Moc04g11050 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g11050
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr4: 8277852 .. 8278473 (-)
RNA-Seq ExpressionMoc04g11050
SyntenyMoc04g11050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTCATGAGGGCTCAAGTGGCAGCCCTAACTAAGGCGCTACAAACGGCAGGTGTACTACTCCCCGAGTTCCCTGAGCCTGAGGTTCAACGCGACCTCCGAAGGGGAAAAACGAAGGCTACAGAGGCCGACCAGGAAATATTGAAGGGGCATAACCTGTCAAAGCTAGTCCTGGGAGGAAACGACCTCCCTCGGGAACTGGAGGACATGCGGACCCGCCTTTCCTCGCTGAACGAGCGAGACCTTCGCAACAAGCTGGACTCCCAACGCTCCAAGAGGGACGTCCCTTCAACGAGGTCAGAGTCGGTCAACAACGGGGACCTGCTGCTGCTATTCGAGCAGCTACGGAAAGAGCTAAAAAATGACCTTCAAAAGGTCCGAGGCAAACTTGTCTCGGATGAGACGAGCTCGATGAGCCACCCTTCACTCAAGCTATCTTAATCGCGCCGATCTCATCCAAGGGGAAGCTTCCGAGCTTCACAACTATAACGGATCCGCCGACCCGGTGGACTACTTGGAGACCTACAAGTCATTGATGGATTTCCTCGCCTACCCTAATGCGGTGAAGTGCAGGGCGTTCTCCGTGACTCTACAGGGGTCCGCGAGGAAATGGTACTGA

mRNA sequence

ATGGACGTCATGAGGGCTCAAGTGGCAGCCCTAACTAAGGCGCTACAAACGGCAGGTGTACTACTCCCCGAGTTCCCTGAGCCTGAGGTTCAACGCGACCTCCGAAGGGGAAAAACGAAGGCTACAGAGGCCGACCAGGAAATATTGAAGGGGCATAACCTGTCAAAGCTAGTCCTGGGAGGAAACGACCTCCCTCGGGAACTGGAGGACATGCGGACCCGCCTTTCCTCGCTGAACGAGCGAGACCTTCGCAACAAGCTGGACTCCCAACGCTCCAAGAGGGACGTCCCTTCAACGAGCTATCTTAATCGCGCCGATCTCATCCAAGGGGAAGCTTCCGAGCTTCACAACTATAACGGATCCGCCGACCCGGTGGACTACTTGGAGACCTACAAGTCATTGATGGATTTCCTCGCCTACCCTAATGCGGTGAAGTGCAGGGCGTTCTCCGTGACTCTACAGGGGTCCGCGAGGAAATGGTACTGA

Coding sequence (CDS)

ATGGACGTCATGAGGGCTCAAGTGGCAGCCCTAACTAAGGCGCTACAAACGGCAGGTGTACTACTCCCCGAGTTCCCTGAGCCTGAGGTTCAACGCGACCTCCGAAGGGGAAAAACGAAGGCTACAGAGGCCGACCAGGAAATATTGAAGGGGCATAACCTGTCAAAGCTAGTCCTGGGAGGAAACGACCTCCCTCGGGAACTGGAGGACATGCGGACCCGCCTTTCCTCGCTGAACGAGCGAGACCTTCGCAACAAGCTGGACTCCCAACGCTCCAAGAGGGACGTCCCTTCAACGAGCTATCTTAATCGCGCCGATCTCATCCAAGGGGAAGCTTCCGAGCTTCACAACTATAACGGATCCGCCGACCCGGTGGACTACTTGGAGACCTACAAGTCATTGATGGATTTCCTCGCCTACCCTAATGCGGTGAAGTGCAGGGCGTTCTCCGTGACTCTACAGGGGTCCGCGAGGAAATGGTACTGA

Protein sequence

MDVMRAQVAALTKALQTAGVLLPEFPEPEVQRDLRRGKTKATEADQEILKGHNLSKLVLGGNDLPRELEDMRTRLSSLNERDLRNKLDSQRSKRDVPSTSYLNRADLIQGEASELHNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY
Homology
BLAST of Moc04g11050 vs. NCBI nr
Match: XP_022149836.1 (uncharacterized protein LOC111018172 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-08
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 116 HNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
           + Y+G+ DPVD++ETY+ +MDF AY +A+KCRA S+TLQG ARKW+
Sbjct: 121 NKYDGTKDPVDHVETYEFIMDFHAYSDAMKCRALSITLQGPARKWF 166

BLAST of Moc04g11050 vs. NCBI nr
Match: GFS41820.1 (hypothetical protein Acr_00g0076520 [Actinidia rufa])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-07
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 0

Query: 1   MDVMRAQVAALTKALQTAGVLLPEFPEPEVQRDLRRGKT-------KATEADQEILKG-- 60
           M +M  +   L + L  A   LP  P P+++R     ++       K+++      +G  
Sbjct: 77  MRIMNEKNGRLIQLLTAANPPLPAVPVPDIKRSRHSNRSEDRSQNIKSSKTPARARRGRS 136

Query: 61  -HNLSKLVLGGNDLPRELEDMRTRLSSLNER-DLRNKLDSQRSKRDVPSTSYLNRADLIQ 120
            H    +        +++ D+  RL ++N R +    +D+   + + P T  + RA +  
Sbjct: 137 PHRGDHIEARNKSTSQKIRDLDARLDAINTRTNASVTVDTLIRQTEPPFTQTVLRARISS 196

Query: 121 --GEASELHNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
                ++L  Y G  DP+D+L++YKSLM      N V C+AFS TL+G AR W+
Sbjct: 197 KFKLPAQLGVYEGKTDPMDHLDSYKSLMSLQGCSNEVMCKAFSATLKGPARSWF 250

BLAST of Moc04g11050 vs. NCBI nr
Match: GFS31826.1 (hypothetical protein Acr_00g0019390 [Actinidia rufa])

HSP 1 Score: 65.1 bits (157), Expect = 6.4e-07
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 85  NKLDSQRSKRDVPSTSYLNRADL-IQGEASELHNYNGSADPVDYLETYKSLMDFLAYPNA 144
           N ++   ++ D P T  + R  L ++ +   L  ++G+ DP+D+LETYK+LMD  A P+ 
Sbjct: 207 NSVEELINRTDTPFTPAVMRVSLPLKFKMPTLEPFDGTKDPLDHLETYKALMDLQAVPDE 266

Query: 145 VKCRAFSVTLQGSARKWY 162
           + CRAF  TL+GS R W+
Sbjct: 267 IMCRAFPTTLKGSTRIWF 284

BLAST of Moc04g11050 vs. NCBI nr
Match: XP_030923433.1 (uncharacterized protein LOC115950367 [Quercus lobata])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 69  EDMRTRLSSLNERDLRNKLDSQRSKRDVPSTSYLNRADLIQG-EASELHNYNGSADPVDY 128
           E M   +++L  R + N LD   ++ + P T+ +N   L Q     ++ +YNG  DP+D+
Sbjct: 23  EQMEVMMNALKGR-VSNDLDDLVNRTNSPLTTSVNSFPLPQKFRMPQIESYNGVKDPLDH 82

Query: 129 LETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
           L+T+K+LM F   P+ + CRAF  TL+G AR W+
Sbjct: 83  LKTFKTLMHFQGVPDKIMCRAFLTTLKGLARVWF 115

BLAST of Moc04g11050 vs. NCBI nr
Match: XP_022137317.1 (uncharacterized protein LOC111008813 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 111 EASELHNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
           +A  +  Y+GS DP DY+E ++SLMDF A  +A+KCRAF + L GSAR WY
Sbjct: 71  KAPTVKPYDGSKDPKDYVEVFESLMDFQAASDAIKCRAFRIALTGSARLWY 121

BLAST of Moc04g11050 vs. ExPASy TrEMBL
Match: A0A6J1D9M1 (uncharacterized protein LOC111018172 OS=Momordica charantia OX=3673 GN=LOC111018172 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 116 HNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
           + Y+G+ DPVD++ETY+ +MDF AY +A+KCRA S+TLQG ARKW+
Sbjct: 121 NKYDGTKDPVDHVETYEFIMDFHAYSDAMKCRALSITLQGPARKWF 166

BLAST of Moc04g11050 vs. ExPASy TrEMBL
Match: A0A7J0DBQ5 (Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0019390 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-07
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0

Query: 85  NKLDSQRSKRDVPSTSYLNRADL-IQGEASELHNYNGSADPVDYLETYKSLMDFLAYPNA 144
           N ++   ++ D P T  + R  L ++ +   L  ++G+ DP+D+LETYK+LMD  A P+ 
Sbjct: 207 NSVEELINRTDTPFTPAVMRVSLPLKFKMPTLEPFDGTKDPLDHLETYKALMDLQAVPDE 266

Query: 145 VKCRAFSVTLQGSARKWY 162
           + CRAF  TL+GS R W+
Sbjct: 267 IMCRAFPTTLKGSTRIWF 284

BLAST of Moc04g11050 vs. ExPASy TrEMBL
Match: A0A7J0DUB5 (Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0076520 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-07
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 0

Query: 1   MDVMRAQVAALTKALQTAGVLLPEFPEPEVQRDLRRGKT-------KATEADQEILKG-- 60
           M +M  +   L + L  A   LP  P P+++R     ++       K+++      +G  
Sbjct: 77  MRIMNEKNGRLIQLLTAANPPLPAVPVPDIKRSRHSNRSEDRSQNIKSSKTPARARRGRS 136

Query: 61  -HNLSKLVLGGNDLPRELEDMRTRLSSLNER-DLRNKLDSQRSKRDVPSTSYLNRADLIQ 120
            H    +        +++ D+  RL ++N R +    +D+   + + P T  + RA +  
Sbjct: 137 PHRGDHIEARNKSTSQKIRDLDARLDAINTRTNASVTVDTLIRQTEPPFTQTVLRARISS 196

Query: 121 --GEASELHNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
                ++L  Y G  DP+D+L++YKSLM      N V C+AFS TL+G AR W+
Sbjct: 197 KFKLPAQLGVYEGKTDPMDHLDSYKSLMSLQGCSNEVMCKAFSATLKGPARSWF 250

BLAST of Moc04g11050 vs. ExPASy TrEMBL
Match: A0A6J1D9E1 (uncharacterized protein LOC111018823 OS=Momordica charantia OX=3673 GN=LOC111018823 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.3e-07
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 111 EASELHNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
           EA  + +Y+GS DP DY+E ++ LMDF A  +A+KCRAF + L GSAR W+
Sbjct: 66  EAPTVKSYDGSKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWF 116

BLAST of Moc04g11050 vs. ExPASy TrEMBL
Match: A0A6J1C7X5 (uncharacterized protein LOC111008813 OS=Momordica charantia OX=3673 GN=LOC111008813 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.3e-07
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 111 EASELHNYNGSADPVDYLETYKSLMDFLAYPNAVKCRAFSVTLQGSARKWY 162
           +A  +  Y+GS DP DY+E ++SLMDF A  +A+KCRAF + L GSAR WY
Sbjct: 71  KAPTVKPYDGSKDPKDYVEVFESLMDFQAASDAIKCRAFRIALTGSARLWY 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149836.13.4e-0860.87uncharacterized protein LOC111018172 [Momordica charantia][more]
GFS41820.16.4e-0727.01hypothetical protein Acr_00g0076520 [Actinidia rufa][more]
GFS31826.16.4e-0739.74hypothetical protein Acr_00g0019390 [Actinidia rufa][more]
XP_030923433.11.1e-0637.23uncharacterized protein LOC115950367 [Quercus lobata][more]
XP_022137317.11.1e-0654.90uncharacterized protein LOC111008813 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D9M11.6e-0860.87uncharacterized protein LOC111018172 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A7J0DBQ53.1e-0739.74Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0... [more]
A0A7J0DUB53.1e-0727.01Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0... [more]
A0A6J1D9E15.3e-0752.94uncharacterized protein LOC111018823 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1C7X55.3e-0754.90uncharacterized protein LOC111008813 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g11050.1Moc04g11050.1mRNA