Moc04g24430 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24430
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr4: 17642873 .. 17643667 (-)
RNA-Seq Expression	Moc04g24430
Synteny	Moc04g24430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGCTGGGGACATTTCTCAACCTACCAATTTAGTTGAATCTCATAATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAATCAGAAGAGGGCTTCCCTCAACACAGTTCGTCACATGATGCTCAGCTTTCCAAGAAAGGCCAACAAATTCCTACAAACTGCCAGGTTGAATTCACATTCAAAGATGGACAAACATCAAAGGTCAATTACTCAGATAATTTAAAAGGTAAAGAAAAAGAAAATGTTACCAATGGAAATGCTGAAGGAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACAGAACAGCTGCCGATGCCTTTAATTAATAAAGAGCCGCATCCTGAAACGAATAGAAGCTCTATTAAAAGGAAAAATAAAGTCCAGGTAGTAATTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTTGTGGCATATAGTCCTTCTACGGCACCCATAAACTCATTGACTCTGCAGAATGATCCACAAACATTACTCGATAATCATAGTAGTCGGAGGCAACTAAAGCGAGAGAGCTTCCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCATACCCGTAGAGCCATTGCAACAATCTTATCCAAAGTGGTACGACCCGCAAGTCCACTATGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGTGCAAGTTCTAATAAAGGCAGAATAG

mRNA sequence

ATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGCTGGGGACATTTCTCAACCTACCAATTTAGTTGAATCTCATAATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAATCAGAAGAGGGCTTCCCTCAACACAGTTCGTCACATGATGCTCAGCTTTCCAAGAAAGGCCAACAAATTCCTACAAACTGCCAGGTTGAATTCACATTCAAAGATGGACAAACATCAAAGGTCAATTACTCAGATAATTTAAAAGGTAAAGAAAAAGAAAATGTTACCAATGGAAATGCTGAAGGAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACAGAACAGCTGCCGATGCCTTTAATTAATAAAGAGCCGCATCCTGAAACGAATAGAAGCTCTATTAAAAGGAAAAATAAAGTCCAGGTAGTAATTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTTGTGGCATATAGTCCTTCTACGGCACCCATAAACTCATTGACTCTGCAGAATGATCCACAAACATTACTCGATAATCATAGTAGTCGGAGGCAACTAAAGCGAGAGAGCTTCCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCATACCCGTAGAGCCATTGCAACAATCTTATCCAAAGTGGTACGACCCGCAAGTCCACTATGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGTGCAAGTTCTAATAAAGGCAGAATAG

Coding sequence (CDS)

ATGGAAATTTTAAATGTCTTAAAGAATATTGTTACAGCTGGGGACATTTCTCAACCTACCAATTTAGTTGAATCTCATAATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAATCAGAAGAGGGCTTCCCTCAACACAGTTCGTCACATGATGCTCAGCTTTCCAAGAAAGGCCAACAAATTCCTACAAACTGCCAGGTTGAATTCACATTCAAAGATGGACAAACATCAAAGGTCAATTACTCAGATAATTTAAAAGGTAAAGAAAAAGAAAATGTTACCAATGGAAATGCTGAAGGAACTGCAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACAGAACAGCTGCCGATGCCTTTAATTAATAAAGAGCCGCATCCTGAAACGAATAGAAGCTCTATTAAAAGGAAAAATAAAGTCCAGGTAGTAATTTCGAAGCGCAAGGGGAAGTACCAACAAGGATTTGTGGCATATAGTCCTTCTACGGCACCCATAAACTCATTGACTCTGCAGAATGATCCACAAACATTACTCGATAATCATAGTAGTCGGAGGCAACTAAAGCGAGAGAGCTTCCATCCGATCCCAATATCCTACACTGAGTTGTTATCCCAATTATTTCAAGGTAATCTATTAGCTCCCATACCCGTAGAGCCATTGCAACAATCTTATCCAAAGTGGTACGACCCGCAAGTCCACTATGATTACCATGCAGGAGCTGTAGGTCATTCAACTGAGAACTGTACTTCACTAAAGCATAAAGTGCAAGTTCTAATAAAGGCAGAATAG

Protein sequence

MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQQIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPMPLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKAE

Homology

[Close]

BLAST of Moc04g24430 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 334.3 bits (856), Expect = 9.3e-88
Identity = 171/213 (80.28%), Postives = 184/213 (86.38%), Query Frame = 0


Query: 1   MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQ 60
           M+ILNVLKNIVT G  SQP NLVE +NNSSPRVDPPLCQS+EGFPQHSSSHDAQLSKKGQ
Sbjct: 61  MKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQ 120

Query: 61  QIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPM 120
           Q+PTNCQVEFTFKD QT KVNYSDNLKG+EKENVT             QRWG+A EQLP+
Sbjct: 121 QVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVT-------------QRWGKAIEQLPV 180

Query: 121 PLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLL 180
           PLINKEPHP+ N+SSIKRKNKV  V+SKRK KYQQGFVAYSPST PINS+TLQ+DPQTL 
Sbjct: 181 PLINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPINSMTLQDDPQTLP 240

Query: 181 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNL 214
           +NHSSRRQLKRESFH IP SYTELLSQLFQGNL
Sbjct: 241 NNHSSRRQLKRESFHSIPTSYTELLSQLFQGNL 260

[Close]

BLAST of Moc04g24430 vs. NCBI nr
Match: KAA0054657.1 (uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa] >TYK08606.1 uncharacterized protein E5676_scaffold3734G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 6.8e-22
Identity = 79/195 (40.51%), Postives = 100/195 (51.28%), Query Frame = 0


Query: 85  NLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPMPLINKE-----------PHPETNR 144
           NL+  EK+NV          KEYAQRW E   Q+  PL +KE           P+ +   
Sbjct: 181 NLQRMEKKNV-------ETFKEYAQRWRELATQVQPPLTDKELMAMFINTLRAPYYDRMV 240

Query: 145 SSIKRKNKVQVVISKRKGKYQQGFVAYSPS-----TAPINSLTLQNDPQTLLDNHSSRRQ 204
            S+       + I +R     +    YSPS      +P    T +N          +R  
Sbjct: 241 GSVSINFSDVITIGER----IEFETNYSPSYQNRGKSPFGQATQRN----------ARNS 300

Query: 205 LKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTE 264
            K+  F PIP+SYTELL QL + + +A +P EPLQ  YPKWYDP V  +YHAGAVGHSTE
Sbjct: 301 WKQTYFDPIPMSYTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKREYHAGAVGHSTE 354

[Close]

BLAST of Moc04g24430 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 8.8e-22
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 181 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHA 240
           +  ++R   K+  F PIP++YTELL QLFQ N LAP+PV+P+Q  YP+WYD     DYHA
Sbjct: 335 EQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDTNARCDYHA 394

Query: 241 GAVGHSTENCTSLKHKVQVLIKA 264
           GA+GHSTENCT+LK++VQ LIKA
Sbjct: 395 GAIGHSTENCTALKYRVQALIKA 417

[Close]

BLAST of Moc04g24430 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-21
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 181 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHA 240
           +N S+R+Q     F PIP++YTELL QLFQ N LAP+PV+P+Q  YP WYD     DYHA
Sbjct: 440 NNRSTRKQ---SQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPGWYDANXRCDYHA 499

Query: 241 GAVGHSTENCTSLKHKVQVLIKA 264
           GA+GHSTENCT+LK++VQ LIKA
Sbjct: 500 GAIGHSTENCTALKYRVQALIKA 519

[Close]

BLAST of Moc04g24430 vs. NCBI nr
Match: EOX94372.1 (Uncharacterized protein TCM_003960 [Theobroma cacao])

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-21
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 162  PSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEP 221
            P T P   +   N+P         +  L+R  F PIP+ YT LL QL +  LLA  P+EP
Sbjct: 928  PQTPPPRPVASTNNPGN--GQRGPKTTLERPKFDPIPVPYTTLLPQLIENRLLARTPLEP 987

Query: 222  LQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA 264
            L+ S+PKWYDP  H DYH G  GHSTENCT+LKHKVQVLIKA
Sbjct: 988  LRPSFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQVLIKA 1027

[Close]

BLAST of Moc04g24430 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.5e-88
Identity = 171/213 (80.28%), Postives = 184/213 (86.38%), Query Frame = 0


Query: 1   MEILNVLKNIVTAGDISQPTNLVESHNNSSPRVDPPLCQSEEGFPQHSSSHDAQLSKKGQ 60
           M+ILNVLKNIVT G  SQP NLVE +NNSSPRVDPPLCQS+EGFPQHSSSHDAQLSKKGQ
Sbjct: 61  MKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQ 120

Query: 61  QIPTNCQVEFTFKDGQTSKVNYSDNLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPM 120
           Q+PTNCQVEFTFKD QT KVNYSDNLKG+EKENVT             QRWG+A EQLP+
Sbjct: 121 QVPTNCQVEFTFKDEQTPKVNYSDNLKGEEKENVT-------------QRWGKAIEQLPV 180

Query: 121 PLINKEPHPETNRSSIKRKNKVQVVISKRKGKYQQGFVAYSPSTAPINSLTLQNDPQTLL 180
           PLINKEPHP+ N+SSIKRKNKV  V+SKRK KYQQGFVAYSPST PINS+TLQ+DPQTL 
Sbjct: 181 PLINKEPHPKMNKSSIKRKNKVLAVVSKRKRKYQQGFVAYSPSTVPINSMTLQDDPQTLP 240

Query: 181 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNL 214
           +NHSSRRQLKRESFH IP SYTELLSQLFQGNL
Sbjct: 241 NNHSSRRQLKRESFHSIPTSYTELLSQLFQGNL 260

[Close]

BLAST of Moc04g24430 vs. ExPASy TrEMBL
Match: A0A5A7UJ84 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00290 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.3e-22
Identity = 79/195 (40.51%), Postives = 100/195 (51.28%), Query Frame = 0


Query: 85  NLKGKEKENVTNGNAEGTAGKEYAQRWGEATEQLPMPLINKE-----------PHPETNR 144
           NL+  EK+NV          KEYAQRW E   Q+  PL +KE           P+ +   
Sbjct: 181 NLQRMEKKNV-------ETFKEYAQRWRELATQVQPPLTDKELMAMFINTLRAPYYDRMV 240

Query: 145 SSIKRKNKVQVVISKRKGKYQQGFVAYSPS-----TAPINSLTLQNDPQTLLDNHSSRRQ 204
            S+       + I +R     +    YSPS      +P    T +N          +R  
Sbjct: 241 GSVSINFSDVITIGER----IEFETNYSPSYQNRGKSPFGQATQRN----------ARNS 300

Query: 205 LKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHAGAVGHSTE 264
            K+  F PIP+SYTELL QL + + +A +P EPLQ  YPKWYDP V  +YHAGAVGHSTE
Sbjct: 301 WKQTYFDPIPMSYTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNVKREYHAGAVGHSTE 354

[Close]

BLAST of Moc04g24430 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-22
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 181 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHA 240
           +  ++R   K+  F PIP++YTELL QLFQ N LAP+PV+P+Q  YP+WYD     DYHA
Sbjct: 335 EQQTNRGARKQTQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPRWYDTNARCDYHA 394

Query: 241 GAVGHSTENCTSLKHKVQVLIKA 264
           GA+GHSTENCT+LK++VQ LIKA
Sbjct: 395 GAIGHSTENCTALKYRVQALIKA 417

[Close]

BLAST of Moc04g24430 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 181 DNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEPLQQSYPKWYDPQVHYDYHA 240
           +N S+R+Q     F PIP++YTELL QLFQ N LAP+PV+P+Q  YP WYD     DYHA
Sbjct: 440 NNRSTRKQ---SQFDPIPMTYTELLPQLFQNNQLAPVPVDPIQPPYPGWYDANXRCDYHA 499

Query: 241 GAVGHSTENCTSLKHKVQVLIKA 264
           GA+GHSTENCT+LK++VQ LIKA
Sbjct: 500 GAIGHSTENCTALKYRVQALIKA 519

[Close]

BLAST of Moc04g24430 vs. ExPASy TrEMBL
Match: A0A061DPM2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003960 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-21
Identity = 55/102 (53.92%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 162  PSTAPINSLTLQNDPQTLLDNHSSRRQLKRESFHPIPISYTELLSQLFQGNLLAPIPVEP 221
            P T P   +   N+P         +  L+R  F PIP+ YT LL QL +  LLA  P+EP
Sbjct: 928  PQTPPPRPVASTNNPGN--GQRGPKTTLERPKFDPIPVPYTTLLPQLIENRLLARTPLEP 987

Query: 222  LQQSYPKWYDPQVHYDYHAGAVGHSTENCTSLKHKVQVLIKA 264
            L+ S+PKWYDP  H DYH G  GHSTENCT+LKHKVQVLIKA
Sbjct: 988  LRPSFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQVLIKA 1027

The following BLAST results are available for this feature:

BLAST of Moc04g24430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153553.1	9.3e-88	80.28	uncharacterized protein LOC111021029 [Momordica charantia]	[more]
KAA0054657.1	6.8e-22	40.51	uncharacterized protein E6C27_scaffold24G004750 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_022158986.1	8.8e-22	60.24	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022155098.1	2.6e-21	62.65	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
EOX94372.1	3.4e-21	53.92	Uncharacterized protein TCM_003960 [Theobroma cacao]	[more]

BLAST of Moc04g24430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHS7	4.5e-88	80.28	uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7UJ84	3.3e-22	40.51	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1E2J7	4.3e-22	60.24	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1DM29	1.2e-21	62.65	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A061DPM2	1.6e-21	53.92	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003960 PE=4 SV=1	[more]

BLAST of Moc04g24430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24430.1	Moc04g24430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding