Moc04g19000 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g19000
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Locationchr4: 13901892 .. 13902364 (-)
RNA-Seq ExpressionMoc04g19000
SyntenyMoc04g19000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCAACTTCTAGCCTATCTTGAAATTCTGGCTCATCGGTCTTGGTACTTTGATAGCGATTCTAGGAACCATGTGACCTCTAATCTTGGCCAACTATCCATCTTAGGTATGTACTATGGTTCTCAACATATTATGGTTGAAGATGGGAACAAGTTACCAATTTCTCATATTGGTATCACTTCTCTTAAATCTCCATATGGTTCACTAATTCTCAATAATGGGTTTCTTGTTCCTCGTATGAAAAGGAACCTTTTTAGCATATCCAAATTAACAAAGGATAATTTAGTGATTATTGAATAATATGACATGTTTTGTTTTGTTAAGGAAAAGAAGCCCAAGGGAGTGGTTACAAGGAATGCTTGAAAATGGTCTCTGCAAAGTTTAGACTCATTTTGGACACCTCACCATGCAAGCTGGATGTCAAGAAGCAAATAAGCATCCCCATTTGTTTTAAGGACAACACCTCATGA

mRNA sequence

ATGCAGCAACTTCTAGCCTATCTTGAAATTCTGGCTCATCGGTCTTGGTACTTTGATAGCGATTCTAGGAACCATGTGACCTCTAATCTTGGCCAACTATCCATCTTAGGTATGTACTATGGTTCTCAACATATTATGGTTGAAGATGGGAACAAGTTACCAATTTCTCATATTGGTATCACTTCTCTTAAATCTCCATATGGTTCACTAATTCTCAATAATGGGTTTCTTGTTCCTCGAAAAGAAGCCCAAGGGAGTGGTTACAAGGAATGCTTGAAAATGGTCTCTGCAAAGTTTAGACTCATTTTGGACACCTCACCATGCAAGCTGGATGTCAAGAAGCAAATAAGCATCCCCATTTGTTTTAAGGACAACACCTCATGA

Coding sequence (CDS)

ATGCAGCAACTTCTAGCCTATCTTGAAATTCTGGCTCATCGGTCTTGGTACTTTGATAGCGATTCTAGGAACCATGTGACCTCTAATCTTGGCCAACTATCCATCTTAGGTATGTACTATGGTTCTCAACATATTATGGTTGAAGATGGGAACAAGTTACCAATTTCTCATATTGGTATCACTTCTCTTAAATCTCCATATGGTTCACTAATTCTCAATAATGGGTTTCTTGTTCCTCGAAAAGAAGCCCAAGGGAGTGGTTACAAGGAATGCTTGAAAATGGTCTCTGCAAAGTTTAGACTCATTTTGGACACCTCACCATGCAAGCTGGATGTCAAGAAGCAAATAAGCATCCCCATTTGTTTTAAGGACAACACCTCATGA

Protein sequence

MQQLLAYLEILAHRSWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSPYGSLILNNGFLVPRKEAQGSGYKECLKMVSAKFRLILDTSPCKLDVKKQISIPICFKDNTS
Homology
[Close]
BLAST of Moc04g19000 vs. NCBI nr
Match: GAU49939.1 (hypothetical protein TSUD_290960 [Trifolium subterraneum])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 15  SWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSP-YGSLILN 74
           SW FDS + +H+T++L  LSI   Y G+ H+ V +GN LPI+H+G TS+K+P   SL L+
Sbjct: 303 SWLFDSGASHHITNDLQNLSIKEEYTGNDHLQVANGNSLPITHVGSTSIKTPTSSSLHLS 362

Query: 75  NGFLVP 80
           N   VP
Sbjct: 363 NVLFVP 368

[Close]
BLAST of Moc04g19000 vs. NCBI nr
Match: XP_011010893.1 (PREDICTED: uncharacterized protein LOC105115645 [Populus euphratica])

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-07
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 8   LEILAHRSWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSPY 67
           ++ L +  W+ DS + +H+T+N   L  L +Y+G++ +MV +G  LPISHIG  S  +PY
Sbjct: 109 IQELQNPEWFPDSGATSHMTNNPANLDDLAIYFGNERVMVGNGQSLPISHIGFVSTVAPY 168

Query: 68  GSLILNNGFLVP 80
            S+ L N  +VP
Sbjct: 169 SSIPLFNVLVVP 180

[Close]
BLAST of Moc04g19000 vs. NCBI nr
Match: XP_010246304.1 (PREDICTED: homeobox protein 3-like [Nelumbo nucifera])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0 

Query: 15  SWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSPYGSLILNN 74
           +WY D  + NH+TS+LG LS+   Y+G+ HI V  G  L ISHIG + L +  GS+ILNN
Sbjct: 178 NWYPDLGATNHMTSDLGNLSLHDEYHGTYHITVRHGTGLDISHIGSSVLNTNSGSIILNN 237

Query: 75  GFLVP 80
              VP
Sbjct: 238 ILRVP 242

[Close]
BLAST of Moc04g19000 vs. NCBI nr
Match: PNX95113.1 (copia-type polyprotein [Trifolium pratense])

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 15  SWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSPYGSLILNN 74
           SW FDS + +H+T++L  LSI   Y+G+ ++ V +GN LPISH+G TS+ +    L L+N
Sbjct: 300 SWLFDSGASHHITNDLHNLSIKDEYHGTDNLQVANGNSLPISHVGSTSISTSSSPLHLSN 359

Query: 75  GFLVP 80
              VP
Sbjct: 360 VLFVP 364

[Close]
BLAST of Moc04g19000 vs. NCBI nr
Match: OIT30912.1 (hypothetical protein A4A49_12719 [Nicotiana attenuata])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-07
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 2   QQLLAYLEILAHRSWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGIT 61
           Q  LA    +   +WYFDS + +HVTS++  LS+   Y G+  + V +G KLPISHIG +
Sbjct: 206 QAHLASPSTIVDPAWYFDSGATHHVTSDMANLSLQADYTGNDGLAVGNGMKLPISHIGSS 265

Query: 62  SLKSPYGSLILNNGFLVPR 81
            L +P   + LNN   VP+
Sbjct: 266 ILSTPTRPIYLNNILHVPQ 284

[Close]
BLAST of Moc04g19000 vs. ExPASy TrEMBL
Match: A0A2Z6PRM0 (CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_290960 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.9e-08
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 15  SWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSP-YGSLILN 74
           SW FDS + +H+T++L  LSI   Y G+ H+ V +GN LPI+H+G TS+K+P   SL L+
Sbjct: 303 SWLFDSGASHHITNDLQNLSIKEEYTGNDHLQVANGNSLPITHVGSTSIKTPTSSSLHLS 362

Query: 75  NGFLVP 80
           N   VP
Sbjct: 363 NVLFVP 368

[Close]
BLAST of Moc04g19000 vs. ExPASy TrEMBL
Match: A0A2K3MWC6 (Copia-type polyprotein OS=Trifolium pratense OX=57577 GN=L195_g018296 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 15  SWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSPYGSLILNN 74
           SW FDS + +H+T++L  LSI   Y+G+ ++ V +GN LPISH+G TS+ +    L L+N
Sbjct: 300 SWLFDSGASHHITNDLHNLSIKDEYHGTDNLQVANGNSLPISHVGSTSISTSSSPLHLSN 359

Query: 75  GFLVP 80
              VP
Sbjct: 360 VLFVP 364

[Close]
BLAST of Moc04g19000 vs. ExPASy TrEMBL
Match: A0A1U7Z2G7 (homeobox protein 3-like OS=Nelumbo nucifera OX=4432 GN=LOC104589631 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 0 

Query: 15  SWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSPYGSLILNN 74
           +WY D  + NH+TS+LG LS+   Y+G+ HI V  G  L ISHIG + L +  GS+ILNN
Sbjct: 178 NWYPDLGATNHMTSDLGNLSLHDEYHGTYHITVRHGTGLDISHIGSSVLNTNSGSIILNN 237

Query: 75  GFLVP 80
              VP
Sbjct: 238 ILRVP 242

[Close]
BLAST of Moc04g19000 vs. ExPASy TrEMBL
Match: A0A2N9FA52 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11772 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 10  ILAHRS-WYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGITSLKSPYG 69
           +L H S WY D+ + +H+TS  G L     YYG  +++V +G +LPISH+G T L S +G
Sbjct: 298 LLDHDSHWYTDTGATSHMTSTAGNLHSSSPYYGHDYVVVGNGTRLPISHVGNTILSSQHG 357

Query: 70  SLILNNGFLVPR 81
            L L++  +VPR
Sbjct: 358 DLNLHDVLVVPR 369

[Close]
BLAST of Moc04g19000 vs. ExPASy TrEMBL
Match: A0A314KNU6 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_12719 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 0 

Query: 2   QQLLAYLEILAHRSWYFDSDSRNHVTSNLGQLSILGMYYGSQHIMVEDGNKLPISHIGIT 61
           Q  LA    +   +WYFDS + +HVTS++  LS+   Y G+  + V +G KLPISHIG +
Sbjct: 206 QAHLASPSTIVDPAWYFDSGATHHVTSDMANLSLQADYTGNDGLAVGNGMKLPISHIGSS 265

Query: 62  SLKSPYGSLILNNGFLVPR 81
            L +P   + LNN   VP+
Sbjct: 266 ILSTPTRPIYLNNILHVPQ 284

The following BLAST results are available for this feature:
BLAST of Moc04g19000 vs. NCBI nr
Match NameE-valueIdentityDescription
GAU49939.11.0e-0748.48hypothetical protein TSUD_290960 [Trifolium subterraneum][more]
XP_011010893.13.0e-0740.28PREDICTED: uncharacterized protein LOC105115645 [Populus euphratica][more]
XP_010246304.13.9e-0749.23PREDICTED: homeobox protein 3-like [Nelumbo nucifera][more]
PNX95113.13.9e-0744.62copia-type polyprotein [Trifolium pratense][more]
OIT30912.16.6e-0741.77hypothetical protein A4A49_12719 [Nicotiana attenuata][more]
BLAST of Moc04g19000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g19000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2Z6PRM04.9e-0848.48CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_29... [more]
A0A2K3MWC61.9e-0744.62Copia-type polyprotein OS=Trifolium pratense OX=57577 GN=L195_g018296 PE=4 SV=1[more]
A0A1U7Z2G71.9e-0749.23homeobox protein 3-like OS=Nelumbo nucifera OX=4432 GN=LOC104589631 PE=4 SV=1[more]
A0A2N9FA522.4e-0743.06Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic... [more]
A0A314KNU63.2e-0741.77Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_12719 PE=4 SV=1[more]
BLAST of Moc04g19000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g19000.1Moc04g19000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
molecular_function GO:0005488 binding