Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCAACTATTTCAAATTCTTGTGGTAAAGAGAAATTGAAATTCGCAGATGTCAGAGATGTAGCTCTTGGAGAGGAGATTCGCATAAAGAATTCTGGTATTGCGTCTACTTCTGGTATAGATTTGAATGTAGATAGAGAAACAAATAATAACAGAGACCACAGAAAATATGGAAAGTTAAGAAATAACAGAAGTAAGTCTAAAAACATCAGACTAAAATGTTAGAATTATAGTAAGACAGGACATCTGAGGAGGAACTACAAAGCCCTAAATAAAGCTGAAGGGAAAGAAGTTGGTGCAAATTTTGTTGCTCAATAAATACATGATGCTCTAGTTCTTGCAGTTGAAGGCGCTCATAACACATGGGTGGTGGATTCAGGTGCGTCTTTTCACACTACAGGACAACGTGATATTCTTGAAAATTATGTTGCAGGAAATCATGGAAAGATGTATCTTGCTGATGGAAAGCCTTTAGACATCATTGGGATTTGTGACGTTAATTTAAAAATGGCGAACAGTTCAGTCTAG
mRNA sequence
ATGAAGGCAACTATTTCAAATTCTTGTGGTAAAGAGAAATTGAAATTCGCAGATGTCAGAGATGTAGCTCTTGGAGAGGAGATTCGCATAAAGAATTCTGGTATTGCGTCTACTTCTGGTATAGATTTGAATGTAGATAGAGAAACAAATAATAACAGAGACCACAGAAAATATGGAAAGTTAAGAAATAACAGAATTGAAGGCGCTCATAACACATGGGTGGTGGATTCAGGTGCGTCTTTTCACACTACAGGACAACGTGATATTCTTGAAAATTATGTTGCAGGAAATCATGGAAAGATGTATCTTGCTGATGGAAAGCCTTTAGACATCATTGGGATTTGTGACGTTAATTTAAAAATGGCGAACAGTTCAGTCTAG
Coding sequence (CDS)
ATGAAGGCAACTATTTCAAATTCTTGTGGTAAAGAGAAATTGAAATTCGCAGATGTCAGAGATGTAGCTCTTGGAGAGGAGATTCGCATAAAGAATTCTGGTATTGCGTCTACTTCTGGTATAGATTTGAATGTAGATAGAGAAACAAATAATAACAGAGACCACAGAAAATATGGAAAGTTAAGAAATAACAGAATTGAAGGCGCTCATAACACATGGGTGGTGGATTCAGGTGCGTCTTTTCACACTACAGGACAACGTGATATTCTTGAAAATTATGTTGCAGGAAATCATGGAAAGATGTATCTTGCTGATGGAAAGCCTTTAGACATCATTGGGATTTGTGACGTTAATTTAAAAATGGCGAACAGTTCAGTCTAG
Protein sequence
MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV
Homology
BLAST of Moc04g10630 vs. NCBI nr
Match:
XP_022152845.1 (uncharacterized protein LOC111020469 [Momordica charantia])
HSP 1 Score: 122.1 bits (305), Expect = 3.5e-24
Identity = 79/175 (45.14%), Postives = 89/175 (50.86%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGK 60
M+A ISNSC KEKLKF DVRD AL EEIR K+SGIA TSG LNVDR NNNR + GK
Sbjct: 708 MRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIAPTSGSVLNVDRGRNNNRGYGNRGK 767
Query: 61 LRNNR-------------------------------------------------IEGAHN 120
+NNR +E AH+
Sbjct: 768 SKNNRSRSRNSRFECWNCGKIGHLKSNCKAPKKNEGNEADANVAEQIHDALVIAVESAHD 827
Query: 121 TWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV 127
TWV+DS GNHGK+YLADG+PLDIIGI +VNLKMAN SV
Sbjct: 828 TWVMDS------------------GNHGKVYLADGEPLDIIGIGEVNLKMANGSV 864
BLAST of Moc04g10630 vs. NCBI nr
Match:
KAG6525408.1 (hypothetical protein ZIOFF_015364 [Zingiber officinale])
HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 65/128 (50.78%), Postives = 81/128 (63.28%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSG--IASTSGIDLNVDRETNNNRDHRKY 60
M+A +SNS G KL F DVRD L EE+RI +SG +AS S +++ VD
Sbjct: 48 MQAVVSNSVGNTKLNFNDVRDRILAEEVRIIDSGEMLASNSALNIEVDSPI--------- 107
Query: 61 GKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVN 120
+ WV+DSGASFHTT QR+ILENYVAGNHGK+YLADG+PLDI+G +
Sbjct: 108 ------------DPWVLDSGASFHTTAQREILENYVAGNHGKVYLADGEPLDIVGTGSIR 154
Query: 121 LKMANSSV 127
LKM+N V
Sbjct: 168 LKMSNGVV 154
BLAST of Moc04g10630 vs. NCBI nr
Match:
RVX07359.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 117.5 bits (293), Expect = 8.5e-23
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVD---RETNNNRDHRK 60
MK +SNS GKEKLK+ D+R + L EEIR++++ S SG LN++ R+ N +
Sbjct: 113 MKMAVSNSTGKEKLKYNDIRYLILAEEIRLRDASETSGSGSALNLETRSRDQANKYNAGT 172
Query: 61 YGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDV 120
GK +++ + W++DSGASFHTT R+I++NYVAG+ GK+YLADG LD++G+ DV
Sbjct: 173 VGKQVTLKVDSPLDDWILDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDV 232
Query: 121 NLKMANSSV 127
+ + N SV
Sbjct: 233 RISLPNGSV 241
BLAST of Moc04g10630 vs. NCBI nr
Match:
KAB5561215.1 (hypothetical protein DKX38_006172 [Salix brachista])
HSP 1 Score: 117.5 bits (293), Expect = 8.5e-23
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKY-- 60
M+ TISNS GK KL + D+RD+ LGEE+R +++G +STSG LNV+ + + K
Sbjct: 95 MRTTISNSAGKSKLNYDDIRDLILGEEVRRRDAGESSTSGSTLNVETRGHIQANCYKMKK 154
Query: 61 ---GKLRNNRIEGAH-----------NTWVVDSGASFHTTGQRDILENYVAGNHGKMYLA 120
K N E H ++WV+DSGASFHTT ++IL+NYVAG++G +YLA
Sbjct: 155 EDDDKSANTVAEEGHEALLLSVSSPLDSWVLDSGASFHTTPHQNILQNYVAGDYGVVYLA 214
Query: 121 DGKPLDIIGICDVNLKMANSS 126
DG+PL IIGI DV +K+ N+S
Sbjct: 215 DGEPLRIIGIGDVEIKLPNNS 235
BLAST of Moc04g10630 vs. NCBI nr
Match:
PON60333.1 (Zinc finger, CCHC-type [Parasponia andersonii])
HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 74/181 (40.88%), Postives = 97/181 (53.59%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNV---DR--ETNNNRDH 60
M+A +SNS GKEKL+F DVRD L EE+R +SG ++S LN+ DR E N+NR
Sbjct: 159 MRAAVSNSVGKEKLQFNDVRDRILAEEVRRIDSGEGASSSSALNLKNRDRSSEKNSNRGR 218
Query: 61 RKYGKLRNNR-------------------------------------------------- 120
K K RN R
Sbjct: 219 DK-SKSRNGRNKSRSKRRMECWNCGKTGHIKKNCRAPRKDDSRNDANAITDEVQDALLLS 278
Query: 121 IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSS 127
++ ++WV+DSGASFHTT RD+LENY+AGN+GK+YLADG+PLDI+G+ D+ LKM+N S
Sbjct: 279 VDNPIDSWVLDSGASFHTTAHRDVLENYIAGNYGKVYLADGEPLDIVGMGDIRLKMSNGS 338
BLAST of Moc04g10630 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 45.1 bits (105), Expect = 7.0e-04
Identity = 21/55 (38.18%), Postives = 31/55 (56.36%), Query Frame = 0
Query: 66 IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLK 121
+ G + WVVD+ AS H T RD+ YVAG+ G + + + I GI D+ +K
Sbjct: 287 LSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIK 341
BLAST of Moc04g10630 vs. ExPASy TrEMBL
Match:
A0A6J1DF43 (uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020469 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 79/175 (45.14%), Postives = 89/175 (50.86%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGK 60
M+A ISNSC KEKLKF DVRD AL EEIR K+SGIA TSG LNVDR NNNR + GK
Sbjct: 708 MRAAISNSCEKEKLKFEDVRDAALAEEIRRKDSGIAPTSGSVLNVDRGRNNNRGYGNRGK 767
Query: 61 LRNNR-------------------------------------------------IEGAHN 120
+NNR +E AH+
Sbjct: 768 SKNNRSRSRNSRFECWNCGKIGHLKSNCKAPKKNEGNEADANVAEQIHDALVIAVESAHD 827
Query: 121 TWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSSV 127
TWV+DS GNHGK+YLADG+PLDIIGI +VNLKMAN SV
Sbjct: 828 TWVMDS------------------GNHGKVYLADGEPLDIIGIGEVNLKMANGSV 864
BLAST of Moc04g10630 vs. ExPASy TrEMBL
Match:
A0A438JEH9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1544 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 4.1e-23
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVD---RETNNNRDHRK 60
MK +SNS GKEKLK+ D+R + L EEIR++++ S SG LN++ R+ N +
Sbjct: 113 MKMAVSNSTGKEKLKYNDIRYLILAEEIRLRDASETSGSGSALNLETRSRDQANKYNAGT 172
Query: 61 YGKLRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDV 120
GK +++ + W++DSGASFHTT R+I++NYVAG+ GK+YLADG LD++G+ DV
Sbjct: 173 VGKQVTLKVDSPLDDWILDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDV 232
Query: 121 NLKMANSSV 127
+ + N SV
Sbjct: 233 RISLPNGSV 241
BLAST of Moc04g10630 vs. ExPASy TrEMBL
Match:
A0A5N5N166 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_006172 PE=4 SV=1)
HSP 1 Score: 117.5 bits (293), Expect = 4.1e-23
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKY-- 60
M+ TISNS GK KL + D+RD+ LGEE+R +++G +STSG LNV+ + + K
Sbjct: 95 MRTTISNSAGKSKLNYDDIRDLILGEEVRRRDAGESSTSGSTLNVETRGHIQANCYKMKK 154
Query: 61 ---GKLRNNRIEGAH-----------NTWVVDSGASFHTTGQRDILENYVAGNHGKMYLA 120
K N E H ++WV+DSGASFHTT ++IL+NYVAG++G +YLA
Sbjct: 155 EDDDKSANTVAEEGHEALLLSVSSPLDSWVLDSGASFHTTPHQNILQNYVAGDYGVVYLA 214
Query: 121 DGKPLDIIGICDVNLKMANSS 126
DG+PL IIGI DV +K+ N+S
Sbjct: 215 DGEPLRIIGIGDVEIKLPNNS 235
BLAST of Moc04g10630 vs. ExPASy TrEMBL
Match:
A0A2P5CH01 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 9.2e-23
Identity = 74/181 (40.88%), Postives = 97/181 (53.59%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNV---DR--ETNNNRDH 60
M+A +SNS GKEKL+F DVRD L EE+R +SG ++S LN+ DR E N+NR
Sbjct: 159 MRAAVSNSVGKEKLQFNDVRDRILAEEVRRIDSGEGASSSSALNLKNRDRSSEKNSNRGR 218
Query: 61 RKYGKLRNNR-------------------------------------------------- 120
K K RN R
Sbjct: 219 DK-SKSRNGRNKSRSKRRMECWNCGKTGHIKKNCRAPRKDDSRNDANAITDEVQDALLLS 278
Query: 121 IEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLKMANSS 127
++ ++WV+DSGASFHTT RD+LENY+AGN+GK+YLADG+PLDI+G+ D+ LKM+N S
Sbjct: 279 VDNPIDSWVLDSGASFHTTAHRDVLENYIAGNYGKVYLADGEPLDIVGMGDIRLKMSNGS 338
BLAST of Moc04g10630 vs. ExPASy TrEMBL
Match:
A5ASH8 (gag_pre-integrs domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_040580 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 0
Query: 1 MKATISNSCGKEKLKFADVRDVALGEEIRIKNSGIASTSGIDLNVDRETNNNRDHRKYGK 60
M+ +SNS GKEKLK+ D+RD+ L EEIR ++ G S SG DLN++
Sbjct: 159 MRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDVGETSGSGSDLNLE-------------- 218
Query: 61 LRNNRIEGAHNTWVVDSGASFHTTGQRDILENYVAGNHGKMYLADGKPLDIIGICDVNLK 120
R++ + WV+DSGASFHTT R+I++NYVA + GK+YLADG LD++G+ DV +
Sbjct: 219 -TRGRVDSPLDDWVLDSGASFHTTPHREIIQNYVADDFGKVYLADGSALDVVGLGDVRIS 269
Query: 121 MANSSV 127
+ N S+
Sbjct: 279 LPNGSI 269
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022152845.1 | 3.5e-24 | 45.14 | uncharacterized protein LOC111020469 [Momordica charantia] | [more] |
| KAG6525408.1 | 1.3e-23 | 50.78 | hypothetical protein ZIOFF_015364 [Zingiber officinale] | [more] |
| RVX07359.1 | 8.5e-23 | 45.74 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
| KAB5561215.1 | 8.5e-23 | 46.81 | hypothetical protein DKX38_006172 [Salix brachista] | [more] |
| PON60333.1 | 1.9e-22 | 40.88 | Zinc finger, CCHC-type [Parasponia andersonii] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P10978 | 7.0e-04 | 38.18 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DF43 | 1.7e-24 | 45.14 | uncharacterized protein LOC111020469 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
| A0A438JEH9 | 4.1e-23 | 45.74 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
| A0A5N5N166 | 4.1e-23 | 46.81 | Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_006172 PE=4 SV=1 | [more] |
| A0A2P5CH01 | 9.2e-23 | 40.88 | Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=... | [more] |
| A5ASH8 | 2.0e-22 | 45.24 | gag_pre-integrs domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_0... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
