Moc04g24340 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g24340
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	cinnamoyl-CoA reductase-like SNL6
Location	chr4: 17562673 .. 17563561 (-)
RNA-Seq Expression	Moc04g24340
Synteny	Moc04g24340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGAGTAGCTACAGATAGTTCAGGACGAGACCTTAAAGGACCAACAACATTGATGGCCAGAACAGATCAGAAAAACTTGCCATCAGCTCACGTTAAACAGTTGAGAAGTACAGAAAAGGGAAACGAGAATTTGATAGGCCATCAAGTTCATACCTCAGCTGTCAGACGTTCAGGAGAGCTGGTGAAGTCGCATAGGCGAATTAGTGCATTTAAAGGTACGGGTTTTGTTTCTAGTGTGGTGACAGACTTGGGTGGAAGTGCCAAGTCATCAGGGGAATCTTCCTTTAAAGGTCGTTGGGTTCAATCGAGAAAGGAAGCAACGGGGACCACTTAGATCAAGTGGGAGTATGTGGCTATGTCTCTAAGTTTGGGGGACGATACCACGTAGACCTGTCCAGTCTCAGGGCAGAGTCAGACAATACTTGGGTAGGGCCAAGCAGTGTGGATCAGTTCATTGATAGATTAGTCAGAACTGTGCCTTGACAGAGGGTGTCAAGAAGTTGATGGGACACTATCGTTGTAATGGGAAGCAGAGAATTGTCGCTTTGTCTCAAAGTGGGAGATTGTTGGGATTGGTGGAGTCAAAATGATGTCGGATCAAGCTAGGGATGAGTCGGGATCGAGCCGGGACGCGTCGAGGTCGAAGCGAGGATGAAAGACAGGGGAGCGGGGCGCTGCAGGCCACTCAGGTCGAGAAGACAGCCCTGCGGCGCCGCTACAAGGTGCCACGGTGCTATCCTGATGGGTGGTGCGGGCGGACTCTTCCGTCCATAGCGCCATGGCGTTGGGGACAGCGTCATGGCGCTATCTCGATGTTTATAAATACTGTTGTTCGGGATTATGGTTTTGAAGCTGAAAAAGGGTTATTATCCAGCCGATTTTAA

mRNA sequence

ATGCACAGAGTAGCTACAGATAGTTCAGGACGAGACCTTAAAGGACCAACAACATTGATGGCCAGAACAGATCAGAAAAACTTGCCATCAGCTCACGTTAAACAGTTGAGAAGTACAGAAAAGGGAAACGAGAATTTGATAGGCCATCAAGTTCATACCTCAGCTGTCAGACGTTCAGGAGAGCTGGTGAAGTCGCATAGGCGAATTAGTGCATTTAAAGGTACGGGTTTTGTTTCTAGTGTGGTGACAGACTTGGGTGGAAGTGCCAAGTCATCAGGGGAATCTTCCTTTAAAGGGATGAGTCGGGATCGAGCCGGGACGCGTCGAGGTCGAAGCGAGGATGAAAGACAGGGGAGCGGGGCGCTGCAGGCCACTCAGGTCGAGAAGACAGCCCTGCGGCGCCGCTACAAGGTGCCACGGTGCTATCCTGATGGGTGGTGCGGGCGGACTCTTCCGTCCATAGCGCCATGGCGTTGGGGACAGCGTCATGGCGCTATCTCGATGTTTATAAATACTGTTGTTCGGGATTATGGTTTTGAAGCTGAAAAAGGGTTATTATCCAGCCGATTTTAA

Coding sequence (CDS)

ATGCACAGAGTAGCTACAGATAGTTCAGGACGAGACCTTAAAGGACCAACAACATTGATGGCCAGAACAGATCAGAAAAACTTGCCATCAGCTCACGTTAAACAGTTGAGAAGTACAGAAAAGGGAAACGAGAATTTGATAGGCCATCAAGTTCATACCTCAGCTGTCAGACGTTCAGGAGAGCTGGTGAAGTCGCATAGGCGAATTAGTGCATTTAAAGGTACGGGTTTTGTTTCTAGTGTGGTGACAGACTTGGGTGGAAGTGCCAAGTCATCAGGGGAATCTTCCTTTAAAGGGATGAGTCGGGATCGAGCCGGGACGCGTCGAGGTCGAAGCGAGGATGAAAGACAGGGGAGCGGGGCGCTGCAGGCCACTCAGGTCGAGAAGACAGCCCTGCGGCGCCGCTACAAGGTGCCACGGTGCTATCCTGATGGGTGGTGCGGGCGGACTCTTCCGTCCATAGCGCCATGGCGTTGGGGACAGCGTCATGGCGCTATCTCGATGTTTATAAATACTGTTGTTCGGGATTATGGTTTTGAAGCTGAAAAAGGGTTATTATCCAGCCGATTTTAA

Protein sequence

MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSGELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFKGMSRDRAGTRRGRSEDERQGSGALQATQVEKTALRRRYKVPRCYPDGWCGRTLPSIAPWRWGQRHGAISMFINTVVRDYGFEAEKGLLSSRF

Homology

[Close]

BLAST of Moc04g24340 vs. NCBI nr
Match: XP_022157059.1 (uncharacterized protein LOC111023870 [Momordica charantia])

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-45
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 60
           MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG
Sbjct: 59  MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 118

Query: 61  ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFKGMSRDRA 106
           ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFKG   D+A
Sbjct: 119 ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFKGRWTDKA 163

[Close]

BLAST of Moc04g24340 vs. NCBI nr
Match: XP_022152155.1 (cinnamoyl-CoA reductase-like SNL6 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 5.9e-28
Identity = 73/98 (74.49%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 60
           MH+V    S R L+ P  LMA+TDQKNLPS  VKQLRST+KGNENLIGH+VHTSAVR  G
Sbjct: 28  MHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVKQLRSTKKGNENLIGHRVHTSAVRCLG 87

Query: 61  ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFK 99
           ELVKSHRRISA KGTG +SSV T L GSAKSSGESSF+
Sbjct: 88  ELVKSHRRISALKGTGSISSVATYLSGSAKSSGESSFR 125

[Close]

BLAST of Moc04g24340 vs. ExPASy TrEMBL
Match: A0A6J1DVE9 (uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023870 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 60
           MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG
Sbjct: 59  MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 118

Query: 61  ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFKGMSRDRA 106
           ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFKG   D+A
Sbjct: 119 ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFKGRWTDKA 163

[Close]

BLAST of Moc04g24340 vs. ExPASy TrEMBL
Match: A0A6J1DD48 (cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.9e-28
Identity = 73/98 (74.49%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 60
           MH+V    S R L+ P  LMA+TDQKNLPS  VKQLRST+KGNENLIGH+VHTSAVR  G
Sbjct: 28  MHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVKQLRSTKKGNENLIGHRVHTSAVRCLG 87

Query: 61  ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFK 99
           ELVKSHRRISA KGTG +SSV T L GSAKSSGESSF+
Sbjct: 88  ELVKSHRRISALKGTGSISSVATYLSGSAKSSGESSFR 125

The following BLAST results are available for this feature:

BLAST of Moc04g24340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157059.1	5.3e-45	96.19	uncharacterized protein LOC111023870 [Momordica charantia]	[more]
XP_022152155.1	5.9e-28	74.49	cinnamoyl-CoA reductase-like SNL6 [Momordica charantia]	[more]

BLAST of Moc04g24340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g24340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVE9	2.6e-45	96.19	uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DD48	2.9e-28	74.49	cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944...	[more]

BLAST of Moc04g24340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g24340.1	Moc04g24340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity