Moc04g09790 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g09790
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptioncinnamoyl-CoA reductase-like SNL6
Locationchr4: 7274249 .. 7274701 (-)
RNA-Seq ExpressionMoc04g09790
SyntenyMoc04g09790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCTACAACAGTGAGTTTGTTGGGGGTTGTTAGAAGCTCAAAAGGGAAATCTAGGATAGTGGCAATAGGCCACAAAAGATCTTATATTTATATGTCAAAGTTTAGGGTTGCCAAGGGTTCACTAAGACAGAGAATGCACAGAGTAACTGCAGATGGTTTAGGGCAAGACCTTAGAAGACTAGAAGCATTGATGGCCAGAAAAGATCAGAAGAATCTGCCATCAGCTCAAGTTGAACAGTTGGGAAGTACAAAAAAAGGAAATGGGAATTTGATAGGCCATCGAGTTCAGACCTCAGCTGTCAGACATTCAAGCGAGCTGGTGAAGTTACATGGGCAAATTAGTGCATTGAAGGGTACGAGCTCTGTTTCTAGTGTGGCGACATGCTTGGGTGGGAGTGTCAAGCCTAATGTAGAGAGTAAATCTTCTTTCAGATGTCAGTGGAATTGA

mRNA sequence

ATGGTGGCTACAACAGTGAGTTTGTTGGGGGTTGTTAGAAGCTCAAAAGGGAAATCTAGGATAGTGGCAATAGGCCACAAAAGATCTTATATTTATATGTCAAAGTTTAGGGTTGCCAAGGGTTCACTAAGACAGAGAATGCACAGAGTAACTGCAGATGGTTTAGGGCAAGACCTTAGAAGACTAGAAGCATTGATGGCCAGAAAAGATCAGAAGAATCTGCCATCAGCTCAAGTTGAACAGTTGGGAAGTACAAAAAAAGGAAATGGGAATTTGATAGGCCATCGAGTTCAGACCTCAGCTGTCAGACATTCAAGCGAGCTGGTGAAGTTACATGGGCAAATTAGTGCATTGAAGGGTACGAGCTCTGTTTCTAGTGTGGCGACATGCTTGGGTGGGAGTGTCAAGCCTAATGTAGAGAGTAAATCTTCTTTCAGATGTCAGTGGAATTGA

Coding sequence (CDS)

ATGGTGGCTACAACAGTGAGTTTGTTGGGGGTTGTTAGAAGCTCAAAAGGGAAATCTAGGATAGTGGCAATAGGCCACAAAAGATCTTATATTTATATGTCAAAGTTTAGGGTTGCCAAGGGTTCACTAAGACAGAGAATGCACAGAGTAACTGCAGATGGTTTAGGGCAAGACCTTAGAAGACTAGAAGCATTGATGGCCAGAAAAGATCAGAAGAATCTGCCATCAGCTCAAGTTGAACAGTTGGGAAGTACAAAAAAAGGAAATGGGAATTTGATAGGCCATCGAGTTCAGACCTCAGCTGTCAGACATTCAAGCGAGCTGGTGAAGTTACATGGGCAAATTAGTGCATTGAAGGGTACGAGCTCTGTTTCTAGTGTGGCGACATGCTTGGGTGGGAGTGTCAAGCCTAATGTAGAGAGTAAATCTTCTTTCAGATGTCAGTGGAATTGA

Protein sequence

MVATTVSLLGVVRSSKGKSRIVAIGHKRSYIYMSKFRVAKGSLRQRMHRVTADGLGQDLRRLEALMARKDQKNLPSAQVEQLGSTKKGNGNLIGHRVQTSAVRHSSELVKLHGQISALKGTSSVSSVATCLGGSVKPNVESKSSFRCQWN
Homology
[Close]
BLAST of Moc04g09790 vs. NCBI nr
Match: XP_022152155.1 (cinnamoyl-CoA reductase-like SNL6 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 7.5e-34
Identity = 88/129 (68.22%), Postives = 99/129 (76.74%), Query Frame = 0 

Query: 21  IVAIGHKRSYIYMSKFRVAKGSLRQRMHRVTADGLGQDLRRLEALMARKDQKNLPSAQVE 80
           +VA GHKRSY+Y+S+F VAKGSLRQ MH+V A G  + LRR  ALMA+ DQKNLPS QV+
Sbjct: 2   VVATGHKRSYVYVSEFEVAKGSLRQTMHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVK 61

Query: 81  QLGSTKKGNGNLIGHRVQTSAVRHSSELVKLHGQISALKGTSSVSSVATCLGGSVKPNVE 140
           QL STKKGN NLIGHRV TSAVR   ELVK H +ISALKGT S+SSVAT L GS K + E
Sbjct: 62  QLRSTKKGNENLIGHRVHTSAVRCLGELVKSHRRISALKGTGSISSVATYLSGSAKSSGE 121

Query: 141 SKSSFRCQW 150
             SSFR  W
Sbjct: 122 --SSFRSHW 128

[Close]
BLAST of Moc04g09790 vs. NCBI nr
Match: XP_022157059.1 (uncharacterized protein LOC111023870 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-24
Identity = 71/109 (65.14%), Postives = 80/109 (73.39%), Query Frame = 0 

Query: 41  GSLRQRMHRVTADGLGQDLRRLEALMARKDQKNLPSAQVEQLGSTKKGNGNLIGHRVQTS 100
           GSLRQ MHRV  D  G+DL+    LMAR DQKNLPSA V+QL ST+KGN NLIGH+V TS
Sbjct: 53  GSLRQTMHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTS 112

Query: 101 AVRHSSELVKLHGQISALKGTSSVSSVATCLGGSVKPNVESKSSFRCQW 150
           AVR S ELVK H +ISA KGT  VSSV T LGGS K + E  SSF+ +W
Sbjct: 113 AVRRSGELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGE--SSFKGRW 159

[Close]
BLAST of Moc04g09790 vs. ExPASy TrEMBL
Match: A0A6J1DD48 (cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.6e-34
Identity = 88/129 (68.22%), Postives = 99/129 (76.74%), Query Frame = 0 

Query: 21  IVAIGHKRSYIYMSKFRVAKGSLRQRMHRVTADGLGQDLRRLEALMARKDQKNLPSAQVE 80
           +VA GHKRSY+Y+S+F VAKGSLRQ MH+V A G  + LRR  ALMA+ DQKNLPS QV+
Sbjct: 2   VVATGHKRSYVYVSEFEVAKGSLRQTMHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVK 61

Query: 81  QLGSTKKGNGNLIGHRVQTSAVRHSSELVKLHGQISALKGTSSVSSVATCLGGSVKPNVE 140
           QL STKKGN NLIGHRV TSAVR   ELVK H +ISALKGT S+SSVAT L GS K + E
Sbjct: 62  QLRSTKKGNENLIGHRVHTSAVRCLGELVKSHRRISALKGTGSISSVATYLSGSAKSSGE 121

Query: 141 SKSSFRCQW 150
             SSFR  W
Sbjct: 122 --SSFRSHW 128

[Close]
BLAST of Moc04g09790 vs. ExPASy TrEMBL
Match: A0A6J1DVE9 (uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023870 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.8e-25
Identity = 71/109 (65.14%), Postives = 80/109 (73.39%), Query Frame = 0 

Query: 41  GSLRQRMHRVTADGLGQDLRRLEALMARKDQKNLPSAQVEQLGSTKKGNGNLIGHRVQTS 100
           GSLRQ MHRV  D  G+DL+    LMAR DQKNLPSA V+QL ST+KGN NLIGH+V TS
Sbjct: 53  GSLRQTMHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTS 112

Query: 101 AVRHSSELVKLHGQISALKGTSSVSSVATCLGGSVKPNVESKSSFRCQW 150
           AVR S ELVK H +ISA KGT  VSSV T LGGS K + E  SSF+ +W
Sbjct: 113 AVRRSGELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGE--SSFKGRW 159

The following BLAST results are available for this feature:
BLAST of Moc04g09790 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152155.17.5e-3468.22cinnamoyl-CoA reductase-like SNL6 [Momordica charantia][more]
XP_022157059.11.4e-2465.14uncharacterized protein LOC111023870 [Momordica charantia][more]
BLAST of Moc04g09790 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g09790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DD483.6e-3468.22cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944... [more]
A0A6J1DVE96.8e-2565.14uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Moc04g09790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g09790.1Moc04g09790.1mRNA