Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCGAAACCAAGGCAAACACTAGAAATGGATAAGGGTTTCTTAGGTTTTGCTCCAATATTTTCCTTTCCTACGACTGGATTATTGGGGCGGACCTTCGAGGTCTGAAAATGGTGGGTCGCACTTACGGGGAATGGTTAAGCTAGTTAGCAGTTTTCTAACCAAATAAATGGTGACTAATGACTATAGGAATAAGAGTTATTCCGGTGTAAGATTTAGTTGAGAACGTCTCACTTCAGTGGAGGAGTAGTTGTCTGCCCTATGGTAGCTATTGTTCTAAATCCCCGAAGCATCGTTGCAAAACAATTTTGTTAGGGTGCTTGATTACTTTTGCTAAAAGTATATTTTGTTTAAAGGATAATGTATAAAATTATATAGGTTTATTTTTATTTTCAACATGTTGACTTCCATTATTGCTCTTTTAGACGCTGAAAAACTTAATGGCGAGAGTTACAAATAGTGGAAATCATAATAGATGATCTTAGGTTCGTCTTGCAAGAAGAATGTTCTCAAGCTTCTGCGCCTAACGCCAATGTGACGGTGCGCAACGCCTATGACCACTGGATCAAGGCTAACGACAAGGCAAAGGTCTACATCTTGGCGAGCATATCAGATGTGTTTGCTAAGAAGCACGAGAACATGGTCACTGTTGGGTGTGTTGCTCTAAACTTGTAGTTTGTCTTTATGTAAAAACAAATTAATAATCAATATATTTATATTCAATCAATTTGTTGTTGAATTCAAAGCATTGCATTGTCGAAATCCAATAAACTAAACATCCAAGGTTAATATTATGTAACCGGGACAATATATATACTGGGTATATATTTGATATACCCTCGATATACAACTGGATAATATCCGGGGACTAACCTAAATTGTCTATAGTATATGGATAAGGTTGGGTATCTTATCCTGGCAACACTATGGATACGACCCGCTTTGTAAATGTTATAGACGACCCGATCTAGGTCGTTCGTGTGGAGACATGCGAGTGGAGGTATCCTATACAATGAGTTTGTATAAGACCGGACCACGAAATAATTAATCTTTAGTTGTAACACCGTTAGCTAATAGATTAATATTTCAATAGGATGACCAGGTAACTCGATCTCAATCCTGAGTGAGTTATGGACTCCTGCCTGTTAGGGCTCGTCCTTTGATTTGTATGGGTTTGAGTCGCCGACTCAATATGCCTACCATTTTGGGGACGAGATCCAATGGGGAGCTGGGAACATAACTACACAAGATGGAATTCACTCCTTGTCGACTTTAGGGTAAGTAGATGAGTGTTCTCTTAAGTGTTGACTCCGGGACTTGAACAAGGGGCCTCACCCTCTCACTCGCCCGAGAGAAACTTCTGGTTATTGGTCGGACCATAACCGGGTTGTTCATTAGAGGATCACCAGTACTTAAGGTACAAGACGTAACACAGAGGTAAAACGGTAATTTCGTTACGAACACTCGTGAAGGATTGACTTGCCATTAATGGTTGTATATCCGTGGACACGAAAATATTCTACAGTGAGAAGAGTGCAACTGCGGGACTTTAGTGGATTAACCCGTAGTTAATAAATGTTGATTAACTCAGTCAATAAGTTCGACCAATTAATCTCGTATCGTTGAAGGTTATGATATTTAGGTTCATTAGGTATCCTTACTAGCTCACAACGGTTAAAATGAGGATAAAAAATTATGAAATAATTTGAACATTTCAAATTATATAAGGGAATATATATAATGTATAGTCATACATTATATATAAGTATATATTATGAGAGAAATGTTTGAATTGGATTCATATTAAAACTATAGGCTATACAAGAGAGAGTTTTTTTTAATATGATTCAAATATATAGTTTTAATTAGACTAATAATTATTAATCAAATTTATTAATAATTAATTAAATTAATTAAATGGTTAATTAATTTAGTTTAATTAATTCTATTTAATTAATTAAATAAATAAATAAAAACCAACTCCCCCCAAAAACGTAGGGGATGGGTGATGCGGTGACGTGGGGAGTTACCCCACATCACCTTTTTGGTTAATATGCAGAAGTTGTTTTGTAGGATTCTCTTCTTCTTTAACCTACAAAACAAATAGAGAAATTTGGCTCTCTAAATTTAGACTCTCTCAATTTTCCTTCAATTGCTCCCACAAGTAAAGTTCTCGTTCCCATAGGATAGCCGCGAAGATCGGTGGTTGGTGTTGAATGGAATCATTGGAGAATTTTTGAAGAAAGTCTTCAAAAGTAAGTTTCGGTTTCCCTTGTATTTTCCTTTTCGTTTGTGGTTTTTGTTCCTAAAAATTCAAGAACAAGATCGTCGTTCCCGCTGTGGGAAGAACGTCCAATCATTTACCTCCAAGGAGATCATGGACTCGCTGCAAAGCATGTTTAGACAATGGTCCTCACAGGCTCGACATAAAGCCCTTAAGTTCATCTACACCTCCCGCATGAAGGAGGGCTCGTCAGTGCGAGAACACGTTCTCAACTTGATGGTCCACTTCAATGTGGCGAAGATGAACGGTGCGTCATAGACGAGCAGAGTCAGGTCAACTTCATTCTGGAATCTCTTCCAAAGAGTTTCCTACAATTTCGCAGCAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACAAGTCACTTATGAAAAATAAGAGACAAGGGCGCGAGGCAAACATTGCCACCTCCAAAAGGTTCCACCAAGGTTCGACCTCTGGAACTAAGTATGTGTCATCTTCTTCTGGAAGTAAGACTTTAAAGAAGAAAAAAGTTGCTGGTAAGGAGTCCAAACCTGACTATGCTACTGCCGCTGCCAAGAAAGGCAGGACCAATGTTGCAGACAAGGGAAAGTGTTTCCACTGCAACATTGACTGGCATTGGAAATGCAACCACCCAAAATACCTGGTCGAAAAGAAGAAAGCCAATGAAGGTAAATACGATTGA
mRNA sequence
ATGAAACCGAAACCAAGGCAAACACTAGAAATGGATAAGGGTTTCTTAGGTTTTGCTCCAATATTTTCCTTTCCTACGACTGGATTATTGGGGCGGACCTTCGAGTTACAAATAGTGGAAATCATAATAGATGATCTTAGGTTCGTCTTGCAAGAAGAATGTTCTCAAGCTTCTGCGCCTAACGCCAATGTGACGGTGCGCAACGCCTATGACCACTGGATCAAGGCTAACGACAAGGCAAAGGTCTACATCTTGGCGAGCATATCAGATGTGTTTGCTAAGAAGCACGAGAACATGGGCTCGTCCTTTGATTTGTATGGGTTTGAGTCGCCGACTCAATATGCCTACCATTTTGGGGACGAGATCCAATGGGGAGCTGGGAACATAACTACACAAGATGGAATTCACTCCTTGTCGACTTTAGGTGCGAGAACACGTTCTCAACTTGATGGTCCACTTCAATGTGGCGAAGATGAACGGTGCGTCATAGACGAGCAGAGTCAGGTCAACTTCATTCTGGAATCTCTTCCAAAGAGTTTCCTACAATTTCGCAGCAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACAAGTCACTTATGAAAAATAAGAGACAAGGGCGCGAGGCAAACATTGCCACCTCCAAAAGGTTCCACCAAGGTTCGACCTCTGGAACTAAGTATGTGTCATCTTCTTCTGGAAGTAAGACTTTAAAGAAGAAAAAAGTTGCTGGTAAGGAGTCCAAACCTGACTATGCTACTGCCGCTGCCAAGAAAGGCAGGACCAATGTTGCAGACAAGGGAAAGTGTTTCCACTGCAACATTGACTGGCATTGGAAATGCAACCACCCAAAATACCTGGTCGAAAAGAAGAAAGCCAATGAAGGTAAATACGATTGA
Coding sequence (CDS)
ATGAAACCGAAACCAAGGCAAACACTAGAAATGGATAAGGGTTTCTTAGGTTTTGCTCCAATATTTTCCTTTCCTACGACTGGATTATTGGGGCGGACCTTCGAGTTACAAATAGTGGAAATCATAATAGATGATCTTAGGTTCGTCTTGCAAGAAGAATGTTCTCAAGCTTCTGCGCCTAACGCCAATGTGACGGTGCGCAACGCCTATGACCACTGGATCAAGGCTAACGACAAGGCAAAGGTCTACATCTTGGCGAGCATATCAGATGTGTTTGCTAAGAAGCACGAGAACATGGGCTCGTCCTTTGATTTGTATGGGTTTGAGTCGCCGACTCAATATGCCTACCATTTTGGGGACGAGATCCAATGGGGAGCTGGGAACATAACTACACAAGATGGAATTCACTCCTTGTCGACTTTAGGTGCGAGAACACGTTCTCAACTTGATGGTCCACTTCAATGTGGCGAAGATGAACGGTGCGTCATAGACGAGCAGAGTCAGGTCAACTTCATTCTGGAATCTCTTCCAAAGAGTTTCCTACAATTTCGCAGCAATGCGGTTATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACAAGTCACTTATGAAAAATAAGAGACAAGGGCGCGAGGCAAACATTGCCACCTCCAAAAGGTTCCACCAAGGTTCGACCTCTGGAACTAAGTATGTGTCATCTTCTTCTGGAAGTAAGACTTTAAAGAAGAAAAAAGTTGCTGGTAAGGAGTCCAAACCTGACTATGCTACTGCCGCTGCCAAGAAAGGCAGGACCAATGTTGCAGACAAGGGAAAGTGTTTCCACTGCAACATTGACTGGCATTGGAAATGCAACCACCCAAAATACCTGGTCGAAAAGAAGAAAGCCAATGAAGGTAAATACGATTGA
Protein sequence
MKPKPRQTLEMDKGFLGFAPIFSFPTTGLLGRTFELQIVEIIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMGSSFDLYGFESPTQYAYHFGDEIQWGAGNITTQDGIHSLSTLGARTRSQLDGPLQCGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKRQGREANIATSKRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNVADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD
Homology
BLAST of Moc04g24700 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 236.5 bits (602), Expect = 3.1e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKTK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. NCBI nr
Match:
KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 236.5 bits (602), Expect = 3.1e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKTK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 235.7 bits (600), Expect = 5.2e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKAK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. NCBI nr
Match:
KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 235.7 bits (600), Expect = 5.2e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 29 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 88
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 89 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 148
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 149 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 208
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 209 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKAK 268
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 269 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 291
BLAST of Moc04g24700 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 235.7 bits (600), Expect = 5.2e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKAK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKTK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. ExPASy TrEMBL
Match:
A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)
HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKTK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKAK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKAK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
BLAST of Moc04g24700 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 147/275 (53.45%), Postives = 184/275 (66.91%), Query Frame = 0
Query: 41 IIIDDLRFVLQEECSQASAPNANVTVRNAYDHWIKANDKAKVYILASISDVFAKKHENMG 100
+IIDDLRFVL EEC Q A NA TVR Y+ W KAN+KA+ YILAS+S+V AKKHE+M
Sbjct: 30 LIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESML 89
Query: 101 SSFDLYGF--ESPTQYAYHFGDEIQWGAGNITTQDGI----HSLSTLGARTRSQLDGPLQ 160
++ ++ E Q +Y + N +G H L+ + ++++G
Sbjct: 90 TAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNG--- 149
Query: 161 CGEDERCVIDEQSQVNFILESLPKSFLQFRSNAVMNKLEYTLTTLLNELQTYKSLMKNKR 220
VIDE SQV+FILESLP+SFLQFRSNAVMNK+ YTLTTLLNELQT++SLMK K
Sbjct: 150 ------AVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 209
Query: 221 QGREANIATS-KRFHQGSTSGTKYVSSSSGSKTLKKKKVAGKESKPDYATAAAKKGRTNV 280
Q EAN+ATS ++FH+GSTSGTK + SSSG+K KKKK G+ +K + AAAK +
Sbjct: 210 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKAN--LAAAKTTKKAK 269
Query: 281 ADKGKCFHCNIDWHWKCNHPKYLVEKKKANEGKYD 309
A KG CFHCN + HWK N PKYL EKKKA +GKYD
Sbjct: 270 AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYD 292
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK14550.1 | 3.1e-58 | 53.45 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0035879.1 | 3.1e-58 | 53.45 | gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi... | [more] |
| KAA0044955.1 | 5.2e-58 | 53.45 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0048404.1 | 5.2e-58 | 53.45 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0054490.1 | 5.2e-58 | 53.45 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CPJ6 | 1.5e-58 | 53.45 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
| A0A5D3CSZ6 | 1.5e-58 | 53.45 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032... | [more] |
| A0A5A7SMH8 | 2.5e-58 | 53.45 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
| A0A5A7TU93 | 2.5e-58 | 53.45 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |
| A0A5A7TWB9 | 2.5e-58 | 53.45 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
