Moc04g09280 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g09280
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionclassical arabinogalactan protein 1-like
Locationchr4: 6855286 .. 6855612 (-)
RNA-Seq ExpressionMoc04g09280
SyntenyMoc04g09280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTCATACTGATAACCTCCGCCGCCGCTCAGTCTCCGAAGAAACATTCGCACGCCGCTTCTCCTTCGCCGGCCGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCTCGCTGGTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCTCCATCTCCTCCCCTCCCGCCGATGCTCCGGCTGCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCGGCTTTCCTCATGTAG

mRNA sequence

ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTCATACTGATAACCTCCGCCGCCGCTCAGTCTCCGAAGAAACATTCGCACGCCGCTTCTCCTTCGCCGGCCGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCTCGCTGGTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCTCCATCTCCTCCCCTCCCGCCGATGCTCCGGCTGCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCGGCTTTCCTCATGTAG

Coding sequence (CDS)

ATGGCTTCCGTACGATTTACAGTCCTTGCCCTAATGGCGCTCATACTGATAACCTCCGCCGCCGCTCAGTCTCCGAAGAAACATTCGCACGCCGCTTCTCCTTCGCCGGCCGCCGATTCGCCTAGGGTTTCGCCGAAATCCGCGCCGTCGCCGGCCACCGGTAAGCATTCTCTCGCTGGTCCGCCTTCGTCTTCTCCGTCACCGGCCCTCCCTCCATCCTCCATCTCCTCCCCTCCCGCCGATGCTCCGGCTGCTGCCGGAAACACTGCTGCTTCCAATTCTTTCGCCGTCGCCGGTTCTCTCTTCGCCGCGGCTTTCCTCATGTAG

Protein sequence

MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAGPPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAFLM
Homology
BLAST of Moc04g09280 vs. NCBI nr
Match: XP_022141985.1 (classical arabinogalactan protein 1-like [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 3.5e-41
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG 60
           MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG
Sbjct: 1   MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG 60

Query: 61  PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAFLM 109
           PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAFLM
Sbjct: 61  PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAFLM 108

BLAST of Moc04g09280 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.8 bits (146), Expect = 8.1e-06
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 0

Query: 3   SVRFTVLALMALILITSAAAQSP---------KKHSHAASPSPAADSPRVSPKSAPSPAT 62
           ++R  V+ +M  +LI SA AQSP         K  S A S SP+ +SP+ SP +AP+PA+
Sbjct: 2   AIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPAS 61

Query: 63  GKHSLAGPPSSSP--SPALPPSSISSPPADAPAAAGNTAASNSFAVAGSL 102
            K S   PP++SP  SP+  PSSISSPPADAPA +GN AAS SF++ GS+
Sbjct: 62  LK-SPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSV 110

BLAST of Moc04g09280 vs. NCBI nr
Match: KAA0061155.1 (classical arabinogalactan protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 0

Query: 3   SVRFTVLALMALILITSAAAQSP-KKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAGP 62
           ++R  V  ++   LI SA AQSP +  S A S SP+  SP+ SP  AP+P++ K   + P
Sbjct: 2   AIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSPP 61

Query: 63  -------PSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAF 107
                  PSSSPSPA  PSSISSPPADAPA +GN AAS +F+V GS   A +
Sbjct: 62  STSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALY 113

BLAST of Moc04g09280 vs. NCBI nr
Match: PQQ16428.1 (classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 56/124 (45.16%), Postives = 69/124 (55.65%), Query Frame = 0

Query: 1   MASVRFTVLALMALILITSAAAQSPKKH---------SHAASPSPAADSPRVSPK--SAP 60
           MA     VL LMA +L+ S  AQSP             HAA+PSP++  P+ SP   S P
Sbjct: 1   MARFSSVVLVLMASLLLASTRAQSPTSSPAKSPALSPKHAAAPSPSSTPPKASPSPLSTP 60

Query: 61  SPATGKHSLAGPPSSSP-SPALPPSSISSPPADAPAAAGNTAASNSFAVAG----SLFAA 109
             A   HS   PPS+SP SPA+PPSS+S PP++APA A N A  N F+ AG      FAA
Sbjct: 61  PSAAPSHSPPSPPSASPESPAIPPSSVSVPPSEAPAPATNGAVLNRFSAAGFVAVGFFAA 120

BLAST of Moc04g09280 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-05
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 0

Query: 3   SVRFTVLALMALILITSAAAQSP---------KKHSHAASPSPAADSPRVSPKSAPSPAT 62
           ++R  V+ +M  +LI SA AQSP         K  S A S SP+ +SP+ SP +AP+PA+
Sbjct: 2   AIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPAS 61

Query: 63  GKHSLAGP---PSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAF 107
            +   + P   PS SPSP+  PSSISSPPADAPA +GN AAS S ++ GS+ A  +
Sbjct: 62  LQSPPSPPAASPSLSPSPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVLY 117

BLAST of Moc04g09280 vs. ExPASy TrEMBL
Match: A0A6J1CJM5 (classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012223 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG 60
           MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG
Sbjct: 1   MASVRFTVLALMALILITSAAAQSPKKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAG 60

Query: 61  PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAFLM 109
           PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAFLM
Sbjct: 61  PPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAFLM 108

BLAST of Moc04g09280 vs. ExPASy TrEMBL
Match: A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.1e-06
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 0

Query: 3   SVRFTVLALMALILITSAAAQSP-KKHSHAASPSPAADSPRVSPKSAPSPATGKHSLAGP 62
           ++R  V  ++   LI SA AQSP +  S A S SP+  SP+ SP  AP+P++ K   + P
Sbjct: 2   AIRSLVAMILVSFLIASAFAQSPTQSPSKAPSVSPSVKSPKSSPALAPTPSSLKSPPSPP 61

Query: 63  -------PSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAAAF 107
                  PSSSPSPA  PSSISSPPADAPA +GN AAS +F+V GS   A +
Sbjct: 62  STSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVALY 113

BLAST of Moc04g09280 vs. ExPASy TrEMBL
Match: A0A314ZGT3 (Classical arabinogalactan protein 1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_11060 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 56/124 (45.16%), Postives = 69/124 (55.65%), Query Frame = 0

Query: 1   MASVRFTVLALMALILITSAAAQSPKKH---------SHAASPSPAADSPRVSPK--SAP 60
           MA     VL LMA +L+ S  AQSP             HAA+PSP++  P+ SP   S P
Sbjct: 1   MARFSSVVLVLMASLLLASTRAQSPTSSPAKSPALSPKHAAAPSPSSTPPKASPSPLSTP 60

Query: 61  SPATGKHSLAGPPSSSP-SPALPPSSISSPPADAPAAAGNTAASNSFAVAG----SLFAA 109
             A   HS   PPS+SP SPA+PPSS+S PP++APA A N A  N F+ AG      FAA
Sbjct: 61  PSAAPSHSPPSPPSASPESPAIPPSSVSVPPSEAPAPATNGAVLNRFSAAGFVAVGFFAA 120

BLAST of Moc04g09280 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 54/110 (49.09%), Postives = 72/110 (65.45%), Query Frame = 0

Query: 3   SVRFTVLALMALILITSAAAQSP---------KKHSHAASPSPAADSPRVSPKSAPSPAT 62
           ++R  V+ +   +LI SA AQSP         K  S A S SP+ +SP+ SP +AP+PA+
Sbjct: 2   AIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPAS 61

Query: 63  GKHSLAGPPSSSP--SPALPPSSISSPPADAPAAAGNTAASNSFAVAGSL 102
            K S   PP++SP  SP+  PSSISSPPADAPA +GN AAS SF++ GS+
Sbjct: 62  LK-SPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSV 110

BLAST of Moc04g09280 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 0

Query: 1   MASVRFTVLALMALILITSAAAQSP---------KKHSHAASPSPAADSPRVSPKSAPSP 60
           MA   F V+ L+AL LI SA AQSP         K  S A S SP+  SP+ SP +AP+P
Sbjct: 1   MAIRSFVVMILVAL-LIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTP 60

Query: 61  ATGKHSLAGPPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSL 102
           A+        PS+SPSPA  PSSISSPPADAPA +G+ AAS SF+V GS+
Sbjct: 61  ASS-------PSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSV 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141985.13.5e-41100.00classical arabinogalactan protein 1-like [Momordica charantia][more]
KAG7030900.18.1e-0650.00hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0061155.11.1e-0549.11classical arabinogalactan protein 1-like [Cucumis melo var. makuwa][more]
PQQ16428.12.4e-0545.16classical arabinogalactan protein 1 [Prunus yedoensis var. nudiflora][more]
XP_023542663.14.0e-0546.55classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CJM51.7e-41100.00classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5A7V5Q95.1e-0649.11Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A314ZGT31.1e-0545.16Classical arabinogalactan protein 1 OS=Prunus yedoensis var. nudiflora OX=209455... [more]
A0A6J1FW491.9e-0549.09classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1E9Q33.3e-0552.73classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..78
NoneNo IPR availablePANTHERPTHR36321:SF2CLASSICAL ARABINOGALACTAN PROTEIN 1coord: 1..106
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g09280.1Moc04g09280.1mRNA