Moc04g24420 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24420
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transcription factor MYB34
Location	chr4: 17623828 .. 17625840 (-)
RNA-Seq Expression	Moc04g24420
Synteny	Moc04g24420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGATCTACGAGGATTGGAATATCTACTTGACAATGAGATAGAGCGCATTCTTCATCGCAGAAGAAGAGTACAATGTAGACAGCAAGTAGAAGTTTGGCCCTATGTATCAACATCCAAGAAATCCTAACTCTGTGGTTTCCAATCAGAAGTTGAAAGAAATAATGAGGACGAAGTTGTTGGGATAGCAGCAGTTCCTCCTTTAAATGCAATTCTGTTGGCTGACGACACAGAGAGAGCTATAAGAGCGTATGTCGCTCTAGAATCCTATGGCTTCAACCCAGTTATAGAAAAACCAAAAATTGAAGCAGAGACATTTGAGTTGAAACCAGTAATGTTCCAAATGCTCCAAACTGTGGGGAAATTTTACGGACATGCTTTTGATGACCCTCATCTCCATTTAAGGTACTTCATGAAGGTGAGTGATTCATTTAACATCCAAAGTGTATCCAAGGAAGCGTTGTGGCTGAAGTTATTTCCCTTTTCGTTGAGGGATGGCGCTCAAAATTGGTTAAATTCATTGCTCGCTGAATCCATTACATCATGAGATGACTTAGCTGGGAAATTTTTTATGAAGTATTTCCTTCCCAGCAAAAATGCAAAGTTCAAGAGTGAAATTAATAATTTCCAACTTAAAGCTTGGGAGACAATGAGTGAATCATGGGAAAGATTTAAAGAGCTATTGCGAAAATGCCCACAACATGGCTTGCTTAGGTGCATTAAGATTGAAACTTTTTGTAATGGACTTAATGAGGCTAGAAGATTGGTAGTAGATGCATAGGGAAATGGGGCTTTGTTAGATAAATCATATAATGAGGCATTTGATATTCTTGAAAGAATTTCTTCCAACAATCATCAATGGTCAGATTCAAGAGCTTCATCTGGAAAGAACTTGAAAAGAATACATGAGAATGATGTACTGACATCAATTACTACCCAAATTTCCAATTTGACTAACATGGTGAAGAACATGGTCGTTGCTGGAGCATTACCTGCTAACACTATAGAAGTTATTTCGTGCTAGATTGCTCCTAGTTATCATGTGATTAGAGTGAGCAAGTGTAGATGCATTCTCCTTGTTTATCTCCCGATGACCATTGAAATTATTGGAATTGTCTCCATAATTGGCTATTTGATGGGATTTACCTACAAGTTTAAAATCAAGGTTAATTGTCTCCTTGTTGCTGGTTGTGTTTCTGAGTTTTGCTTTTCTTCAATAGAAGAATGCATACTTTTTTCTTCATTTAGCTCATTCTTTCCTTCCCGAATAGAATAATCAAGCATGTTTTCAATAAATTCATGCTTATGGGGGCACAATGGTTGCTGCTAGGTTCTGTCCTACTTGTGCTGATCTTCTTACAAATGTTCTTTTTATCTTTGACTCAATTCCTCCATACCTGAAAAATTCAGTAATTGCAAGAGTTTGGGGATCCTCTTGTGTATTGTTAGTATTTCTATCAAAGGGAGAAATAATTTCATCAAAGATAACATGTCTTTAGATATAGATATGATTATTGGTGGGATCTAAACATCTATATCCTTTGTGTATAGGACTATAGCCAACAAAGACAAATGGTAGGTTCTTTTAGAGAACTTATCCTTGTTGGAGTTTTGTAAGTAGGGAAAACACTTGCATCCAAACACTTTTATACCACTATAATCTGGTTCTTTTTCAAATAATTTAAGGAATGAAGTTTGCATATTCAATAATGATAACTCTCCATAAGAGAGTGTTTTGTGGTATAATTTGGGCAATTTTGGTGTGTAAATGTGAGAGTCCTTATCAAAAGACCATGGAAAATAGAAGAAATCATTTAGTTAGGTCTCTGAGCTGTTAGAATTCTCAATTCCCTCATTTTTAATGAATTATACTTAATTATGGATGTTTTGTATAGGAATTGAAGAATTTGTTGAGGGCAAGCCAAGTGCTTCTAAAGTTGTGAAAGTGTTGCTAGAGGATGGCAGGGAGATGCATTTATGCTGCAGCATGAAGCCGCTTCAGATGCTTTAG

mRNA sequence

ATGCACGATCTACGAGGATTGGAATATCTACTTGACAATGAGATAGAGCGCATTCTTCATCGCAGAAGAAGAGTACAATTTGAAAGAAATAATGAGGACGAAGTTGTTGGGATAGCAGCAGTTCCTCCTTTAAATGCAATTCTGTTGGCTGACGACACAGAGAGAGCTATAAGAGCGTATGTCGCTCTAGAATCCTATGGCTTCAACCCAGTTATAGAAAAACCAAAAATTGAAGCAGAGACATTTGAGTTGAAACCAGTAATGTTCCAAATGCTCCAAACTGTGGGGAAATTTTACGGACATGCTTTTGATGACCCTCATCTCCATTTAAGGTACTTCATGAAGATTGCTCCTAGTTATCATGTGATTAGAGTGAGCAAGTGTAGATGCATTCTCCTTGTTTATCTCCCGATGACCATTGAAATTATTGGAATTGTCTCCATAATTGGCTATTTGATGGGATTTACCTACAAGTTTAAAATCAAGCTCATTCTTTCCTTCCCGAATAGAATAATCAAGCATGTTTTCAATAAATTCATGCTTATGGGGGCACAATGGTTGCTGCTAGGAATTGAAGAATTTGTTGAGGGCAAGCCAAGTGCTTCTAAAGTTGTGAAAGTGTTGCTAGAGGATGGCAGGGAGATGCATTTATGCTGCAGCATGAAGCCGCTTCAGATGCTTTAG

Coding sequence (CDS)

ATGCACGATCTACGAGGATTGGAATATCTACTTGACAATGAGATAGAGCGCATTCTTCATCGCAGAAGAAGAGTACAATTTGAAAGAAATAATGAGGACGAAGTTGTTGGGATAGCAGCAGTTCCTCCTTTAAATGCAATTCTGTTGGCTGACGACACAGAGAGAGCTATAAGAGCGTATGTCGCTCTAGAATCCTATGGCTTCAACCCAGTTATAGAAAAACCAAAAATTGAAGCAGAGACATTTGAGTTGAAACCAGTAATGTTCCAAATGCTCCAAACTGTGGGGAAATTTTACGGACATGCTTTTGATGACCCTCATCTCCATTTAAGGTACTTCATGAAGATTGCTCCTAGTTATCATGTGATTAGAGTGAGCAAGTGTAGATGCATTCTCCTTGTTTATCTCCCGATGACCATTGAAATTATTGGAATTGTCTCCATAATTGGCTATTTGATGGGATTTACCTACAAGTTTAAAATCAAGCTCATTCTTTCCTTCCCGAATAGAATAATCAAGCATGTTTTCAATAAATTCATGCTTATGGGGGCACAATGGTTGCTGCTAGGAATTGAAGAATTTGTTGAGGGCAAGCCAAGTGCTTCTAAAGTTGTGAAAGTGTTGCTAGAGGATGGCAGGGAGATGCATTTATGCTGCAGCATGAAGCCGCTTCAGATGCTTTAG

Protein sequence

MHDLRGLEYLLDNEIERILHRRRRVQFERNNEDEVVGIAAVPPLNAILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQMLQTVGKFYGHAFDDPHLHLRYFMKIAPSYHVIRVSKCRCILLVYLPMTIEIIGIVSIIGYLMGFTYKFKIKLILSFPNRIIKHVFNKFMLMGAQWLLLGIEEFVEGKPSASKVVKVLLEDGREMHLCCSMKPLQML

Homology

[Close]

BLAST of Moc04g24420 vs. NCBI nr
Match: XP_022153147.1 (probable serine/threonine-protein kinase PBL11 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-29
Identity = 89/173 (51.45%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 1   MHDLRGLEYLLDNEIE----RILHRRRRVQFERNNED----------EVVGIAAVPPLNA 60
           MHDL+ LEYLLDNEIE    R +  +RR Q E N  D          EVV  AA P LN 
Sbjct: 1   MHDLQRLEYLLDNEIECTFPRRIREQRRQQVETNPMDQLPRLPNPMVEVVVPAAAPTLNT 60

Query: 61  ILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQMLQTVGKFYGHAFDDP 120
           ILLADD ERAIRAY AL  + F+PVI  P+IEAE FELKPVMFQMLQTVGKF+G+  +D 
Sbjct: 61  ILLADDGERAIRAYAALVLHSFHPVIAGPEIEAERFELKPVMFQMLQTVGKFFGNPCEDS 120

Query: 121 HLHLRYFMKIAPSYH--------VIRVSKCRCILLVYLPMTIEIIGIVSIIGY 152
           HLHLRYF++I   Y+        V+  S  R +L       I+I+  +S   Y
Sbjct: 121 HLHLRYFLEIKNFYNGLSEATRLVVDASANRALLSKSYVEAIDILERISANNY 173

[Close]

BLAST of Moc04g24420 vs. NCBI nr
Match: XP_022158490.1 (uncharacterized protein LOC111024970 [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-25
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 31  NEDEVVGIAAVPPLNAILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQ 90
           NE EVV +AA PPLN ILL DD ER IRAY A   +GF+PVI  P IEAE FELK +MFQ
Sbjct: 16  NEGEVVVLAAAPPLNVILLVDDGERVIRAYAAPAIHGFHPVIAGPAIEAERFELKSIMFQ 75

Query: 91  MLQTVGKFYGHAFDDPHLHLRYFMKIAPSYHVIRVSK 128
           MLQTVG+F+G+  +DPHLHLRYF++++ S+++  VSK
Sbjct: 76  MLQTVGQFFGNPSEDPHLHLRYFLEVSDSFNMQEVSK 112

[Close]

BLAST of Moc04g24420 vs. NCBI nr
Match: XP_022158768.1 (uncharacterized protein LOC111025234 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-17
Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 24  RVQFERNNEDEVVGIAAVPPLNAILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFE 83
           +++ ER   D   G A  PPLNAILL DD E+ IRAY A   + FNPVI  P IEA+ FE
Sbjct: 12  KLKVERVQGDVAGGHALTPPLNAILLGDDIEQEIRAYAAPAFFDFNPVIVDPIIEADRFE 71

Query: 84  LKPVMFQMLQTVGKFYGHAFDDPHLHLRYFMKIAPS----YHVIRVSKCRCILLVYLPMT 143
           LKP MFQMLQ    F+G A +DP+ HL+YFM++A S      VI  S  + +LL +    
Sbjct: 72  LKPAMFQMLQI---FHGLASEDPYRHLQYFMQVANSSKVEEFVIDASSNKALLLKHYAEA 131

Query: 144 IEIIGIVS 148
            +I+  +S
Sbjct: 132 FDILEEIS 136

[Close]

BLAST of Moc04g24420 vs. NCBI nr
Match: XP_022929949.1 (uncharacterized protein LOC111436411 [Cucurbita moschata])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-16
Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 1   MHDLRGLEYLLDNEIERILHRR---RRVQFERNNEDEVVGIA-----AVPPL-------- 60
           M+   GLE++LD EIER   RR   ++   E+N +   +G         P +        
Sbjct: 1   MNPPTGLEFILDPEIERTFRRRLKKKKKMTEQNIQQIELGAQLNREFENPAMMANQERIT 60

Query: 61  -NAILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQMLQTVGKFYGHAF 120
            N I LADD ERAIRAY        NP I +P+I+  TFELKPVMFQMLQT+G+F+G   
Sbjct: 61  ANPIHLADDRERAIRAYAHPAVEELNPCIIRPEIQGTTFELKPVMFQMLQTIGQFHGLPL 120

[Close]

BLAST of Moc04g24420 vs. NCBI nr
Match: EXB92343.1 (Putative disease resistance RPP13-like protein 1 [Morus notabilis])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-16
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 9    YLLDNEIERILHRRRRVQ-----FERNNEDEVVGIA--------AVPPLNAILLADDTER 68
            +L D EIER L RRRR Q      +   E++  GI         A+ P     + DD +R
Sbjct: 1345 FLPDPEIERTLRRRRREQRGFAHIQEMAEEDAQGILLNQGQQLNALEPAQRPFVVDDRDR 1404

Query: 69   AIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQMLQTVGKFYGHAFDDPHLHLRYFMK 118
            AIR +      G NPVI +P IEA  FELKPVMFQMLQ VG+F G A DDPH HLR FM+
Sbjct: 1405 AIRDFAVPVLDGLNPVIVRPNIEAPHFELKPVMFQMLQIVGQFSGMATDDPHQHLRLFME 1464

[Close]

BLAST of Moc04g24420 vs. ExPASy TrEMBL
Match: A0A6J1DI54 (probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN=LOC111020716 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 89/173 (51.45%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 1   MHDLRGLEYLLDNEIE----RILHRRRRVQFERNNED----------EVVGIAAVPPLNA 60
           MHDL+ LEYLLDNEIE    R +  +RR Q E N  D          EVV  AA P LN 
Sbjct: 1   MHDLQRLEYLLDNEIECTFPRRIREQRRQQVETNPMDQLPRLPNPMVEVVVPAAAPTLNT 60

Query: 61  ILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQMLQTVGKFYGHAFDDP 120
           ILLADD ERAIRAY AL  + F+PVI  P+IEAE FELKPVMFQMLQTVGKF+G+  +D 
Sbjct: 61  ILLADDGERAIRAYAALVLHSFHPVIAGPEIEAERFELKPVMFQMLQTVGKFFGNPCEDS 120

Query: 121 HLHLRYFMKIAPSYH--------VIRVSKCRCILLVYLPMTIEIIGIVSIIGY 152
           HLHLRYF++I   Y+        V+  S  R +L       I+I+  +S   Y
Sbjct: 121 HLHLRYFLEIKNFYNGLSEATRLVVDASANRALLSKSYVEAIDILERISANNY 173

[Close]

BLAST of Moc04g24420 vs. ExPASy TrEMBL
Match: A0A6J1DVZ9 (uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024970 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.5e-26
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 31  NEDEVVGIAAVPPLNAILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQ 90
           NE EVV +AA PPLN ILL DD ER IRAY A   +GF+PVI  P IEAE FELK +MFQ
Sbjct: 16  NEGEVVVLAAAPPLNVILLVDDGERVIRAYAAPAIHGFHPVIAGPAIEAERFELKSIMFQ 75

Query: 91  MLQTVGKFYGHAFDDPHLHLRYFMKIAPSYHVIRVSK 128
           MLQTVG+F+G+  +DPHLHLRYF++++ S+++  VSK
Sbjct: 76  MLQTVGQFFGNPSEDPHLHLRYFLEVSDSFNMQEVSK 112

[Close]

BLAST of Moc04g24420 vs. ExPASy TrEMBL
Match: A0A6J1DX14 (uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025234 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 24  RVQFERNNEDEVVGIAAVPPLNAILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFE 83
           +++ ER   D   G A  PPLNAILL DD E+ IRAY A   + FNPVI  P IEA+ FE
Sbjct: 12  KLKVERVQGDVAGGHALTPPLNAILLGDDIEQEIRAYAAPAFFDFNPVIVDPIIEADRFE 71

Query: 84  LKPVMFQMLQTVGKFYGHAFDDPHLHLRYFMKIAPS----YHVIRVSKCRCILLVYLPMT 143
           LKP MFQMLQ    F+G A +DP+ HL+YFM++A S      VI  S  + +LL +    
Sbjct: 72  LKPAMFQMLQI---FHGLASEDPYRHLQYFMQVANSSKVEEFVIDASSNKALLLKHYAEA 131

Query: 144 IEIIGIVS 148
            +I+  +S
Sbjct: 132 FDILEEIS 136

[Close]

BLAST of Moc04g24420 vs. ExPASy TrEMBL
Match: W9RHB3 (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN=L484_000983 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.1e-17
Identity = 58/122 (47.54%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 9    YLLDNEIERILHRRRRVQ-----FERNNEDEVVGIA--------AVPPLNAILLADDTER 68
            +L D EIER L RRRR Q      +   E++  GI         A+ P     + DD +R
Sbjct: 1345 FLPDPEIERTLRRRRREQRGFAHIQEMAEEDAQGILLNQGQQLNALEPAQRPFVVDDRDR 1404

Query: 69   AIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQMLQTVGKFYGHAFDDPHLHLRYFMK 118
            AIR +      G NPVI +P IEA  FELKPVMFQMLQ VG+F G A DDPH HLR FM+
Sbjct: 1405 AIRDFAVPVLDGLNPVIVRPNIEAPHFELKPVMFQMLQIVGQFSGMATDDPHQHLRLFME 1464

[Close]

BLAST of Moc04g24420 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.1e-17
Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 1   MHDLRGLEYLLDNEIERILHRR---RRVQFERNNEDEVVGIA-----AVPPL-------- 60
           M+   GLE++LD EIER   RR   ++   E+N +   +G         P +        
Sbjct: 1   MNPPTGLEFILDPEIERTFRRRLKKKKKMTEQNIQQIELGAQLNREFENPAMMANQERIT 60

Query: 61  -NAILLADDTERAIRAYVALESYGFNPVIEKPKIEAETFELKPVMFQMLQTVGKFYGHAF 120
            N I LADD ERAIRAY        NP I +P+I+  TFELKPVMFQMLQT+G+F+G   
Sbjct: 61  ANPIHLADDRERAIRAYAHPAVEELNPCIIRPEIQGTTFELKPVMFQMLQTIGQFHGLPL 120

The following BLAST results are available for this feature:

BLAST of Moc04g24420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153147.1	3.8e-29	51.45	probable serine/threonine-protein kinase PBL11 [Momordica charantia]	[more]
XP_022158490.1	1.1e-25	62.89	uncharacterized protein LOC111024970 [Momordica charantia]	[more]
XP_022158768.1	5.6e-17	46.88	uncharacterized protein LOC111025234 [Momordica charantia]	[more]
XP_022929949.1	1.3e-16	43.07	uncharacterized protein LOC111436411 [Cucurbita moschata]	[more]
EXB92343.1	1.3e-16	47.54	Putative disease resistance RPP13-like protein 1 [Morus notabilis]	[more]

BLAST of Moc04g24420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DI54	1.8e-29	51.45	probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1DVZ9	5.5e-26	62.89	uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DX14	2.7e-17	46.88	uncharacterized protein LOC111025234 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
W9RHB3	6.1e-17	47.54	Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN...	[more]
A0A6J1EQ90	6.1e-17	43.07	uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]

BLAST of Moc04g24420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24420.1	Moc04g24420.1	mRNA