTCCATTATTAACACTCACTATGGTTTGTTGGATGTATTTAATGTCGTAGGTAATGAAGTTTTGGTGCATCCATCTGATGAGCAAGTGGAGGAGGCGCGTCGCCTTATTTGTAGACCACACAAGGCATGGACCGTCTCGACAACTGGAAAGCTTTCCCTAAAGCCTCTTAACATCAATGAACAAGCAACGGTTTGGATGTATGTGGTGAAGAATAGATTGATCCCCACTTCTCACAATTCCTCCATTAAGCGCAATAGGGCGATGATGGTGTACATCCTGATGAAGGGCATTGAGTTCAATTTTGGCGAACTCATAAGGAACGAGATTCGGAGTTGCTTGGAGAAAATGGTAGGTCCACTTGTTTTTTCTGGATTAATAACTGAGTTATGCTTCCAGGCAGACGTGGAGGCCGATGATGCGGATGTAGTAACGTCGAAGAGGCCAGTCACATCCCTAAGGAGAGTTTGGGGATATTCAATCGTTCGAGAGGAAGATTCTCTCATTACCGCTGCGGATCCCGAGACTGGAGGAGTGGTGACTAGGGAGTAATATGACGAGCTACAGCACAAGTACGAGCTTCTATTGGTTACTTAACATGCCACATGTGAGTTCCTAAAGAAGTTATACGGTTATGAAGCACCTTTGTTCCCCTATGAGCTTATGGCTGATCTACCTTTTTCTTCCCGACCTACCAGTGATGATTGCTTGGATGATGATAACGGTGACAAGGGGAGTATTTCTCTCTTTTTGCTTTGATATTGGATGTTTTGGATATTGATCTTGTACATTATGTTAGTTTGTTTAGGTTGCTTTTGTGTCATTAGTTTGCTTGTTAGGTTGTTTAGCATAGTTTTAGTTAGGCTAGTTGTTAGGATGTTGTGCTGTTAG

mRNA sequence

ATGTTTGAATCAAGCTACAACAGTGAGTCTAAGTCAAATGGAGACGTAGTGAGAGTACGAGGTAATGAAGTTTTGGTGCATCCATCTGATGAGCAAGTGGAGGAGGCGCGTCGCCTTATTTGTAGACCACACAAGGCATGGACCGTCTCGACAACTGGAAAGCTTTCCCTAAAGCCTCTTAACATCAATGAACAAGCAACGGTTTGGATGTATGTGGTGAAGAATAGATTGATCCCCACTTCTCACAATTCCTCCATTAAGCGCAATAGGGCGATGATGGTGTACATCCTGATGAAGGGCATTGAGTTCAATTTTGGCGAACTCATAAGGAACGAGATTCGGAGTTGCTTGGAGAAAATGGTAGGTCCACTTGTTTTTTCTGGATTAATAACTGAGTTATGCTTCCAGGCAGACGTGGAGGCCGATGATGCGGATGTAGTAACGTCGAAGAGGCCAGTCACATCCCTAAGGAGAGTTTGGGGATATTCAATCGTTCGAGAGGAAGATTCTCTCATTACCGCTGCGGATCCCGAGACTGGAGGAGTGAAGTTATACGGTTATGAAGCACCTTTGTTCCCCTATGAGCTTATGGCTGATCTACCTTTTTCTTCCCGACCTACCAGTGATGATTGCTTGGATGATGATAACGGTTGCTTTTGTGTCATTAGTTTGCTTGTTAGGTTGTTTAGCATAGTTTTAGTTAGGCTAGTTGTTAGGATGTTGTGCTGTTAG

Coding sequence (CDS)

ATGTTTGAATCAAGCTACAACAGTGAGTCTAAGTCAAATGGAGACGTAGTGAGAGTACGAGGTAATGAAGTTTTGGTGCATCCATCTGATGAGCAAGTGGAGGAGGCGCGTCGCCTTATTTGTAGACCACACAAGGCATGGACCGTCTCGACAACTGGAAAGCTTTCCCTAAAGCCTCTTAACATCAATGAACAAGCAACGGTTTGGATGTATGTGGTGAAGAATAGATTGATCCCCACTTCTCACAATTCCTCCATTAAGCGCAATAGGGCGATGATGGTGTACATCCTGATGAAGGGCATTGAGTTCAATTTTGGCGAACTCATAAGGAACGAGATTCGGAGTTGCTTGGAGAAAATGGTAGGTCCACTTGTTTTTTCTGGATTAATAACTGAGTTATGCTTCCAGGCAGACGTGGAGGCCGATGATGCGGATGTAGTAACGTCGAAGAGGCCAGTCACATCCCTAAGGAGAGTTTGGGGATATTCAATCGTTCGAGAGGAAGATTCTCTCATTACCGCTGCGGATCCCGAGACTGGAGGAGTGAAGTTATACGGTTATGAAGCACCTTTGTTCCCCTATGAGCTTATGGCTGATCTACCTTTTTCTTCCCGACCTACCAGTGATGATTGCTTGGATGATGATAACGGTTGCTTTTGTGTCATTAGTTTGCTTGTTAGGTTGTTTAGCATAGTTTTAGTTAGGCTAGTTGTTAGGATGTTGTGCTGTTAG

Protein sequence

MFESSYNSESKSNGDVVRVRGNEVLVHPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQATVWMYVVKNRLIPTSHNSSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFSGLITELCFQADVEADDADVVTSKRPVTSLRRVWGYSIVREEDSLITAADPETGGVKLYGYEAPLFPYELMADLPFSSRPTSDDCLDDDNGCFCVISLLVRLFSIVLVRLVVRMLCC

Homology

[Close]

BLAST of Moc04g24800 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 1.5e-68
Identity = 151/241 (62.66%), Postives = 169/241 (70.12%), Query Frame = 0


Query: 6    YNSESKSNGDVVRVRGNEVLVHPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQ 65
            Y + + + GD VRVRGNE+LVHPSDEQVEEARRLICRPHK WT+ST GKLSLKPL+INEQ
Sbjct: 1172 YTAINPNRGDEVRVRGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQ 1231

Query: 66   ATVWMYVVKNRLIPTSHNSSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLV 125
            ATVWMYVVKNRLIPTS++SSIKRNRAM+VYIL+KG+EFNFGELIRNEI+SC EK+ G   
Sbjct: 1232 ATVWMYVVKNRLIPTSYDSSIKRNRAMIVYILVKGVEFNFGELIRNEIQSCSEKLAG--- 1291

Query: 126  FSGLITELCFQADVEADDADVVTSKRPVTSLRRVWGYSIVREEDSLITAADPETGGV--- 185
                         VEA DA+VV  K+P  SLR+V GYSIVREEDS ITAADPET GV   
Sbjct: 1292 -------------VEAADANVVMPKKPFRSLRKVRGYSIVREEDSPITAADPETRGVVTR 1351

Query: 186  -------------------------KLYGYEAPLFPYELMADLPFSSR-PT--SDDCLDD 216
                                     K+YG EAP FP EL ADLP SSR PT  +DD   D
Sbjct: 1352 EQYDELRHKYELLLVTQRATCAFLKKIYGDEAPSFPDELAADLPSSSRLPTDSNDDESSD 1396

[Close]

BLAST of Moc04g24800 vs. NCBI nr
Match: XP_022159289.1 (uncharacterized protein LOC111025702 [Momordica charantia])

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-41
Identity = 102/178 (57.30%), Postives = 113/178 (63.48%), Query Frame = 0


Query: 68  VWMYVVKNRLIPTSHNSSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFS 127
           +W YVVKN LI TS++SSI++ R M+VYILMKGIEFNF ELIRNEI  C EKMVGPL+F 
Sbjct: 1   MWSYVVKNLLISTSYDSSIQQIRVMIVYILMKGIEFNFSELIRNEIWVCAEKMVGPLIFP 60

Query: 128 GLITELCFQADVEADDADVVTSKRPVTSLRRVWGYSIVREEDSLITAADPETGGV----- 187
             I ELC +A VEAD  DVV SK+  TS+RRV GY IVREEDS ITAADP+T GV     
Sbjct: 61  ARIMELCLKAGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDTRGVVTREQ 120

Query: 188 --------------------------KLYGYEAPLFPYELMADLPFSSRPTSDDCLDD 215
                                     KLYG  AP  P EL ADLP SSRPT DD L D
Sbjct: 121 YDEYEKLRHVYDLLFATQHATCEFLKKLYGDGAPSLPDELAADLPSSSRPTGDDSLHD 178

[Close]

BLAST of Moc04g24800 vs. NCBI nr
Match: EXB49850.1 (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-11
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 23  EVLVHPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQATVWMYVVKNRLIPTSH 82
           E++    +EQ++E  + I      W +S  G  +     +   A VW + + +RL+ ++H
Sbjct: 147 ELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTH 206

Query: 83  NSSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFSGLITELCFQADV 140
             +I RNRA+++Y ++ G   N G LI ++IR+C EK  G L F  LI+ELC Q+ V
Sbjct: 207 GKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHV 263

[Close]

BLAST of Moc04g24800 vs. NCBI nr
Match: KAA0057652.1 (hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19535.1 hypothetical protein E5676_scaffold416G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-09
Identity = 36/114 (31.58%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 24  VLVHPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQATVWMYVVKNRLIPTSHN 83
           +  +P +  +E+A + +  P   W +  TGK  L   N+N +A +W+  VKN + PT H+
Sbjct: 29  IFKNPQERDLEDALKRVAWPRTKWDIMPTGKYQLFLQNLNTEAIIWLVFVKNDIRPTRHD 88

Query: 84  SSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFSGLITELCFQA 138
           S+I     M+VY +M+ +  N  E+I   I + ++       FS LI +LC +A
Sbjct: 89  STISMEHIMLVYCIMEHLLVNIVEIISEHIIAWVKHPRRTRPFSHLIEKLCLKA 142

[Close]

BLAST of Moc04g24800 vs. NCBI nr
Match: KAE8676815.1 (hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-09
Identity = 36/121 (29.75%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 27   HPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQATVWMYVVKNRLIPTSHNSSI 86
            H  DE +E+    +C  +  W    T + S+   N+  +A +W + +K++L+PTSHN+++
Sbjct: 969  HTYDEILED----LCFENIEWNGRQTSRYSVNRENLQLRAKLWNHFLKHKLMPTSHNTTV 1028

Query: 87   KRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFSGLITELCFQADVEADDADV 146
              +R ++++ +M     + G +I  ++  CL K    LVF  LIT LC +  VE +  D 
Sbjct: 1029 SLSRLLLLHSIMVSHPIDVGRIIVQQVHDCLSKKASALVFPNLITTLCRKKKVEENAFDE 1085

Query: 147  V 148
            +
Sbjct: 1089 I 1085

[Close]

BLAST of Moc04g24800 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.3e-69
Identity = 151/241 (62.66%), Postives = 169/241 (70.12%), Query Frame = 0


Query: 6    YNSESKSNGDVVRVRGNEVLVHPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQ 65
            Y + + + GD VRVRGNE+LVHPSDEQVEEARRLICRPHK WT+ST GKLSLKPL+INEQ
Sbjct: 1172 YTAINPNRGDEVRVRGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQ 1231

Query: 66   ATVWMYVVKNRLIPTSHNSSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLV 125
            ATVWMYVVKNRLIPTS++SSIKRNRAM+VYIL+KG+EFNFGELIRNEI+SC EK+ G   
Sbjct: 1232 ATVWMYVVKNRLIPTSYDSSIKRNRAMIVYILVKGVEFNFGELIRNEIQSCSEKLAG--- 1291

Query: 126  FSGLITELCFQADVEADDADVVTSKRPVTSLRRVWGYSIVREEDSLITAADPETGGV--- 185
                         VEA DA+VV  K+P  SLR+V GYSIVREEDS ITAADPET GV   
Sbjct: 1292 -------------VEAADANVVMPKKPFRSLRKVRGYSIVREEDSPITAADPETRGVVTR 1351

Query: 186  -------------------------KLYGYEAPLFPYELMADLPFSSR-PT--SDDCLDD 216
                                     K+YG EAP FP EL ADLP SSR PT  +DD   D
Sbjct: 1352 EQYDELRHKYELLLVTQRATCAFLKKIYGDEAPSFPDELAADLPSSSRLPTDSNDDESSD 1396

[Close]

BLAST of Moc04g24800 vs. ExPASy TrEMBL
Match: A0A6J1E204 (uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025702 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 5.8e-42
Identity = 102/178 (57.30%), Postives = 113/178 (63.48%), Query Frame = 0


Query: 68  VWMYVVKNRLIPTSHNSSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFS 127
           +W YVVKN LI TS++SSI++ R M+VYILMKGIEFNF ELIRNEI  C EKMVGPL+F 
Sbjct: 1   MWSYVVKNLLISTSYDSSIQQIRVMIVYILMKGIEFNFSELIRNEIWVCAEKMVGPLIFP 60

Query: 128 GLITELCFQADVEADDADVVTSKRPVTSLRRVWGYSIVREEDSLITAADPETGGV----- 187
             I ELC +A VEAD  DVV SK+  TS+RRV GY IVREEDS ITAADP+T GV     
Sbjct: 61  ARIMELCLKAGVEADVEDVVMSKKSATSIRRVRGYLIVREEDSPITAADPDTRGVVTREQ 120

Query: 188 --------------------------KLYGYEAPLFPYELMADLPFSSRPTSDDCLDD 215
                                     KLYG  AP  P EL ADLP SSRPT DD L D
Sbjct: 121 YDEYEKLRHVYDLLFATQHATCEFLKKLYGDGAPSLPDELAADLPSSSRPTGDDSLHD 178

[Close]

BLAST of Moc04g24800 vs. ExPASy TrEMBL
Match: W9RBS1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.3e-12
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 23  EVLVHPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQATVWMYVVKNRLIPTSH 82
           E++    +EQ++E  + I      W +S  G  +     +   A VW + + +RL+ ++H
Sbjct: 147 ELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTH 206

Query: 83  NSSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFSGLITELCFQADV 140
             +I RNRA+++Y ++ G   N G LI ++IR+C EK  G L F  LI+ELC Q+ V
Sbjct: 207 GKTISRNRAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHV 263

[Close]

BLAST of Moc04g24800 vs. ExPASy TrEMBL
Match: A0A5D3D7L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00290 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.9e-10
Identity = 36/114 (31.58%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 24  VLVHPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQATVWMYVVKNRLIPTSHN 83
           +  +P +  +E+A + +  P   W +  TGK  L   N+N +A +W+  VKN + PT H+
Sbjct: 29  IFKNPQERDLEDALKRVAWPRTKWDIMPTGKYQLFLQNLNTEAIIWLVFVKNDIRPTRHD 88

Query: 84  SSIKRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFSGLITELCFQA 138
           S+I     M+VY +M+ +  N  E+I   I + ++       FS LI +LC +A
Sbjct: 89  STISMEHIMLVYCIMEHLLVNIVEIISEHIIAWVKHPRRTRPFSHLIEKLCLKA 142

[Close]

BLAST of Moc04g24800 vs. ExPASy TrEMBL
Match: A0A6A2Y697 (Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111582pilonHSYRG01273 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 36/121 (29.75%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 27   HPSDEQVEEARRLICRPHKAWTVSTTGKLSLKPLNINEQATVWMYVVKNRLIPTSHNSSI 86
            H  DE +E+    +C  +  W    T + S+   N+  +A +W + +K++L+PTSHN+++
Sbjct: 969  HTYDEILED----LCFENIEWNGRQTSRYSVNRENLQLRAKLWNHFLKHKLMPTSHNTTV 1028

Query: 87   KRNRAMMVYILMKGIEFNFGELIRNEIRSCLEKMVGPLVFSGLITELCFQADVEADDADV 146
              +R ++++ +M     + G +I  ++  CL K    LVF  LIT LC +  VE +  D 
Sbjct: 1029 SLSRLLLLHSIMVSHPIDVGRIIVQQVHDCLSKKASALVFPNLITTLCRKKKVEENAFDE 1085

Query: 147  V 148
            +
Sbjct: 1089 I 1085

The following BLAST results are available for this feature:

BLAST of Moc04g24800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154847.1	1.5e-68	62.66	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia]	[more]
XP_022159289.1	1.2e-41	57.30	uncharacterized protein LOC111025702 [Momordica charantia]	[more]
EXB49850.1	1.3e-11	34.19	hypothetical protein L484_000844 [Morus notabilis]	[more]
KAA0057652.1	1.2e-09	31.58	hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19...	[more]
KAE8676815.1	2.1e-09	29.75	hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus]	[more]

BLAST of Moc04g24800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMT3	7.3e-69	62.66	LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia...	[more]
A0A6J1E204	5.8e-42	57.30	uncharacterized protein LOC111025702 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
W9RBS1	6.3e-12	34.19	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000844 PE=4 SV=1	[more]
A0A5D3D7L3	5.9e-10	31.58	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6A2Y697	1.0e-09	29.75	Reverse transcriptase domain-containing protein OS=Hibiscus syriacus OX=106335 G...	[more]

BLAST of Moc04g24800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24800.1	Moc04g24800.1	mRNA