Moc04g24350 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24350
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr4: 17564189 .. 17567130 (-)
RNA-Seq Expression	Moc04g24350
Synteny	Moc04g24350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAAGAAAATCCTTCGATTTGGGGACAAGAGCCCTTCGGGCTACTTGATTGTGGAGGGAAGGAGAAGGAACGAGTATAGAGAATCGCTAGACGAACAACGGAATGGCGTCTTACTCGTCAACAGAAGGATTCGGCGGAAGGGATTGGGAGCATCGCGTGTTCTAGAGAGAAAGAAAGACACGGGTTTGCGGTGATGGTCTGTCTCGCGTGGCAATGGCGGCGTGGAGGTCGAAATCGCGCAACGGTGAATTGAAAATTAGGGATTTAGTGGGTTTTGAGAATTTTTTACAATGGGGAAAGGATTTTAGATATTACAAAATAATTTTTAAATTCCAAAAAAATGAATTTAAAAGATGTTTTTAGTTAATTTTAAATTTTTCCTCTAGTTTTTCTCTGTGTTTTGAAATTTATATACTTCAAAAAAAATTTCATTTTTTTCAAGATTTGTAATATATAAACATTCATTAAATCTTTTTGGATGGAAGGAAAAAAATCTATGAAAATTTTGGGTATTAAAATATATAGGTAAAATTAAAGAGTAAAAAAAAATTGCAATTACTTGGCCTTCAATAGTTAAATAATATTCTGAGTGCAAAATTTCGAATAAATTTTAGTCTTTTAGACTTTTATGTTTTCTTAACTTAAATTCCAACAAATTAGCTTAAAATATCAATTCCTTTATTTTTTTCTCCAGTTTTCTAATTTACAAATTTCGACAAAAATTTGTATTTTATTTTTCTTAAGATTTGCAATATCAGATTGCAATCCATGGTATTGAAAATGTAAGCATTAATTAAATCGTTCTGGATTGATGAAAAAAACAATGAAAAACTTAAATAATATTCTGAGAGCAAAATTTTGAATAAATTTTTGGCTTCTAAACTTTTATGTTTTCTTAACTTACATTCCAACAAATTAGCTTAAAATAGTTAAATTCTTTATTCTTTTCTCCAGTTTTGTAATTTATAAATTTCAACAAAAAATTGCATTTTTATTTTTCTTAAGATTTGCAATATCAAATTGCAATCCATTGTATTGAAAATGTAAGCATTATTTAAATCTTTTTGGATTGATGAAAAAAAATCCATGGAAAACTGACTTTAACACGAAAAGCAACTTTTAGTGACCTTTTATCAGATGTCACTAAAATACAGTTTTCCAACTTATAGTGACATATAAACAACGTCACGTAAATCATACCTTTTCACGAATAAGATTGGAATCCTCTTATCGTATCGTGACGATTATAAACCGTCACGAAAAATAATATTCTGTGACGTTTTATACACGTCATGAAAAGCCGCCAATCTGAAGAACTCCGTCTTTTCCCGCCAAAAACGCGCCTTAATGTGTTTAGTTTATGTTATGTCACCTTTACATTATTTGCAATTGTTTTTTCTTTATTTTACATCAACCAACCATCTTTCTTCAAACCTCCCTTTCGTTTAAGCACTACTATGATAGCACTTCGATTATTATTTACAAGGAATATTTCCTATTATTACATTGTTTTGATTGCGTGCACTTGCACATAGTTTAGCCCGTATCAATTGTCTATAACAAGTGGTGTCAAAGCCATGCTAAACCTAGCTGAATGGGAAAAATCCTTGAAGGTTGAACAAGAGATTAATGAACCTTGTAGTCATTGTTGGGATTGGTGGAGTCAAAACGACGTCGGATCGAGCTAGGGATGAGTTGGGATCAAGCCGGGATGCGTCGGGGTCTAAGAGGGGATGAAAAACAAGGAAGCGGGGCGCTGCAGGCCACTCGGGTCGCCACGGCACTGTCCTGATGGGTGGCGAGGGCTAACTCTTCCGTCCGTAGCGCCATGGCATCAGGGACAACGCCATGGCGCTGTTTAGATGTTTATAAATATTGCTGTTCGGGTTTAGGGTTTTGCAACCAAAAAAGGGTTATTGTCCAGCCGATTTTGAGCCATTTTTCAGAAGGTTTCATGGCTGTTTCAAGGGAGAGGCTCGGGCATTGGCAGAGGCATTGAGGCTCATCAAGATCAACATATCGGGGTAATTATATCTTAATTATTGTGAGTTTTTCATTTCTATTCCTAAGTATTAATTGTGTAAAATACTTAGAAGCTATAGGGCTTTTGTTGGTACCTCTAGGGGATATTTTTGGGGAGTGTTATCGTATCCAATCCTCAACAATATTAGTGAATTACCCACATCTGAATGGAAGATTGGACGTAGCCCTTAATGGTGAACCAGTATAATTTGCTGTGTCGTTTACTTATGCTTTACTGTTTTTCTTCCTATTTGTATATTCTTGGTTGTATTTGATATTTTCTGTGGAATAAGAAATTATACATGAGCTGTAGGGTTGCAGCATCATGAGAGACAAATATTTCGCACACCATTTCAGTTTTTTGGAAGATGTAGGTAAAGGATCTTCTTACATTCAAGAAGAAACACAAAACTTTAGGGGAGAGACCAGCAGGGATGACAGACAAGGATTGGAATGAGATGGATGAGCAGGCCGTTGCGAATATCTGAATGTCGTTGTCAATGAATGTTTGTAGTTGGTGGCGAAAGAGACTATAACAAAAGAATTATTGAAGGTCTTGCAAGACAGGTATAAAAAACCTTCTGCCAATACAAAAATACTTCTACGGACGAAGTATTTTAATATCCACACGGAGGAGGGAACCTCGATGAATTCCCACATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGTGATGGGTGTCAAGATTGAGGAAGAGGTGAAAGCTATGAGGCTGATGACGTCTTTGCCTGACAGTTGGGAGACGATGAAGACCACGGTGTCAAATTCGCTAGGGGAAAATAGCTTGAAATTTTTAGCTATTTGTGATGCCGCCTTATCTGAAGAAGCCCAGAGAAAATTAGAGAAAAAGTCTACATCTACTTCAGGGGCAGAAAACGGGGTTGAATAA

mRNA sequence

ATGGGAGGAAAGAAAATCCTTCGATTTGGGGACAAGAGCCCTTCGGGCTACTTGATTGTGGAGGGAAGGAGAAGGAACGAGTATAGAGAATCGCTAGACGAACAACGGAATGGCGTCTTACTCGTCAACAGAAGGATTCGGCGGAAGGGATTGGGAGCATCGCGTGTTCTAGAGAGAAAGAAAGACACGGGTTTGCGGGTTTTGCAACCAAAAAAGGGTTATTGTCCAGCCGATTTTGAGCCATTTTTCAGAAGGTTTCATGGCTGTTTCAAGGGAGAGGCTCGGGCATTGGCAGAGGCATTGAGGCTCATCAAGATCAACATATCGGGGTATAAAAAACCTTCTGCCAATACAAAAATACTTCTACGGACGAAGTATTTTAATATCCACACGGAGGAGGGAACCTCGATGAATTCCCACATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGTGATGGGTGTCAAGATTGAGGAAGAGGTGAAAGCTATGAGGCTGATGACGTCTTTGCCTGACAGTTGGGAGACGATGAAGACCACGGTGTCAAATTCGCTAGGGGAAAATAGCTTGAAATTTTTAGCTATTTGTGATGCCGCCTTATCTGAAGAAGCCCAGAGAAAATTAGAGAAAAAGTCTACATCTACTTCAGGGGCAGAAAACGGGGTTGAATAA

Coding sequence (CDS)

ATGGGAGGAAAGAAAATCCTTCGATTTGGGGACAAGAGCCCTTCGGGCTACTTGATTGTGGAGGGAAGGAGAAGGAACGAGTATAGAGAATCGCTAGACGAACAACGGAATGGCGTCTTACTCGTCAACAGAAGGATTCGGCGGAAGGGATTGGGAGCATCGCGTGTTCTAGAGAGAAAGAAAGACACGGGTTTGCGGGTTTTGCAACCAAAAAAGGGTTATTGTCCAGCCGATTTTGAGCCATTTTTCAGAAGGTTTCATGGCTGTTTCAAGGGAGAGGCTCGGGCATTGGCAGAGGCATTGAGGCTCATCAAGATCAACATATCGGGGTATAAAAAACCTTCTGCCAATACAAAAATACTTCTACGGACGAAGTATTTTAATATCCACACGGAGGAGGGAACCTCGATGAATTCCCACATTAATGAGCTCACCGATATCTTGAACAAATTAGAAGTGATGGGTGTCAAGATTGAGGAAGAGGTGAAAGCTATGAGGCTGATGACGTCTTTGCCTGACAGTTGGGAGACGATGAAGACCACGGTGTCAAATTCGCTAGGGGAAAATAGCTTGAAATTTTTAGCTATTTGTGATGCCGCCTTATCTGAAGAAGCCCAGAGAAAATTAGAGAAAAAGTCTACATCTACTTCAGGGGCAGAAAACGGGGTTGAATAA

Protein sequence

MGGKKILRFGDKSPSGYLIVEGRRRNEYRESLDEQRNGVLLVNRRIRRKGLGASRVLERKKDTGLRVLQPKKGYCPADFEPFFRRFHGCFKGEARALAEALRLIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEVKAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAENGVE

Homology

[Close]

BLAST of Moc04g24350 vs. NCBI nr
Match: KAG7593230.1 (Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-16
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ ++EV
Sbjct: 83  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEV 142

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  VSNS+G   LKF+ + D  L EE  R+++   TSTS A N
Sbjct: 143 RALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEV-RRIDTGETSTSSAFN 200

[Close]

BLAST of Moc04g24350 vs. NCBI nr
Match: KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-16
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ ++EV
Sbjct: 83  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEV 142

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  VSNS+G   LKF+ + D  L EE  R+++   TSTS A N
Sbjct: 143 RALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEV-RRIDTGETSTSSAFN 200

[Close]

BLAST of Moc04g24350 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-15
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ ++EV
Sbjct: 83  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEV 142

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  VSNS+G   LKF+ + D  L EE  R+++   TS S A N
Sbjct: 143 RALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEV-RRIDTGETSMSSAFN 200

[Close]

BLAST of Moc04g24350 vs. NCBI nr
Match: VDD56318.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-15
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ E+EV
Sbjct: 432 LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGCLVAAHVNEFNTIVNQLSSVEIEFEDEV 491

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  VSN +G   LKF  + D  L+EE  R+++    STS A N
Sbjct: 492 RALILLASLPNSWEPMRAAVSNFVGTQKLKFNDVKDRILAEEV-RRIDSGEASTSSAFN 549

[Close]

BLAST of Moc04g24350 vs. NCBI nr
Match: TKS02399.1 (hypothetical protein D5086_0000163470 [Populus alba])

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-14
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 111 YKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEVKAMRLMTS 170
           Y+KPSAN K+ L  K FN+   E TS+  H+N    I N+L  + ++ ++E++A+ L+ S
Sbjct: 91  YEKPSANNKVHLMKKLFNLKMVENTSVTQHLNNFNTITNQLSSVEIEFDDEIRALILLAS 150

Query: 171 LPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           LP SWE M+T VSNS G++ LK+  I D  L+EE +RK   +S+S+  A N
Sbjct: 151 LPSSWEGMRTAVSNSAGKSKLKYDDIRDLILAEEVRRKDSGESSSSGSALN 201

[Close]

BLAST of Moc04g24350 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.9e-09
Identity = 33/98 (33.67%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 111 YKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEVKAMRLMTS 170
           Y   +   K+ L+ + + +H  EGT+  SH+N    ++ +L  +GVKIEEE KA+ L+ S
Sbjct: 92  YMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNS 151

Query: 171 LPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRK 209
           LP S++ + TT+ +  G+ +++   +  A L  E  RK
Sbjct: 152 LPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRK 187

[Close]

BLAST of Moc04g24350 vs. ExPASy TrEMBL
Match: A0A0D3AEM1 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN+K+ L  K F++  EEG  + +HINE   I+N+L  + ++ E+EV
Sbjct: 83  LMKVLSDMYEKPSANSKVFLMKKLFHLKMEEGGLVTAHINEFNTIVNQLSSVEIEFEDEV 142

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE+M+  VSNS+G   LKF  + D  L+EE  R+++    STS A N
Sbjct: 143 RALILLASLPNSWESMRVAVSNSVGTQKLKFNDVRDRILAEEV-RRIDSGEASTSSAFN 200

[Close]

BLAST of Moc04g24350 vs. ExPASy TrEMBL
Match: A0A0D3CS45 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.6e-16
Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ E+EV
Sbjct: 83  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFEDEV 142

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  VSNS+G   LKF  + D  L+EE  R+++    STS A N
Sbjct: 143 RALILLASLPNSWEPMRAAVSNSVGTQKLKFNDVRDRILAEEV-RRIDSGEASTSSAFN 200

[Close]

BLAST of Moc04g24350 vs. ExPASy TrEMBL
Match: A0A0D3BM55 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ ++EV
Sbjct: 60  LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFDDEV 119

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  VSNS+G   LKF  + D  L+EE  R+++    STS A N
Sbjct: 120 RALILLASLPNSWEPMRAAVSNSVGTQKLKFNDVRDRILAEEV-RRIDSGEASTSSAFN 177

[Close]

BLAST of Moc04g24350 vs. ExPASy TrEMBL
Match: A0A3P6FTI2 (Abhydrolase_3 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC8T49547H PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-15
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPSAN K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ E+EV
Sbjct: 432 LMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGCLVAAHVNEFNTIVNQLSSVEIEFEDEV 491

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  VSN +G   LKF  + D  L+EE  R+++    STS A N
Sbjct: 492 RALILLASLPNSWEPMRAAVSNFVGTQKLKFNDVKDRILAEEV-RRIDSGEASTSSAFN 549

[Close]

BLAST of Moc04g24350 vs. ExPASy TrEMBL
Match: A0A0D3DMW7 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-15
Identity = 49/119 (41.18%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 103 LIKINISGYKKPSANTKILLRTKYFNIHTEEGTSMNSHINELTDILNKLEVMGVKIEEEV 162
           L+K+    Y+KPS N K+ L  K F++  EEG  + +H+NE   I+N+L  + ++ ++EV
Sbjct: 84  LMKVLSDMYEKPSVNNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFDDEV 143

Query: 163 KAMRLMTSLPDSWETMKTTVSNSLGENSLKFLAICDAALSEEAQRKLEKKSTSTSGAEN 222
           +A+ L+ SLP+SWE M+  V+NS+G   LKF  + D  L+EE  R+++   TSTS A N
Sbjct: 144 RALILLASLPNSWEPMRAAVNNSVGTQKLKFNDVRDRILAEEV-RRIDSGETSTSSAFN 201

The following BLAST results are available for this feature:

BLAST of Moc04g24350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7593230.1	2.8e-16	42.86	Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7561662.1	3.6e-16	42.86	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7584790.1	1.4e-15	42.02	Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
VDD56318.1	5.2e-15	42.02	unnamed protein product [Brassica oleracea]	[more]
TKS02399.1	1.2e-14	43.24	hypothetical protein D5086_0000163470 [Populus alba]	[more]

BLAST of Moc04g24350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.9e-09	33.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc04g24350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D3AEM1	1.3e-16	43.70	CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376...	[more]
A0A0D3CS45	6.6e-16	42.86	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
A0A0D3BM55	1.5e-15	42.02	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
A0A3P6FTI2	2.5e-15	42.02	Abhydrolase_3 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC8T49...	[more]
A0A0D3DMW7	2.5e-15	41.18	CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376...	[more]

BLAST of Moc04g24350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 110..208 e-value: 2.8E-20 score: 72.5
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 111..217
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 111..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24350.1	Moc04g24350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0004672	protein kinase activity