Moc04g24650 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24650
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr4: 17823740 .. 17829445 (+)
RNA-Seq Expression	Moc04g24650
Synteny	Moc04g24650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCGCCCCAACTCATCTCGCTCCCAACGGGTGCGCTGCTCTGCTTTTTGTGTGGTACACTTGTTGGGGTTTCAGTGCCGGAGATGATGAGCTTCTTTTAGACGTAGGTCAGCTCCTTGCCACACAAATAGTAAAGCCATATAACGAGTTCCCGGGTTGGTACTATATATTGGCTCGGAACCAGTTCTGTAAAATAGTCCACACTCCCTCAGCCAACAAACGCTAAAGGGATAGATGGTTCCTCGTCTTGGGGGACCGGCTCGCTATTAAGGATTGAGAGCCAAACTGCTAAGTCCCTACTGAGTTTGGAGAAGTAGGTGAGCTTCGCTATAGGTCCTCACCTTGTTTTAAGATAGGATCAGCTACTTTATCTTCTAGTCGAGCTGACTAGTTGCTTCTTTTGTCTGCAGCTCTCCCAAGGCCAGCTCCCCGACAGCGAATACTCGTGGGGGGTGCACGACCTAGTGATAGACCTCGACAAGATTTGGTTCGAAGGGGTGCTTGACGATGTGAACCTCCATCAATGTAGTCTAAAATTGTTTTCCTCGCTCAACAAGAAATGCCATGCTGAGGTGCCCACTCTTGGTGAGGCAACTTCAAAGCATGGAAAATCCGTAAGTGTGCATAACTCGGCCTCTTGTGGCTTGGAAGGTTCATCTCATCCTTTTCAAGCCAACCCACTACAGACTATACTAGCCATTCACTCCTCTTCCTAAAGGAAGGGTCAGTCCTCTTCCAACCACTAGGGGAAGAGGTCGGATGAGGCGTCATCTCGATCTCTCCTCGAGCCCATCAATATTTCGTCAGAGGATGGGATACGACCAACTATCATTCCCAAGATGGACTTCAGTTACTCATTCAAGCTCAACTTCATGGAGGAATCAATACGTGATGCAGCTCTCAAGGCTTACAAGAATAGCTCGGAATGGGTGCTGAGTTTGAACGAAGGGGCCTTCCTGGAAAAACTTGGTGACTATGTTCAAAGCCTCATTGACCAACTAGCTCAACTACATTTCTCAGCTTGCCACACTGGGGCCGTCATTAGCCCATAGCCGATTGCGCTGAAGGTTAGCTTCACACTCGAGTGTGAGGCTACAAGAACGATCTAGGAGCTAAAGGCTGAGCTGGAGAAGGTTCACGCCGAGAATGATGAACTCCATAAATCAACTTCTTCACTCGAGAACCTCTTAAACCAGGCTCGGCTTGACGTGAGGGCAACTGAGACGAGAGCTAAGTGTTGAGTTTTATGTCCTAAGCTCATGTATTTGTATTTAATGAACAATTTATTTATTCAATAAATAGTTATTTTTTAGTTCTTTGCATTACTTGTATTCAAATAAAACTAAGATCCAAGGGTATTTAATGTAACTGGAATATGTATATTTGATATACAGTATATAATTAATATACCCGATATAAACTATATATTGTTGATATACAGGGAGATAATATTCTAGTAATAACCTAAATGGTCTATAGTACATGGATAAAGTTAGGTGTCTTATCTTGGTAACACTATGGATACGACTTGCTTTTTAATAGTTACAAACGACTTTATCTAGGTCGTTCATGTGGCGGTATCTTATACAATGAGTTTTTATATGACCGGACTGTGAAATATAATTAATCTTTAGTTATAACACCGTAAACTAATTAGATTAATATTTCATAGTGACCATGTAACTCGGTCTTAATCCTGAGCGAGTTATGGCCTGCCTATTAAGGATTGTCTTTTGATTTGTATGGGTGAGAGTCGTCCGTGTTGCCGACTTAATAATCCTACCATCTTGGGGACGAAACCGAATAGGGAGCTGGGAACATAACTACGCGAAATAGAATTCACTCCTTTTTTATCAATCAAACCTCTTCCCAAACTATACAAGCTTCTTTCAAAGCATACAACTTTTTGGATTTAGATGATGATATCTATACATATGGATCTTATATATATAGTACAATGAAGTACCACATGAGTGGATATATAGGAATCCAAATCTACTGAATCACTCATGTTATGATCTTCTACATCCTAGGTCTTCCCGTTCCTTCATCTAGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTACGGGTAACGTAGAAGACATCTCTATTTTCCCTCTCAAGAATTCTTCGAATTACCCCCTTCCTGATTCTAGGGGAAGTAGATGAGTGTTTCCCTTAAGTGCTGACTCTGGGACTTGAACAAGGGGCCCCACCCTCTCGCTGGCCCAAAAGAGACTTATGTTTATTGGTCGGACCATTAACAGGTTGTTCATTAGAGAATGAGTGGTACTTAAGGTGCAAGATGTAACTCAAAGGTTAAATGGTAATTTGACCCAACTGCAGTTACGATACGAACACTCGCAAATGATCGACTTACTGTTAATGGTTATATCCAATGACGCAACGTGTTTTGCAGCGCATAATAGTGCAACTATAGGTCTTTAGTGGAATGACCTATAGTTAATGAATGTTGATTAAATTAATTAATAAGGTTTAACTATTTAATCTCGGATCATTCGAGCTTATAGCCTGCAGATCCATTAGTTCCCATTGCTAGCTCATAACGGGTAAAACGAGGAGAATTTAGAAGAATTTGAATTGTTCAAATTAATTAAGGGAATGTACATTAGTTGTATCATATACAATTAAACTATAATTTATATGGATACATTATATTATAAATAAGAGATATTTCTTGAATAATATTCAATTAAAAATTAATATGAATTAGATTCGTATTTAAACTATATGTTAAAATTAATGTTAATATGATTCACATTAAAACTGTATGAGATAAGCTCTTGAAAATGATTTATTAAATATATGATATTTAATGAAATTAAATATTATTTAATTAATTAATTAGTTTAATTAATTAATATTTAAACCATTATCATCATGGGATGACTCAAGTGGTCAATGGGGGACCATATAAATAACAAGAGGAAATGAATTCAAATCTTGGTGACCACCTAATTTTCGTTTTGAATTAACAGAATCGTTTGGTGGGTTCTCTGCATTTTGAATGTATGAGTTTTTGCATATAGGATGTTTCCGAATTGTGGTATTTAGAATTGCGTTTTTATGATTCGATAATTGTAAGGGCACGTTGTTTTTGGCATTAGTGGAATATCAAGAAAGACAGAGAAACAGGGGAAGTCAAATCAGATTCTTCAAGATATCTCCAATCTTGATGTTAAAGCGAAGTGTTTTGGCCTTTCTGACGAGGATAAGGAATTAAGGCTCTCTCTTCAGAAGGATTTGCTTAATGTTTATATCAAGGAAGAGCGAATTTTGATTCAAAGGTGTAAACTTCAATGGCTGAAGGAAGGTGACGAGAACTCCAAGTTTTTTCATCGTTGTTTAGCTGCCTGTAAAAGGAAAACATGATTACTTAGTTGACAGACAGCAATGGCCTTCCTCTCTTGAACTAGAACCAGATTGAGGCCGAAATTGTTGGTTTTTTCGAACAATTATTTACTCGAACTCCTACCCAACTTTTTTCTATCAAAGGCATAAATTGGCGCCCTATTTCTGTGAAAAATAGCTCATGGCTGGCGAGACGTTTTGATGAGGATGAAATACGGTCCGCCTTAAAAGCTCTCGGTAAGAATAAAGCTCTCGGTCCTAATGGGTATACTTCGAAATTTTTCATCCGTTTTTAGGCTCTGAAGCAAGATTTTATCCGATTCTTTGATGAATTCGATAGGAATGGCCATTTAAATTCTTGTTTGAAAGAAAAATTCATTTGCATTCTCCCCAAAAAAAAAAAAAGAAGAAGATGCTGCAAGAATTAAGGATTTTAGACCAATCAGTCTATCTACATCCATTTATAAGATCCTTACCAAGGTACTCTCTGAAAGGCTTAAGAAGGTGATATCGTCTACAGTTTCTTTTAATCAAAGTGCCTTCAGGAAGAAAAATCTTAGACCCTATTTTGATCGCTAACGAAGCAGTGTAGGACTATCATGCAAGAAAGAAGAGTGGTTGGCTGTTGAAGCTTCACTTTGAAAAGGCCTTTGACAAAGTTAATTGGAGATTCCTTGCAAACGTTGTTAATAAAAAACAGTTTGCGAAGAAATGGGGTAGCTGGATTAAAGCTGTGCGAGGGGTACTAAATAATCCATATTCATCAATGGGCGGCCTAAAGGGAGAATTCTCGCTTCTCGAGGTTTAAGGCAAGGAGACCCTCTTTCTCCTTTTATTTTTCTTCTTGTTAACGATGTTTTCAGCCGCCTTTTAGACAGCATTTATTCTAATGGCTCTTTTGAAGGTTTCTTGGTTGGTAGATAACATTTTCACCTTTCTCATCTCCAATTTGCTGACGATACTTTGGTGTTTTGTAAGGATGACGATGTTATGCTTCTCAACTTGATAAGAACCATTAAAGAATTTGAATGGCTATCGGGCTTAGCAGTAAATTGGGACGAATCAACATTGTGCGGTGTGAATATTCCAGCTTCTCGCCCTCCACCAGGTAGCGTCTTCCTTAAATTGTAAGGCTGCATCTTTTCCTCTATTGTACTTGGGTTTGCCACTAGGTGGTAATCCTAGGAGTACTGGCTTTCGGCGTCCGGTTATTGAAAAGGTGGCTAAAAAGTTGGATCGTTGGAAGCGTATAATCTTTCTCGAGGCGGTCGTTTGACTTTGTTTAACTCTGTTTTGGCTAATTTACCTATGTACAATAGGTCATTATTTCAAATGCCTCCAGTAATTTGCAAGCAAATCAAGAAAGCCATGAGGGATTTCTTTTGGGAAGGCAATTCCAAAGGACCGTTGAAGCATTTAATTAATTGGAAGATTACTTCCATGAACATTGAAGATGGCGGGTTGGGTATTGGTGGTCTTATGAGACGTAATAACTCTCTCCTTGCTAAATAGGGCTGGCAGTTTGGTAATGATCCTCTTTCTCTTTGGAGGAAGGTAGTGGAGAGTATCCACGGTTCAGATTCTCCTGCCTGGTTCACCTCTCCTAGTTTGCCCATTTGCAAGCGCTGACCATGGATCAACATTTATAAACAGTGGCGTAAGGTTGAATCTTTCGTCTCATTCAGACTTGGTTGTGATAGCAAAGTTCTATTTTGGCACTCCCTTTGGGTTACCAATAATCCACTAAATGTTAGGTTTCCTAATATCTTTAAACTCTCTCCTCTCCCCCTCGACAAAGTATCATATTTTTGGGATCAAAATACATGGTCATGGCAGATTGGGTCAAGAAGATCCTTGAAAGATGTTGAGTTAGTGGAATATACTAATCTACTTGCTATATTAAGCATGCTTTCGGTTAGTGCTGAGGCTAACCAAAGAATTTGGTCCCTGGAAACTTCTGGTCTGTTCTCTGTTTCATCCTTAAGCATATTGCAAAATGTTGCTCCAATGCATAAAGATCTGTTTGTTGCTTTATGGAAATCAAAGAGTCCAAGAAAGGTGAATGTGTTTTCTTGGATTCTTCTTCATGGGAAGCTTAATACTGCAGAAGTTATTCAGAAAAAGCTCTCTTCTTCTGCTTTACTACCGTCTATTTGTGTCCTTTGTAAAGAAAATGGGGAAGATTTGAATCATCTTTTTTCCATTGCTCCTTTGCTGTTGCTGGGTGGTTTTCTTAATTTTCTCAATTTTGTGTTGATTGGGTTTTGGATTACAAGGCAGAAGCCAATTTGA

mRNA sequence

ATGAAATTCGCCCCAACTCATCTCGCTCCCAACGGGTGCGCTGCTCTGCTTTTTGTGTGGTACACTTGTTGGGGTTTCAGTGCCGGAGATGATGAGCTTCTTTTAGACCTCTCCCAAGGCCAGCTCCCCGACAGCGAATACTCGTGGGGGGTGCACGACCTAGTGATAGACCTCGACAAGATTTGGTTCGAAGGGGTGCTTGACGATGTGAACCTCCATCAATGTAGTCTAAAATTGTTTTCCTCGCTCAACAAGAAATGCCATGCTGAGGTGCCCACTCTTGGTGAGGCAACTTCAAAGCATGGAAAATCCGGGAAGAGGTCGGATGAGGCGTCATCTCGATCTCTCCTCGAGCCCATCAATATTTCGTCAGAGGATGGGATACGACCAACTATCATTCCCAAGATGGACTTCAGTTACTCATTCAAGCTCAACTTCATGGAGGAATCAATACGTGATGCAGCTCTCAAGGCTTACAAGAATAGCTCGGAATGGGTGCTGAGTTTGAACGAAGGGGCCTTCCTGGAAAAACTTGGTGACTATGAGCTAAAGGCTGAGCTGGAGAAGGTTCACGCCGAGAATGATGAACTCCATAAATCAACTTCTTCACTCGAGAACCTCTTAAACCAGGCTCGGCTTGACGTCTTCCCGTTCCTTCATCTAGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTACGGGATGACGATGTTATGCTTCTCAACTTGATAAGAACCATTAAAGAATTTGAATGGCTATCGGGCTTAGCAGTAAATTGGGACGAATCAACATTGTGCGGTGTGAATATTCCAGCTTCTCGCCCTCCACCAGGTAGCGTCTTCCTTAAATTGTCATTATTTCAAATGCCTCCAGTAATTTGCAAGCAAATCAAGAAAGCCATGAGGGATTTCTTTTGGGAAGGCAATTCCAAAGGACCGTTGAAGCATTTAATTAATTGGAAGATTACTTCCATGAACATTGAAGATGGCGGGTTGGGTATTGGTGGTCTTATGAGACTTTGCCCATTTGCAAGCGCTGACCATGGATCAACATTTATAAACAGTGGCATTGGGTCAAGAAGATCCTTGAAAGATGTTGAGTTAGTGGAATATACTAATCTACTTGCTATATTAAGCATGCTTTCGGTTAGTGCTGAGGCTAACCAAAGAATTTGGTCCCTGGAAACTTCTGGTCTGTTCTCTGTTTCATCCTTAAGCATATTGCAAAATGTTGCTCCAATGCATAAAGATCTGTTTGTTGCTTTATGGAAATCAAAGAGTCCAAGAAAGGTGAATGTGTTTTCTTGGATTCTTCTTCATGGGAAGCTTAATACTGCAGAAGTTATTCAGAAAAAGCTCTCTTCTTCTGCTTTACTACCGTCTATTTGTGTCCTTTGTAAAGAAAATGGGGAAGATTTGAATCATCTTTTTTCCATTGCTCCTTTGCTGTTGCTGGGTGGTTTTCTTAATTTTCTCAATTTTGTGTTGATTGGGTTTTGGATTACAAGGCAGAAGCCAATTTGA

Coding sequence (CDS)

ATGAAATTCGCCCCAACTCATCTCGCTCCCAACGGGTGCGCTGCTCTGCTTTTTGTGTGGTACACTTGTTGGGGTTTCAGTGCCGGAGATGATGAGCTTCTTTTAGACCTCTCCCAAGGCCAGCTCCCCGACAGCGAATACTCGTGGGGGGTGCACGACCTAGTGATAGACCTCGACAAGATTTGGTTCGAAGGGGTGCTTGACGATGTGAACCTCCATCAATGTAGTCTAAAATTGTTTTCCTCGCTCAACAAGAAATGCCATGCTGAGGTGCCCACTCTTGGTGAGGCAACTTCAAAGCATGGAAAATCCGGGAAGAGGTCGGATGAGGCGTCATCTCGATCTCTCCTCGAGCCCATCAATATTTCGTCAGAGGATGGGATACGACCAACTATCATTCCCAAGATGGACTTCAGTTACTCATTCAAGCTCAACTTCATGGAGGAATCAATACGTGATGCAGCTCTCAAGGCTTACAAGAATAGCTCGGAATGGGTGCTGAGTTTGAACGAAGGGGCCTTCCTGGAAAAACTTGGTGACTATGAGCTAAAGGCTGAGCTGGAGAAGGTTCACGCCGAGAATGATGAACTCCATAAATCAACTTCTTCACTCGAGAACCTCTTAAACCAGGCTCGGCTTGACGTCTTCCCGTTCCTTCATCTAGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAAATTACGTCGATACTTCCACATATTACGGGATGACGATGTTATGCTTCTCAACTTGATAAGAACCATTAAAGAATTTGAATGGCTATCGGGCTTAGCAGTAAATTGGGACGAATCAACATTGTGCGGTGTGAATATTCCAGCTTCTCGCCCTCCACCAGGTAGCGTCTTCCTTAAATTGTCATTATTTCAAATGCCTCCAGTAATTTGCAAGCAAATCAAGAAAGCCATGAGGGATTTCTTTTGGGAAGGCAATTCCAAAGGACCGTTGAAGCATTTAATTAATTGGAAGATTACTTCCATGAACATTGAAGATGGCGGGTTGGGTATTGGTGGTCTTATGAGACTTTGCCCATTTGCAAGCGCTGACCATGGATCAACATTTATAAACAGTGGCATTGGGTCAAGAAGATCCTTGAAAGATGTTGAGTTAGTGGAATATACTAATCTACTTGCTATATTAAGCATGCTTTCGGTTAGTGCTGAGGCTAACCAAAGAATTTGGTCCCTGGAAACTTCTGGTCTGTTCTCTGTTTCATCCTTAAGCATATTGCAAAATGTTGCTCCAATGCATAAAGATCTGTTTGTTGCTTTATGGAAATCAAAGAGTCCAAGAAAGGTGAATGTGTTTTCTTGGATTCTTCTTCATGGGAAGCTTAATACTGCAGAAGTTATTCAGAAAAAGCTCTCTTCTTCTGCTTTACTACCGTCTATTTGTGTCCTTTGTAAAGAAAATGGGGAAGATTTGAATCATCTTTTTTCCATTGCTCCTTTGCTGTTGCTGGGTGGTTTTCTTAATTTTCTCAATTTTGTGTTGATTGGGTTTTGGATTACAAGGCAGAAGCCAATTTGA

Protein sequence

MKFAPTHLAPNGCAALLFVWYTCWGFSAGDDELLLDLSQGQLPDSEYSWGVHDLVIDLDKIWFEGVLDDVNLHQCSLKLFSSLNKKCHAEVPTLGEATSKHGKSGKRSDEASSRSLLEPINISSEDGIRPTIIPKMDFSYSFKLNFMEESIRDAALKAYKNSSEWVLSLNEGAFLEKLGDYELKAELEKVHAENDELHKSTSSLENLLNQARLDVFPFLHLAYVLHVAFRPNDSMKLRRYFHILRDDDVMLLNLIRTIKEFEWLSGLAVNWDESTLCGVNIPASRPPPGSVFLKLSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGLMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLAILSMLSVSAEANQRIWSLETSGLFSVSSLSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLFSIAPLLLLGGFLNFLNFVLIGFWITRQKPI

Homology

[Close]

BLAST of Moc04g24650 vs. NCBI nr
Match: RVW47466.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-21
Identity = 69/206 (33.50%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------G 354
           LSLF++P  +  ++++  R+F W G  +G   HLI+W +       GGLGIG        
Sbjct: 453 LSLFKIPASVTAKVERMQRNFLWSGVGEGKRDHLISWDVVCKPRVKGGLGIGKIPLRNRA 512

Query: 355 LMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLAILSMLSVSAEANQ-RIWSLE 414
           L+    +      +T  +     RR+L D E+ +   L+  +  +++S  A+  R WSL 
Sbjct: 513 LLGKWLWRYPRESTTLWHQNFNFRRNLTDYEIEDLERLMRSIDCMNLSTSASDARSWSLL 572

Query: 415 TSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQK 474
           +SGLF+V S    LS   + +P+    FV  WKS+ P KV  F W++ H K+NT +++Q 
Sbjct: 573 SSGLFTVKSFSTALSQTSDSSPLIPSKFV--WKSQVPFKVKAFVWLVAHKKVNTNDLLQL 632

Query: 475 KLSSSALLPSICVLCKENGEDLNHLF 489
           +    AL   IC LC   GE  +HLF
Sbjct: 633 RRPHKALSLDICKLCMGQGESADHLF 656

[Close]

BLAST of Moc04g24650 vs. NCBI nr
Match: RVW56165.1 (Calcium-transporting ATPase 3, endoplasmic reticulum-type [Vitis vinifera])

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-20
Identity = 90/288 (31.25%), Postives = 126/288 (43.75%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------- 354
           LSLF++P  I  +I+K  R+F W G  +G   HL+ W++ S   E GGLG G        
Sbjct: 272 LSLFKIPASIASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKELGGLGFGKISLRNIA 331

Query: 355 --------------GLMRLCPFASADHGSTFINS-------------------------- 414
                         GL    PF S   G    NS                          
Sbjct: 332 LLGKWLWRFPRERSGLWNF-PFCSPSGGQWGENSFWEDLWWGNQSLCSQFADLYRVISVK 391

Query: 415 ----------------GIGSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSG 474
                            +  RR+L D E+     L++ LS +  S   A+ R WSL +SG
Sbjct: 392 NLTVSNVLGNSFPLDWNLNFRRNLTDSEIDLLQRLMSSLSTVRFSPSLADSRAWSLSSSG 451

Query: 475 LFSVSSLSI-LQNVAPMHKDLFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLS 513
           LF+V S  + L  V+  + +LF+    LW SK P KV   +WI+ HGK+NT + +Q +  
Sbjct: 452 LFTVKSFFLALSKVS--NPNLFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRP 511

[Close]

BLAST of Moc04g24650 vs. NCBI nr
Match: RVW41858.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 9.5e-20
Identity = 78/261 (29.89%), Postives = 113/261 (43.30%), Query Frame = 0


Query: 295  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------- 354
            LSLF++P  I  +I+K  RDF W G  +G   HLI W++ S   E GGLG G        
Sbjct: 1060 LSLFKIPVSIASKIEKMQRDFLWSGAGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSA 1119

Query: 355  --------------GL------------------------MRLCPFASADHG-------- 414
                          GL                           CP+ +            
Sbjct: 1120 LLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAIAQSYFCEKPYC 1179

Query: 415  ------STFINSGIGSRRSLKDVELVEYTNLLAIL-SMLSVSAEANQRIWSLETSGLFSV 474
                  S  ++     RR+L D E+     L++ L S+L   + ++ R WSL +SG FSV
Sbjct: 1180 LKCPWQSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSV 1239

Query: 475  SSL--SILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLP 493
             S   ++ ++  P+       LW SK P KV   +W++ HGK+NT + +Q +    AL P
Sbjct: 1240 KSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCP 1299

[Close]

BLAST of Moc04g24650 vs. NCBI nr
Match: RVW56231.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-18
Identity = 81/278 (29.14%), Postives = 118/278 (42.45%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL------ 354
           LSLF++P  +  +I+K  R+F W G  +G   HL+ W++ S   E GGLG G +      
Sbjct: 123 LSLFKIPASVASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKELGGLGFGKISLRNIA 182

Query: 355 ----------------------------------------MRLCP--------------- 414
                                                      CP               
Sbjct: 183 LLGKWLWRFPRERSGLWYKVIGSIYGTHPNGWDANMVVRWSHRCPWKAIAQVFQEFSPFV 242

Query: 415 -----FASADH----GSTFINSGI--GSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQR 474
                F    H       F++ G+    RR+L D E+     L++ LS +  S   A+ R
Sbjct: 243 RLVSYFCEKPHCFKCPWQFLSIGLEFKFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSR 302

Query: 475 IWSLETSGLFSVSSLSI-LQNVAPMHKDLFVA---LWKSKSPRKVNVFSWILLHGKLNTA 496
            WSL +SGLF+V S  + L  V+  +  LF+    LW SK P KV   +WI+ HGK+NT 
Sbjct: 303 AWSLSSSGLFTVKSFFLALSKVS--NPILFLPAKFLWSSKVPSKVKALAWIVAHGKVNTN 362

[Close]

BLAST of Moc04g24650 vs. NCBI nr
Match: CAN79629.1 (hypothetical protein VITISV_002584 [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-18
Identity = 71/227 (31.28%), Postives = 104/227 (45.81%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL------ 354
           LSLF +  ++  +I++  RDF W G  +G   HL+NW +       GGLG G +      
Sbjct: 507 LSLFMISALVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVA 566

Query: 355 -------------MRLC---------PFASADHGSTFINSGIGSRRSLKDVELVEYTNLL 414
                          LC         P +S    S   +     RR+L D E+ +   L+
Sbjct: 567 LLGKWLWRYPREGSALCISVVMDKNAPISSIIGYSRPFSWNFNFRRNLSDSEIEDLEGLM 626

Query: 415 AILSMLSVS-AEANQRIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRK 474
             L  L +S    ++R WSL   GLF+V S    LS      P+    FV  W S+ P K
Sbjct: 627 RSLDRLHISPLVPDKRSWSLSPLGLFTVKSFFLALSQYSESPPVFPTKFV--WNSQVPFK 686

Query: 475 VNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLF 489
           V  F W++ H K+NT +++Q +    AL P IC LC ++ E ++HLF
Sbjct: 687 VKSFVWLVAHKKVNTNDLLQLRRPHKALSPDICKLCMKHEETVDHLF 731

[Close]

BLAST of Moc04g24650 vs. ExPASy TrEMBL
Match: A0A438EIB2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_225 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.4e-22
Identity = 69/206 (33.50%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------G 354
           LSLF++P  +  ++++  R+F W G  +G   HLI+W +       GGLGIG        
Sbjct: 453 LSLFKIPASVTAKVERMQRNFLWSGVGEGKRDHLISWDVVCKPRVKGGLGIGKIPLRNRA 512

Query: 355 LMRLCPFASADHGSTFINSGIGSRRSLKDVELVEYTNLLAILSMLSVSAEANQ-RIWSLE 414
           L+    +      +T  +     RR+L D E+ +   L+  +  +++S  A+  R WSL 
Sbjct: 513 LLGKWLWRYPRESTTLWHQNFNFRRNLTDYEIEDLERLMRSIDCMNLSTSASDARSWSLL 572

Query: 415 TSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQK 474
           +SGLF+V S    LS   + +P+    FV  WKS+ P KV  F W++ H K+NT +++Q 
Sbjct: 573 SSGLFTVKSFSTALSQTSDSSPLIPSKFV--WKSQVPFKVKAFVWLVAHKKVNTNDLLQL 632

Query: 475 KLSSSALLPSICVLCKENGEDLNHLF 489
           +    AL   IC LC   GE  +HLF
Sbjct: 633 RRPHKALSLDICKLCMGQGESADHLF 656

[Close]

BLAST of Moc04g24650 vs. ExPASy TrEMBL
Match: M5W794 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa016462mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-20
Identity = 74/253 (29.25%), Postives = 118/253 (46.64%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL------ 354
           +SLF+ P  +  ++++ MR+F WEG   G   HL+ W+  + + E+GGLGIG L      
Sbjct: 666 MSLFK-PIGVATKVEQLMRNFLWEGLEDGKKCHLVRWERVTKSKEEGGLGIGSLRERNEA 725

Query: 355 -----MRLCPFASADHGSTFINSGIG---------------------------------- 414
                +   P  S       I S  G                                  
Sbjct: 726 LRAKWLWRFPLESNSLWHRIIKSKYGIDSNGFSVGNGEKIRFWEDLWLKEWILKNLFPRL 785

Query: 415 --------SRRSLKDVELVEYTNLLAILSMLSV-SAEANQRIWSLETSGLFSVSS----- 474
                   S+R+L + E+ E   LL IL  + +  + +++R W +E  G FS  S     
Sbjct: 786 SSLSRRKKSKRNLSEAEIAEVVILLDILGKVRLYGSRSDRRSWEIEEQGSFSCKSFRSFL 845

Query: 475 LSILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLPSICV 489
           LS  ++V P     F+++WK+K+P K+  F W+ ++G++NT + IQ++     L PS CV
Sbjct: 846 LSTTRDVFPP----FISIWKAKTPPKIQFFVWLAVNGRINTCDCIQRRQPKMCLYPSWCV 905

[Close]

BLAST of Moc04g24650 vs. ExPASy TrEMBL
Match: A0A438F829 (Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Vitis vinifera OX=29760 GN=ECA3_7 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-20
Identity = 90/288 (31.25%), Postives = 126/288 (43.75%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------- 354
           LSLF++P  I  +I+K  R+F W G  +G   HL+ W++ S   E GGLG G        
Sbjct: 272 LSLFKIPASIASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKELGGLGFGKISLRNIA 331

Query: 355 --------------GLMRLCPFASADHGSTFINS-------------------------- 414
                         GL    PF S   G    NS                          
Sbjct: 332 LLGKWLWRFPRERSGLWNF-PFCSPSGGQWGENSFWEDLWWGNQSLCSQFADLYRVISVK 391

Query: 415 ----------------GIGSRRSLKDVELVEYTNLLAILSMLSVSAE-ANQRIWSLETSG 474
                            +  RR+L D E+     L++ LS +  S   A+ R WSL +SG
Sbjct: 392 NLTVSNVLGNSFPLDWNLNFRRNLTDSEIDLLQRLMSSLSTVRFSPSLADSRAWSLSSSG 451

Query: 475 LFSVSSLSI-LQNVAPMHKDLFVA---LWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLS 513
           LF+V S  + L  V+  + +LF+    LW SK P KV   +WI+ HGK+NT + +Q +  
Sbjct: 452 LFTVKSFFLALSKVS--NPNLFLPAKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRP 511

[Close]

BLAST of Moc04g24650 vs. ExPASy TrEMBL
Match: A0A438E2D1 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1027 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-20
Identity = 78/261 (29.89%), Postives = 113/261 (43.30%), Query Frame = 0


Query: 295  LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIG-------- 354
            LSLF++P  I  +I+K  RDF W G  +G   HLI W++ S   E GGLG G        
Sbjct: 1060 LSLFKIPVSIASKIEKMQRDFLWSGAGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSA 1119

Query: 355  --------------GL------------------------MRLCPFASADHG-------- 414
                          GL                           CP+ +            
Sbjct: 1120 LLGKWLWRFPRERSGLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAIAQSYFCEKPYC 1179

Query: 415  ------STFINSGIGSRRSLKDVELVEYTNLLAIL-SMLSVSAEANQRIWSLETSGLFSV 474
                  S  ++     RR+L D E+     L++ L S+L   + ++ R WSL +SG FSV
Sbjct: 1180 LKCPWQSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSV 1239

Query: 475  SSL--SILQNVAPMHKDLFVALWKSKSPRKVNVFSWILLHGKLNTAEVIQKKLSSSALLP 493
             S   ++ ++  P+       LW SK P KV   +W++ HGK+NT + +Q +    AL P
Sbjct: 1240 KSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCP 1299

[Close]

BLAST of Moc04g24650 vs. ExPASy TrEMBL
Match: A5C3A7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_002584 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.7e-19
Identity = 71/227 (31.28%), Postives = 104/227 (45.81%), Query Frame = 0


Query: 295 LSLFQMPPVICKQIKKAMRDFFWEGNSKGPLKHLINWKITSMNIEDGGLGIGGL------ 354
           LSLF +  ++  +I++  RDF W G  +G   HL+NW +       GGLG G +      
Sbjct: 507 LSLFMISALVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVA 566

Query: 355 -------------MRLC---------PFASADHGSTFINSGIGSRRSLKDVELVEYTNLL 414
                          LC         P +S    S   +     RR+L D E+ +   L+
Sbjct: 567 LLGKWLWRYPREGSALCISVVMDKNAPISSIIGYSRPFSWNFNFRRNLSDSEIEDLEGLM 626

Query: 415 AILSMLSVS-AEANQRIWSLETSGLFSVSS----LSILQNVAPMHKDLFVALWKSKSPRK 474
             L  L +S    ++R WSL   GLF+V S    LS      P+    FV  W S+ P K
Sbjct: 627 RSLDRLHISPLVPDKRSWSLSPLGLFTVKSFFLALSQYSESPPVFPTKFV--WNSQVPFK 686

Query: 475 VNVFSWILLHGKLNTAEVIQKKLSSSALLPSICVLCKENGEDLNHLF 489
           V  F W++ H K+NT +++Q +    AL P IC LC ++ E ++HLF
Sbjct: 687 VKSFVWLVAHKKVNTNDLLQLRRPHKALSPDICKLCMKHEETVDHLF 731

The following BLAST results are available for this feature:

BLAST of Moc04g24650 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW47466.1	1.7e-21	33.50	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW56165.1	3.3e-20	31.25	Calcium-transporting ATPase 3, endoplasmic reticulum-type [Vitis vinifera]	[more]
RVW41858.1	9.5e-20	29.89	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW56231.1	1.8e-18	29.14	putative ribonuclease H protein [Vitis vinifera]	[more]
CAN79629.1	1.8e-18	31.28	hypothetical protein VITISV_002584 [Vitis vinifera]	[more]

BLAST of Moc04g24650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438EIB2	8.4e-22	33.50	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_225 P...	[more]
M5W794	1.2e-20	29.25	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A438F829	1.6e-20	31.25	Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Vitis vinifera OX=2...	[more]
A0A438E2D1	4.6e-20	29.89	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1027 ...	[more]
A5C3A7	8.7e-19	31.28	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_002584 PE=3 SV=1	[more]

BLAST of Moc04g24650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 411..491 e-value: 2.0E-11 score: 44.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24650.1	Moc04g24650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0110165	cellular anatomical entity