Moc04g19030 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g19030
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr4: 13931292 .. 13933801 (-)
RNA-Seq Expression	Moc04g19030
Synteny	Moc04g19030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTAGGGGAATTTGAAACAGTGGCCCTTACCAAAGAGTGTAGTGCCATTTTGACAGGAAAACTTGCTCAAAAGATGGGAGACCTAGGAAGCTTCACCATTCTTGTATCCATAGAAGGTAAGAATGTGGGGTCATGCACTATGTGACTTAGGGGCAAGTATAAACCTCATGTCTCTGTTGGTTTATCAGAAACTGGGGATTGGAGAAGTAAGGCCTACTACGGTTACCCTACAGTTGGCTGATAGGTCTATTACACATCCAGAGGGCAAGATTGAAGATGTTTTGGTGCAGGTGGATAAATTTATCTTTCCAGCTGATTTCATTATATTGGACTATGAAGCTGATAAGGAGATTCCAATCATTTTGGGAAGACCCTTTTTATCCACTAGTAGAGCTTTAATAGATGTCCAAAATGGAGAATTAACTATAAGAGTAAACGACCAACAGGTGACATATTCTGGTTTTAATACTATTAAGTTTCCTGCTGATGTGGAAGAGTGTTCTCTTTTAAGGCTTGCAGATGATTTGTTGAGTGAAGAATTACAAATAGAGGAGCTCCTAAACCAGTTAACAGAAGAGCTATGCATAGTTTTTGAAGCTGAAGATAACGAAGCCAAGTTGAGTCAATCTGTTGAGAGTAGAGTACAACCAGAGGGAATATTAGAAAGGGCATTTGAATCATTGGAGTTAGAGGACAGTGATCAAGAGCCGTTGAAGCCATCTGTGGAAAAAGCTCATAAGTTGGAACTGAAAACTTTGCCAATCCACTTGAAGTATGATTATTTTGATAAAAATGAAACATTGTCCATCATCATTACAGCATACTTGGTTGAAAAAGAAGAATCCCAATTGCTAGCAGTGTTGAAGAACCATAAAAAAACTATTGGGTGGATGTTGGCAGACATAAAGGGAATCAGTCCAAGCTACTGTATGCACAAAATTAATCTGGAAGAAGGATGTAAGAATTCTGTGGAGCATTGGAGGAAACTCAATCCTGCTATGAAGGAAATAGTCAAGAAAGAAATCATTAAGTGGCTAGATGCTGGAATAATCTATCCCATAGCTGATAGTGGTTTGGTGAGCCCAGTCGAATGTGTGCCTAAAAACCGGGGGGGGGGGGGATTACAGTGGTGCCTAATGATAACAACGAACTAATTCCAACAAGAACAGTCACGGGTTGGCGGATTTGCATGGATTACAGGAAGTTAAACAAGGCAACCAAGAAGGACTACTTCCCACTGTCATTTATTTATAAAATACTAGACTGCCTGGTTGGACAAGAATACTACTACTTTTTGGATGGATACAGTGGCTACAACCAAATCACCATTGCCCCTCATGATCAACAGAAGACTACTTTCACTTGTCCATATGAAACCTTTGCATTTAGAAGGATGCCATTTGGATTGTGCAATGCTCTAGCAACGTTTTAGCACTGCATGATGGCAATCTTCTCAGATTTAATTGAAACAGTGGTGGAAGTTTTCATGGATGATTTCTCAGTTTTTGGGAGAACTTTTGGTGAATGCTTGGTTAATTTAGAAAAAGTGTTGAAGAGGTGTGAGGACACCAACTTGGTTCTCAACTGGGAGAAGTGTCACTTTATGGTCCAAAAAGGAATTGTGTTAGGTCACAGGGTATCCAAGAACATAATAGAAGTAAACAAAGCCAAGATTGAAGTGATAAAGAAGCTACCACCACCCACAACAGTCAAGGTAATTTGGAGTTTCCTAGGACACGCTGGTTTTTACAGAAGATTCATTAAAGATTTCTCTAAAATCTCTAAACTTTTGTGTTCTTTGTTGGAAAACAATATAATCTTTGATTTCTCTTCTAATTGCTTGCAGGCTTTTAATACTTTAAAAGAAGCGTTCATCAAAGCCCCTATCATGACAGCGCCAGACTGAAAGAAGCCATTCAAAGTTATGTGCGATGCTAGTGATTATGCTGTGAGAGCTATGTTGGGGCAAAGAAAAGGCAGATTGATTCACCCTATTTATTATGCCAGCAAAACCTTGGTGGAGGCTCAATTAAATTACACAACCACGGAGAATGAACTTCTAGCAGTGGTATTTTACTTTTGAGAAATTCAGAGCCTACCTGGTTGGAACTAAAGTGGTAGTCTACACTGATCACGCAGCTATCAAGTATTTGTTGGCTAAAAAGGATGTTAAACCAAGACTGATAAGATGGGTGCTGCTTCTACAAGAATTCGAATGCTCCTAAAAGTATGTGGTAGATTGTGTTGACATTTATCCATAATCCTTATTGCTTATTGCTTGAATATTGGATTATTGATATTTAATGTTAATGTTTATCAAATTGATTGATTCGTAAATTTATCCAAATTTCTTGATTCTTTGATAAATTTAAAGTCTTGAATTTTTGGTTATTTAGATGATTGTTATTTTGATAATTATGGTCATTGATAGTTTGATATATTTTATTTGAACAAGTTTGTTTTATTGAGTTTTATGTCTTTTACAGGAGAATCTTCTTTGGATGA

mRNA sequence

ATGAGATTAGGGGAATTTGAAACAGTGGCCCTTACCAAAGAGTGTAGTGCCATTTTGACAGGAAAACTTGCTCAAAAGATGGGAGACCTAGGAAGCTTCACCATTCTTGTATCCATAGAAGATGATTTGTTGAGTGAAGAATTACAAATAGAGGAGCTCCTAAACCAGTTAACAGAAGAGCTATGCATAGTTTTTGAAGCTGAAGATAACGAAGCCAAGTTGAGTCAATCTGTTGAGAGTAGAGTACAACCAGAGGGAATATTAGAAAGGGCATTTGAATCATTGGAGTTAGAGGACAGTGATCAAGAGCCGTTGAAGCCATCTGTGGAAAAAGCTCATAAGTTGGAACTGAAAACTTTGCCAATCCACTTGAAGAGAATCTTCTTTGGATGA

Coding sequence (CDS)

ATGAGATTAGGGGAATTTGAAACAGTGGCCCTTACCAAAGAGTGTAGTGCCATTTTGACAGGAAAACTTGCTCAAAAGATGGGAGACCTAGGAAGCTTCACCATTCTTGTATCCATAGAAGATGATTTGTTGAGTGAAGAATTACAAATAGAGGAGCTCCTAAACCAGTTAACAGAAGAGCTATGCATAGTTTTTGAAGCTGAAGATAACGAAGCCAAGTTGAGTCAATCTGTTGAGAGTAGAGTACAACCAGAGGGAATATTAGAAAGGGCATTTGAATCATTGGAGTTAGAGGACAGTGATCAAGAGCCGTTGAAGCCATCTGTGGAAAAAGCTCATAAGTTGGAACTGAAAACTTTGCCAATCCACTTGAAGAGAATCTTCTTTGGATGA

Protein sequence

MRLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIEDDLLSEELQIEELLNQLTEELCIVFEAEDNEAKLSQSVESRVQPEGILERAFESLELEDSDQEPLKPSVEKAHKLELKTLPIHLKRIFFG

Homology

[Close]

BLAST of Moc04g19030 vs. NCBI nr
Match: XP_022147186.1 (uncharacterized protein LOC111016198 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-13
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 36  LVSIEDDLLSEELQIEELLNQLTEELCIVFEAEDNEAKLSQSVESRVQPEGILERAFESL 95
           L+ + DDL SEE+Q EELL+QL EE+  +FE ++ EAKL Q   +    + + ++AFES 
Sbjct: 144 LLRLADDLRSEEMQTEELLDQLEEEITKIFEEKEKEAKLIQGRPNEASSDRVYKKAFESS 203

Query: 96  ELEDSDQEPLKPSVEKAHKLELKTLPIHLKRIFFG 131
           EL+D +Q  L+ SVEKA KLELK LP HLK  + G
Sbjct: 204 ELKDREQASLQSSVEKASKLELKVLPTHLKYAYLG 238

[Close]

BLAST of Moc04g19030 vs. NCBI nr
Match: XP_022152112.1 (uncharacterized protein LOC111019902 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-09
Identity = 50/122 (40.98%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 2   RLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIED-------------------- 61
           RLGEFETVA TKECSAIL GKL QKMGD GSFTI +SI                      
Sbjct: 63  RLGEFETVAFTKECSAILIGKLPQKMGDTGSFTIPISIGRKNVGHAPGDLGASINLMPLS 122

Query: 62  ------------------------------DLLSEELQIEELLNQLTEELCIVFEAEDNE 74
                                          LL++E+Q+EELL+QL +EL I+FE E+ E
Sbjct: 123 VYQKLGIEKARPTTVILQLADRLITHPEGLQLLTKEMQVEELLDQLEDELRIIFEVEEKE 182

[Close]

BLAST of Moc04g19030 vs. NCBI nr
Match: XP_022157452.1 (uncharacterized protein LOC111024147 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-08
Identity = 66/181 (36.46%), Postives = 83/181 (45.86%), Query Frame = 0


Query: 2   RLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIEDDLLSE---ELQIEELLNQLT 61
           RLGEFETV LTKEC  ILT K+ QKM D GSFTI VSI    + +   +L     L  LT
Sbjct: 144 RLGEFETVCLTKECRTILTSKIPQKMKDSGSFTIPVSIGGHKIGQALCDLGASINLVPLT 203

Query: 62  -----------------EELCIV----FEAEDN-------------------EAKLSQ-- 121
                            EE+ I+    F A+ N                   EA L +  
Sbjct: 204 VYQKLGMGAVKPMTVTHEEVPIILGRPFLAKGNALVDVHKGVVTMRNKNLELEAMLQKAE 263

Query: 122 -------SVESRVQPEGILERAFESLELEDSDQEPLKPSVEKAHKLELKTLPIHLKRIFF 131
                  S++   +      R  E L+LE+ +Q+ LKPSVE+  KLELK LP HLK  + 
Sbjct: 264 DFYYEVFSIDGGKEITNSWSRTHEDLKLEEVNQKQLKPSVEEPPKLELKALPQHLKYAYL 323

[Close]

BLAST of Moc04g19030 vs. NCBI nr
Match: KAA3458760.1 (Integrase, catalytic core [Gossypium australe])

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-07
Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 2   RLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIEDDLLSEELQIEELLNQLTEEL 61
           RLGEFE+ ALT+ C+ +L  KL  K+ DLGSFTIL S      +EE  +   +    E  
Sbjct: 112 RLGEFESTALTEGCTVMLMNKLPPKLKDLGSFTILFSNHYVDENEEFHVIGFIEIAVEVE 171

Query: 62  CIVFEAED-----------NEAKLSQSVESRVQPEGILER---AFESLELEDSDQEPLKP 121
              F  ++           NEA +++ +   ++ + + +R   +F+ L+L     +P +P
Sbjct: 172 FAKFYHKNSDNDDTDPFKLNEANMTKELGEFMETKRLEDRLGNSFKYLDLSTRSFKPPRP 231

Query: 122 SVEKAHKLELKTLPIHLKRIFFG 131
           S+E+   LELK+LP HLK  + G
Sbjct: 232 SIEEPPTLELKSLPFHLKYAYLG 254

[Close]

BLAST of Moc04g19030 vs. NCBI nr
Match: XP_012453456.1 (PREDICTED: uncharacterized protein LOC105775492 [Gossypium raimondii])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 59/189 (31.22%), Postives = 84/189 (44.44%), Query Frame = 0


Query: 2   RLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIEDDLLSEEL-QIEELLNQL--- 61
           RLGEFETVALT+EC A+L  KL  K+ + GSFTIL SIE+  +S+ L  + E +N +   
Sbjct: 17  RLGEFETVALTEECIAMLMNKLPLKLKEPGSFTILCSIENHYVSKSLCDLGESINLIPIS 76

Query: 62  -----------------------------TEELC----------------IVFEAEDNEA 121
                                        T+E C                  +   DNE 
Sbjct: 77  ILKKLEIGKTRPTTIMLQLVDCSYAHAEDTDEYCYAIGIIDTIVKEELVEFCYNNCDNET 136

Query: 122 KLSQSVESRVQPE--GILE---------RAFESLELEDSDQEPLKPSVEKAHKLELKTLP 131
              +  E  V  E  G++E         R+F+SL   +   +P +PS++    LELK LP
Sbjct: 137 DSVELNEEEVIEELSGLMEAKQMENGARRSFKSLNFLERSFKPPRPSIKDPPTLELKPLP 196

[Close]

BLAST of Moc04g19030 vs. ExPASy TrEMBL
Match: A0A6J1D1L0 (uncharacterized protein LOC111016198 OS=Momordica charantia OX=3673 GN=LOC111016198 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 36  LVSIEDDLLSEELQIEELLNQLTEELCIVFEAEDNEAKLSQSVESRVQPEGILERAFESL 95
           L+ + DDL SEE+Q EELL+QL EE+  +FE ++ EAKL Q   +    + + ++AFES 
Sbjct: 144 LLRLADDLRSEEMQTEELLDQLEEEITKIFEEKEKEAKLIQGRPNEASSDRVYKKAFESS 203

Query: 96  ELEDSDQEPLKPSVEKAHKLELKTLPIHLKRIFFG 131
           EL+D +Q  L+ SVEKA KLELK LP HLK  + G
Sbjct: 204 ELKDREQASLQSSVEKASKLELKVLPTHLKYAYLG 238

[Close]

BLAST of Moc04g19030 vs. ExPASy TrEMBL
Match: A0A6J1DFB0 (uncharacterized protein LOC111019902 OS=Momordica charantia OX=3673 GN=LOC111019902 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.2e-10
Identity = 50/122 (40.98%), Postives = 60/122 (49.18%), Query Frame = 0


Query: 2   RLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIED-------------------- 61
           RLGEFETVA TKECSAIL GKL QKMGD GSFTI +SI                      
Sbjct: 63  RLGEFETVAFTKECSAILIGKLPQKMGDTGSFTIPISIGRKNVGHAPGDLGASINLMPLS 122

Query: 62  ------------------------------DLLSEELQIEELLNQLTEELCIVFEAEDNE 74
                                          LL++E+Q+EELL+QL +EL I+FE E+ E
Sbjct: 123 VYQKLGIEKARPTTVILQLADRLITHPEGLQLLTKEMQVEELLDQLEDELRIIFEVEEKE 182

[Close]

BLAST of Moc04g19030 vs. ExPASy TrEMBL
Match: A0A6J1DUI2 (uncharacterized protein LOC111024147 OS=Momordica charantia OX=3673 GN=LOC111024147 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 66/181 (36.46%), Postives = 83/181 (45.86%), Query Frame = 0


Query: 2   RLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIEDDLLSE---ELQIEELLNQLT 61
           RLGEFETV LTKEC  ILT K+ QKM D GSFTI VSI    + +   +L     L  LT
Sbjct: 144 RLGEFETVCLTKECRTILTSKIPQKMKDSGSFTIPVSIGGHKIGQALCDLGASINLVPLT 203

Query: 62  -----------------EELCIV----FEAEDN-------------------EAKLSQ-- 121
                            EE+ I+    F A+ N                   EA L +  
Sbjct: 204 VYQKLGMGAVKPMTVTHEEVPIILGRPFLAKGNALVDVHKGVVTMRNKNLELEAMLQKAE 263

Query: 122 -------SVESRVQPEGILERAFESLELEDSDQEPLKPSVEKAHKLELKTLPIHLKRIFF 131
                  S++   +      R  E L+LE+ +Q+ LKPSVE+  KLELK LP HLK  + 
Sbjct: 264 DFYYEVFSIDGGKEITNSWSRTHEDLKLEEVNQKQLKPSVEEPPKLELKALPQHLKYAYL 323

[Close]

BLAST of Moc04g19030 vs. ExPASy TrEMBL
Match: A0A5B6UKZ2 (Integrase, catalytic core OS=Gossypium australe OX=47621 GN=EPI10_013334 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 2   RLGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSIEDDLLSEELQIEELLNQLTEEL 61
           RLGEFE+ ALT+ C+ +L  KL  K+ DLGSFTIL S      +EE  +   +    E  
Sbjct: 112 RLGEFESTALTEGCTVMLMNKLPPKLKDLGSFTILFSNHYVDENEEFHVIGFIEIAVEVE 171

Query: 62  CIVFEAED-----------NEAKLSQSVESRVQPEGILER---AFESLELEDSDQEPLKP 121
              F  ++           NEA +++ +   ++ + + +R   +F+ L+L     +P +P
Sbjct: 172 FAKFYHKNSDNDDTDPFKLNEANMTKELGEFMETKRLEDRLGNSFKYLDLSTRSFKPPRP 231

Query: 122 SVEKAHKLELKTLPIHLKRIFFG 131
           S+E+   LELK+LP HLK  + G
Sbjct: 232 SIEEPPTLELKSLPFHLKYAYLG 254

[Close]

BLAST of Moc04g19030 vs. ExPASy TrEMBL
Match: A0A6J1DUI3 (uncharacterized protein LOC111023221 OS=Momordica charantia OX=3673 GN=LOC111023221 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 3  LGEFETVALTKECSAILTGKLAQKMGDLGSFTILVSI 40
          LGEF+TVALTKECSAILT KL QKMGD GSFTI VSI
Sbjct: 18 LGEFKTVALTKECSAILTEKLPQKMGDPGSFTIPVSI 54

The following BLAST results are available for this feature:

BLAST of Moc04g19030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147186.1	2.2e-13	50.53	uncharacterized protein LOC111016198 [Momordica charantia]	[more]
XP_022152112.1	1.9e-09	40.98	uncharacterized protein LOC111019902 [Momordica charantia]	[more]
XP_022157452.1	3.6e-08	36.46	uncharacterized protein LOC111024147 [Momordica charantia]	[more]
KAA3458760.1	4.0e-07	33.57	Integrase, catalytic core [Gossypium australe]	[more]
XP_012453456.1	1.5e-06	31.22	PREDICTED: uncharacterized protein LOC105775492 [Gossypium raimondii]	[more]

BLAST of Moc04g19030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g19030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1L0	1.0e-13	50.53	uncharacterized protein LOC111016198 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DFB0	9.2e-10	40.98	uncharacterized protein LOC111019902 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DUI2	1.7e-08	36.46	uncharacterized protein LOC111024147 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5B6UKZ2	1.9e-07	33.57	Integrase, catalytic core OS=Gossypium australe OX=47621 GN=EPI10_013334 PE=4 SV...	[more]
A0A6J1DUI3	2.8e-06	86.49	uncharacterized protein LOC111023221 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Moc04g19030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g19030.1	Moc04g19030.1	mRNA