Moc04g24470 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24470
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 17681112 .. 17682334 (+)
RNA-Seq Expression	Moc04g24470
Synteny	Moc04g24470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGTTGGAGGTTTGTTAACCTTGGGGAGCATACTGGCAGTAAAACAATTTAGCACGAGGTCTTGTCGATTTTGCTTTCAAGTCAGTGGTTCCGCCCATGGCACCACAAATTTAGCTTCTGGTTCCAATTTTGTCATTTATTTTCCAAGAATTTGAAAGCAAAATCATCTACCCATGACTGCTATCCAATCTGGGAAGGTCTTCCAAGACTTGTCAAAATTGGAACCACTCGACAGATCCAACTACCGGCAATGGTAACAGAAGTTACTGATTTTCTTTGAGTAGTTAGAGATCGACTACATCCTCACTGCTGATCAGCCCACCGATGCAGCCACTACCACTGTCGCTGCTACCACTGCCGTTTCCATCACTATAGTCGTCACTGATCCGCTTGCCGTTGTCGCTGCCACCATTTCAGCTGTCGATGTTGATCCCGGGATGTCAACTGTCACTGTCGTCGAAACTGACAAATTTGAGAAGGACAAAAAACGGTCTGTGGGCATCTTCTCAATCATATGAACGACTCTCTTTTGATATCTTTGTTGTCCAAAATCTGCAAAGGTCATTTGGGACATGTTAGAGTCTAGATATGACGGGGACAATGCAGGCAGGAGAAAGTACGTCGTCGGTAAATGGCTGCAATTTCAAATATTGGTGACAAACCGGTGAGGGATCAGATTCATGAGTACGAGAGCCTGATGTTAAGTGTGCCGTCTGAAGGCATGAAGATGTGCGAGATTGTTCAAGTCAATGTGTTGCTCGAGAAATTTCCTCCTTCCTGGTGGGATTATCGCAATCACTTGAAACATTAAAAGAATGACCTGGCTCTGCAAGAACTGATCAGTCACGTACGCACGGAGGAAGCCAACAGACTAAAGGATAAGCTATCTTCTTAATCCCTAAATTTAGTTCAAGCTAATTTAGTTAAATCTTCTAGTGCTTCCAAAGACAAGTTCAAAAACAAAGGGAATCAAATTACAAGGGACAGAGCTCAAAAGAACAAAGGTCTCCAACCCCAAAATACTGGTGGAAGAATCGAGAAATCGAAACTAGTATGCTATGTCTGCGAAAAACCCGGGGCACAAATCCTTTCAGTGCATCCAAGGGAAAGATAGGAAAGATCAAAGGGCTACTCTACAAGCCAACCTTGTAGAGATGGATGATATCATTGCCGTTGTGGTTGTGGAAGCAAATCTGGTAGAGAACAAATCCGATTGA

mRNA sequence

ATGTCTGAGTTGGAGAATTTGAAAGCAAAATCATCTACCCATGACTGCTATCCAATCTGGGAAGAGATCGACTACATCCTCACTGCTGATCAGCCCACCGATGCAGCCACTACCACTGTCGCTGCTACCACTGCCGTTTCCATCACTATAGTCGTCACTGATCCGCTTGCCGTTGTCGCTGCCACCATTTCAGCTGTCGATGTTGATCCCGGGATGTCAACTGTCACTGTCGTCGAAACTGACAAATTTGAGAAGGACAAAAAACGGCATGAAGATGTGCGAGATTGTTCAAGTCAATGTGTTGCTCGAGAAATTTCCTCCTTCCTGTGCATCCAAGGGAAAGATAGGAAAGATCAAAGGGCTACTCTACAAGCCAACCTTGTAGAGATGGATGATATCATTGCCGTTGTGGTTGTGGAAGCAAATCTGGTAGAGAACAAATCCGATTGA

Coding sequence (CDS)

ATGTCTGAGTTGGAGAATTTGAAAGCAAAATCATCTACCCATGACTGCTATCCAATCTGGGAAGAGATCGACTACATCCTCACTGCTGATCAGCCCACCGATGCAGCCACTACCACTGTCGCTGCTACCACTGCCGTTTCCATCACTATAGTCGTCACTGATCCGCTTGCCGTTGTCGCTGCCACCATTTCAGCTGTCGATGTTGATCCCGGGATGTCAACTGTCACTGTCGTCGAAACTGACAAATTTGAGAAGGACAAAAAACGGCATGAAGATGTGCGAGATTGTTCAAGTCAATGTGTTGCTCGAGAAATTTCCTCCTTCCTGTGCATCCAAGGGAAAGATAGGAAAGATCAAAGGGCTACTCTACAAGCCAACCTTGTAGAGATGGATGATATCATTGCCGTTGTGGTTGTGGAAGCAAATCTGGTAGAGAACAAATCCGATTGA

Protein sequence

MSELENLKAKSSTHDCYPIWEEIDYILTADQPTDAATTTVAATTAVSITIVVTDPLAVVAATISAVDVDPGMSTVTVVETDKFEKDKKRHEDVRDCSSQCVAREISSFLCIQGKDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD

Homology

[Close]

BLAST of Moc04g24470 vs. NCBI nr
Match: XP_022156810.1 (uncharacterized protein LOC111023645 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 34/46 (73.91%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 104 EISSFLCIQGKDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD 150
           E+    C Q KDRKDQRAT Q NL E DDII VVVVEANLVENKSD
Sbjct: 34  ELKRTKCTQRKDRKDQRATRQVNLTETDDIIDVVVVEANLVENKSD 79

[Close]

BLAST of Moc04g24470 vs. NCBI nr
Match: XP_022153695.1 (uncharacterized protein LOC111021147 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 34/50 (68.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 100 CVAREISSFLCIQGKDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD 150
           C   E  S+ C Q KDR DQRAT QANL E DDII  VVVE NLVENKSD
Sbjct: 143 CEKPEHKSYQCTQKKDRIDQRATPQANLTETDDIITTVVVETNLVENKSD 192

[Close]

BLAST of Moc04g24470 vs. NCBI nr
Match: XP_022156023.1 (uncharacterized protein LOC111022991 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 107 SFLCIQGKDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD 150
           S+ C Q KDRKDQR   QAN+VE  +IIA VVVEANLVENKS+
Sbjct: 172 SYQCTQKKDRKDQRIAPQANIVETXNIIAXVVVEANLVENKSN 214

[Close]

BLAST of Moc04g24470 vs. ExPASy TrEMBL
Match: A0A6J1DRD8 (uncharacterized protein LOC111023645 OS=Momordica charantia OX=3673 GN=LOC111023645 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 34/46 (73.91%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 104 EISSFLCIQGKDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD 150
           E+    C Q KDRKDQRAT Q NL E DDII VVVVEANLVENKSD
Sbjct: 34  ELKRTKCTQRKDRKDQRATRQVNLTETDDIIDVVVVEANLVENKSD 79

[Close]

BLAST of Moc04g24470 vs. ExPASy TrEMBL
Match: A0A6J1DHJ4 (uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021147 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.3e-07
Identity = 34/50 (68.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 100 CVAREISSFLCIQGKDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD 150
           C   E  S+ C Q KDR DQRAT QANL E DDII  VVVE NLVENKSD
Sbjct: 143 CEKPEHKSYQCTQKKDRIDQRATPQANLTETDDIITTVVVETNLVENKSD 192

[Close]

BLAST of Moc04g24470 vs. ExPASy TrEMBL
Match: A0A6J1DPG7 (uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022991 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 107 SFLCIQGKDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD 150
           S+ C Q KDRKDQR   QAN+VE  +IIA VVVEANLVENKS+
Sbjct: 172 SYQCTQKKDRKDQRIAPQANIVETXNIIAXVVVEANLVENKSN 214

[Close]

BLAST of Moc04g24470 vs. ExPASy TrEMBL
Match: A0A6J1CLZ1 (uncharacterized protein LOC111012183 OS=Momordica charantia OX=3673 GN=LOC111012183 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.6e-04
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 114 KDRKDQRATLQANLVEMDDIIAVVVVEANLVENKSD 150
           KDRKDQ AT QA+LVE +DI+A VVVEANLVENK D
Sbjct: 53  KDRKDQMATPQASLVETNDIVAAVVVEANLVENKCD 88

The following BLAST results are available for this feature:

BLAST of Moc04g24470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156810.1	1.0e-06	73.91	uncharacterized protein LOC111023645 [Momordica charantia]	[more]
XP_022153695.1	1.7e-06	68.00	uncharacterized protein LOC111021147 [Momordica charantia]	[more]
XP_022156023.1	1.2e-04	69.77	uncharacterized protein LOC111022991 [Momordica charantia]	[more]

BLAST of Moc04g24470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRD8	4.9e-07	73.91	uncharacterized protein LOC111023645 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DHJ4	8.3e-07	68.00	uncharacterized protein LOC111021147 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DPG7	6.0e-05	69.77	uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CLZ1	6.6e-04	77.78	uncharacterized protein LOC111012183 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of Moc04g24470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24470.1	Moc04g24470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding