Moc04g24530 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24530
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 17745846 .. 17746298 (-)
RNA-Seq Expression	Moc04g24530
Synteny	Moc04g24530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCGTATGACGGATTCGGAGATCCTGTTTCTTACGTAGAGGTTTTCGAAGGAAAAATGGATTTCCTAGCTGCCAGTGATGCAATGAAGTGTCGTGCATTCCAGATTGCACTGGAAAGGTCAGCACGACTTTGGTATCGACAGTTGAAGCTGAAGTCTATCGACAATTATCAGCAGCTCTGTCACATGTTCATCAACCAGTTCTTCGCTCGACAGTTGTTGAAGCTGCCTCTCTCTCACCTCGGAACAGTGAAGCAATGGGATAATGAGTCCCTTATTAATTATATAGCTCCATTTGTGGACGAGCATGTGAAGGTGGTCAGCTTGATATACTTCACGACGGGATTGAACGATCGCAATCTGACTATAGAGTTCGGCAGTAGACCTCACGTCTCACTTAACGAGATGCTTGCTCGAGCCCGACAATACAACGATGGATTAGAGCTCTAG

mRNA sequence

ATGAGCTCGTATGACGGATTCGGAGATCCTGTTTCTTACGTAGAGGTTTTCGAAGGAAAAATGGATTTCCTAGCTGCCAGTGATGCAATGAAGTGTCGTGCATTCCAGATTGCACTGGAAAGGTCAGCACGACTTTGGTATCGACAGTTGAAGCTGAAGTCTATCGACAATTATCAGCAGCTCTGTCACATGTTCATCAACCAGTTCTTCGCTCGACAGTTGTTGAAGCTGCCTCTCTCTCACCTCGGAACAGTGAAGCAATGGGATAATGAGTCCCTTATTAATTATATAGCTCCATTTGTGGACGAGCATGTGAAGGTGGTCAGCTTGATATACTTCACGACGGGATTGAACGATCGCAATCTGACTATAGAGTTCGGCAGTAGACCTCACGTCTCACTTAACGAGATGCTTGCTCGAGCCCGACAATACAACGATGGATTAGAGCTCTAG

Coding sequence (CDS)

ATGAGCTCGTATGACGGATTCGGAGATCCTGTTTCTTACGTAGAGGTTTTCGAAGGAAAAATGGATTTCCTAGCTGCCAGTGATGCAATGAAGTGTCGTGCATTCCAGATTGCACTGGAAAGGTCAGCACGACTTTGGTATCGACAGTTGAAGCTGAAGTCTATCGACAATTATCAGCAGCTCTGTCACATGTTCATCAACCAGTTCTTCGCTCGACAGTTGTTGAAGCTGCCTCTCTCTCACCTCGGAACAGTGAAGCAATGGGATAATGAGTCCCTTATTAATTATATAGCTCCATTTGTGGACGAGCATGTGAAGGTGGTCAGCTTGATATACTTCACGACGGGATTGAACGATCGCAATCTGACTATAGAGTTCGGCAGTAGACCTCACGTCTCACTTAACGAGATGCTTGCTCGAGCCCGACAATACAACGATGGATTAGAGCTCTAG

Protein sequence

MSSYDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQLCHMFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVVSLIYFTTGLNDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL

Homology

[Close]

BLAST of Moc04g24530 vs. NCBI nr
Match: XP_022152851.1 (uncharacterized protein LOC111020475 [Momordica charantia])

HSP 1 Score: 230.7 bits (587), Expect = 8.2e-57
Identity = 120/156 (76.92%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 1   MSSYDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQ 60
           MSSYDG GDP+SYVEVFEGKMDFLA SDAMKC AFQI LE S RLWYRQLKL+SID+YQQ
Sbjct: 1   MSSYDGSGDPISYVEVFEGKMDFLAVSDAMKCGAFQITLEGSTRLWYRQLKLRSIDSYQQ 60

Query: 61  LCHMFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVVS------LIYFT 120
           L  +FINQF  RQ LKLPLSHLGTVKQ DNES   YIA F+DEHVKVVS      ++YFT
Sbjct: 61  LRRLFINQFSTRQFLKLPLSHLGTVKQRDNESFTVYIARFMDEHVKVVSCTDDIAMMYFT 120

Query: 121 TGLNDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
           TGLNDRNLTIEFGS     LNEM ARARQY DGLEL
Sbjct: 121 TGLNDRNLTIEFGSYQPAYLNEMFARARQYIDGLEL 156

[Close]

BLAST of Moc04g24530 vs. NCBI nr
Match: XP_022149029.1 (uncharacterized protein LOC111017548 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-47
Identity = 105/136 (77.21%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 21  MDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQLCHMFINQFFARQLLKLPLS 80
           MDFLAASDA+KCRAFQIALE S RLWY+QLK +SID+YQQL  +FINQF ARQLLKLP S
Sbjct: 1   MDFLAASDAIKCRAFQIALEGSVRLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPS 60

Query: 81  HLGTVKQWDNESLINYIAPFVDEHVKVVS------LIYFTTGLNDRNLTIEFGSRPHVSL 140
           HL TVKQ DNESL  YIA  +DEHVKVVS      ++YFTTGLNDRNLTIEFGSRP  SL
Sbjct: 61  HLETVKQRDNESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASL 120

Query: 141 NEMLARARQYNDGLEL 151
           N+MLARARQY DGLEL
Sbjct: 121 NKMLARARQYIDGLEL 136

[Close]

BLAST of Moc04g24530 vs. NCBI nr
Match: XP_022159250.1 (uncharacterized protein LOC111025663 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-30
Identity = 75/156 (48.08%), Postives = 100/156 (64.10%), Query Frame = 0


Query: 1   MSSYDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQ 60
           M  YDG  DP  YVEVFEG MDF AA+DA+KCRAFQIAL  SARLWYR+L  +SI  Y Q
Sbjct: 51  MKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQ 110

Query: 61  LCHMFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVV------SLIYFT 120
           L   FI+QF +R   +   +HL T++Q + E+L  Y+  F++E +KV       ++ YF 
Sbjct: 111 LRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLEEQLKVAHCSDDSAMCYFL 170

Query: 121 TGLNDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
           TGL D NLT++ G     +  E+L +A++  DG EL
Sbjct: 171 TGLADENLTVKLGEEAPATFAEVLQKAKKVIDGQEL 206

[Close]

BLAST of Moc04g24530 vs. NCBI nr
Match: XP_022156088.1 (uncharacterized protein LOC111023060 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 2.9e-30
Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 1   MSSYDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQ 60
           M SYDG  DP  YVEVFEG MDF AA+DA+KCRAFQIAL  SARLWYR+L  +SI  Y Q
Sbjct: 157 MKSYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQ 216

Query: 61  LCHMFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVV------SLIYFT 120
           L   FI+QFF+R   +   +HL T++Q + ++L  YI  F +E +KVV      S+ YF 
Sbjct: 217 LRKEFISQFFSRHYDRKTTTHLATIRQKEGKTLKEYITRFQEEQLKVVHCSDDSSMCYFL 276

Query: 121 TGLNDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
           TGL D   T++ G     +  E+L   +++ DG EL
Sbjct: 277 TGLADETPTVKLGEEALATFAEVLQMEKKFIDGQEL 312

[Close]

BLAST of Moc04g24530 vs. NCBI nr
Match: XP_022156542.1 (uncharacterized protein LOC111023421 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 4.2e-29
Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 4   YDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQLCH 63
           YDG  DP  YVEVFEG MDF AASDA+KCRAFQIAL  SARLWYR+L  +SI  Y QL  
Sbjct: 89  YDGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQLRR 148

Query: 64  MFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVV------SLIYFTTGL 123
            F+ QF +R   K   +HL T++Q + E+L  Y+  F +E +KV       ++ YF TGL
Sbjct: 149 EFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFLTGL 208

Query: 124 NDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
            D  LT++ G     +  E+L +A++  DG EL
Sbjct: 209 ADEALTVKLGEEAPATFAEVLQKAKKVIDGQEL 241

[Close]

BLAST of Moc04g24530 vs. ExPASy TrEMBL
Match: A0A6J1DIZ8 (uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020475 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.0e-57
Identity = 120/156 (76.92%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 1   MSSYDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQ 60
           MSSYDG GDP+SYVEVFEGKMDFLA SDAMKC AFQI LE S RLWYRQLKL+SID+YQQ
Sbjct: 1   MSSYDGSGDPISYVEVFEGKMDFLAVSDAMKCGAFQITLEGSTRLWYRQLKLRSIDSYQQ 60

Query: 61  LCHMFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVVS------LIYFT 120
           L  +FINQF  RQ LKLPLSHLGTVKQ DNES   YIA F+DEHVKVVS      ++YFT
Sbjct: 61  LRRLFINQFSTRQFLKLPLSHLGTVKQRDNESFTVYIARFMDEHVKVVSCTDDIAMMYFT 120

Query: 121 TGLNDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
           TGLNDRNLTIEFGS     LNEM ARARQY DGLEL
Sbjct: 121 TGLNDRNLTIEFGSYQPAYLNEMFARARQYIDGLEL 156

[Close]

BLAST of Moc04g24530 vs. ExPASy TrEMBL
Match: A0A6J1D5T3 (uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017548 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 105/136 (77.21%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 21  MDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQLCHMFINQFFARQLLKLPLS 80
           MDFLAASDA+KCRAFQIALE S RLWY+QLK +SID+YQQL  +FINQF ARQLLKLP S
Sbjct: 1   MDFLAASDAIKCRAFQIALEGSVRLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPS 60

Query: 81  HLGTVKQWDNESLINYIAPFVDEHVKVVS------LIYFTTGLNDRNLTIEFGSRPHVSL 140
           HL TVKQ DNESL  YIA  +DEHVKVVS      ++YFTTGLNDRNLTIEFGSRP  SL
Sbjct: 61  HLETVKQRDNESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASL 120

Query: 141 NEMLARARQYNDGLEL 151
           N+MLARARQY DGLEL
Sbjct: 121 NKMLARARQYIDGLEL 136

[Close]

BLAST of Moc04g24530 vs. ExPASy TrEMBL
Match: A0A6J1DY58 (uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025663 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.9e-31
Identity = 75/156 (48.08%), Postives = 100/156 (64.10%), Query Frame = 0


Query: 1   MSSYDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQ 60
           M  YDG  DP  YVEVFEG MDF AA+DA+KCRAFQIAL  SARLWYR+L  +SI  Y Q
Sbjct: 51  MKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQ 110

Query: 61  LCHMFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVV------SLIYFT 120
           L   FI+QF +R   +   +HL T++Q + E+L  Y+  F++E +KV       ++ YF 
Sbjct: 111 LRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLEEQLKVAHCSDDSAMCYFL 170

Query: 121 TGLNDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
           TGL D NLT++ G     +  E+L +A++  DG EL
Sbjct: 171 TGLADENLTVKLGEEAPATFAEVLQKAKKVIDGQEL 206

[Close]

BLAST of Moc04g24530 vs. ExPASy TrEMBL
Match: A0A6J1DPN4 (uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023060 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 0


Query: 1   MSSYDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQ 60
           M SYDG  DP  YVEVFEG MDF AA+DA+KCRAFQIAL  SARLWYR+L  +SI  Y Q
Sbjct: 157 MKSYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQ 216

Query: 61  LCHMFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVV------SLIYFT 120
           L   FI+QFF+R   +   +HL T++Q + ++L  YI  F +E +KVV      S+ YF 
Sbjct: 217 LRKEFISQFFSRHYDRKTTTHLATIRQKEGKTLKEYITRFQEEQLKVVHCSDDSSMCYFL 276

Query: 121 TGLNDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
           TGL D   T++ G     +  E+L   +++ DG EL
Sbjct: 277 TGLADETPTVKLGEEALATFAEVLQMEKKFIDGQEL 312

[Close]

BLAST of Moc04g24530 vs. ExPASy TrEMBL
Match: A0A6J1DS95 (uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023421 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 74/153 (48.37%), Postives = 96/153 (62.75%), Query Frame = 0


Query: 4   YDGFGDPVSYVEVFEGKMDFLAASDAMKCRAFQIALERSARLWYRQLKLKSIDNYQQLCH 63
           YDG  DP  YVEVFEG MDF AASDA+KCRAFQIAL  SARLWYR+L  +SI  Y QL  
Sbjct: 89  YDGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQLRR 148

Query: 64  MFINQFFARQLLKLPLSHLGTVKQWDNESLINYIAPFVDEHVKVV------SLIYFTTGL 123
            F+ QF +R   K   +HL T++Q + E+L  Y+  F +E +KV       ++ YF TGL
Sbjct: 149 EFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFLTGL 208

Query: 124 NDRNLTIEFGSRPHVSLNEMLARARQYNDGLEL 151
            D  LT++ G     +  E+L +A++  DG EL
Sbjct: 209 ADEALTVKLGEEAPATFAEVLQKAKKVIDGQEL 241

The following BLAST results are available for this feature:

BLAST of Moc04g24530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152851.1	8.2e-57	76.92	uncharacterized protein LOC111020475 [Momordica charantia]	[more]
XP_022149029.1	3.5e-47	77.21	uncharacterized protein LOC111017548 [Momordica charantia]	[more]
XP_022159250.1	1.0e-30	48.08	uncharacterized protein LOC111025663 [Momordica charantia]	[more]
XP_022156088.1	2.9e-30	48.72	uncharacterized protein LOC111023060 [Momordica charantia]	[more]
XP_022156542.1	4.2e-29	48.37	uncharacterized protein LOC111023421 [Momordica charantia]	[more]

BLAST of Moc04g24530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIZ8	4.0e-57	76.92	uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1D5T3	1.7e-47	77.21	uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DY58	4.9e-31	48.08	uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DPN4	1.4e-30	48.72	uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DS95	2.1e-29	48.37	uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Moc04g24530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 35..100 e-value: 7.4E-7 score: 29.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24530.1	Moc04g24530.1	mRNA