Moc04g07780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g07780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 5657125 .. 5657553 (-)
RNA-Seq Expression	Moc04g07780
Synteny	Moc04g07780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGCATCCCCCGGTCTTCAGCCCGAGCTGTATGAGGCAGAAACTCGTCTCACGTACGGTTCGGAGGCCGAGCCCCACCCTAGCAGTAATGGTGCAGGTAGGTTGTGGGGAGATGGTGGTTTGGTCGGGTGAGAGGGTGTCGGCTAGTTCTAAGCAGCCGCCTGACTGGAGAGGGCGGGAGGTTTGAATGAGTGACTTCCCGTTTTTCAGTCAGTAAAGTAGACTGACAGAAAGAAGAGAGGTTTAAGCACTTTCGATTCGGGGCTCGCCGGCCCATTCATTCTTCAGAGCGGGCCGGCAGGCCGGGCGGACGGGGACTGTCGAAGAAGTGCAAAAGGAACTACCTACCCCCGAAAGGCTTGGAAGCAAGCTACCAGCACCTATCGGCGAGAACGGATCCCGAAACCACCAGCCACCCCGACCTAA

mRNA sequence

ATGCCAGCATCCCCCGGTCTTCAGCCCGAGCTGTATGAGGCAGAAACTCGTCTCACGTACGGTTCGGAGGCCGAGCCCCACCCTAGCAGTAATGGTGCAGGTAGGTTGTGGGGAGATGGTGGTTTGGTCGGAAAGAAGAGAGGTTTAAGCACTTTCGATTCGGGGCTCGCCGGCCCATTCATTCTTCAGAGCGGGCCGGCAGGCCGGGCGGACGGGGACTGTCGAAGAAGTGCAAAAGGAACTACCTACCCCCGAAAGGCTTGGAAGCAAGCTACCAGCACCTATCGGCGAGAACGGATCCCGAAACCACCAGCCACCCCGACCTAA

Coding sequence (CDS)

ATGCCAGCATCCCCCGGTCTTCAGCCCGAGCTGTATGAGGCAGAAACTCGTCTCACGTACGGTTCGGAGGCCGAGCCCCACCCTAGCAGTAATGGTGCAGGTAGGTTGTGGGGAGATGGTGGTTTGGTCGGAAAGAAGAGAGGTTTAAGCACTTTCGATTCGGGGCTCGCCGGCCCATTCATTCTTCAGAGCGGGCCGGCAGGCCGGGCGGACGGGGACTGTCGAAGAAGTGCAAAAGGAACTACCTACCCCCGAAAGGCTTGGAAGCAAGCTACCAGCACCTATCGGCGAGAACGGATCCCGAAACCACCAGCCACCCCGACCTAA

Protein sequence

MPASPGLQPELYEAETRLTYGSEAEPHPSSNGAGRLWGDGGLVGKKRGLSTFDSGLAGPFILQSGPAGRADGDCRRSAKGTTYPRKAWKQATSTYRRERIPKPPATPT

Homology

[Close]

BLAST of Moc04g07780 vs. NCBI nr
Match: KAG2611723.1 (hypothetical protein PVAP13_4KG148115 [Panicum virgatum])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 5   PGLQPELYEAETRLTYGSEAEPHPSSNGA 34
           PGL+PELYEAETR TYGSEAEPHP +NGA
Sbjct: 101 PGLRPELYEAETRPTYGSEAEPHPCNNGA 129

[Close]

BLAST of Moc04g07780 vs. ExPASy TrEMBL
Match: A0A5K0V3M1 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS576 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.3e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 4  SPGLQPELYEAETRLTYGSEAEPHPSSNGA 34
          SPGL+PELYE ETR  YGSEAEPHPSSNGA
Sbjct: 10 SPGLRPELYEVETRPMYGSEAEPHPSSNGA 39

The following BLAST results are available for this feature:

BLAST of Moc04g07780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG2611723.1	1.5e-04	86.21	hypothetical protein PVAP13_4KG148115 [Panicum virgatum]	[more]

BLAST of Moc04g07780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g07780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K0V3M1	4.3e-05	86.67	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS57...	[more]

BLAST of Moc04g07780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g07780.1	Moc04g07780.1	mRNA