Moc04g07550 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g07550
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 5359783 .. 5363042 (-)
RNA-Seq Expression	Moc04g07550
Synteny	Moc04g07550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTAGTCCCGCTAATCTCGCGACGGTTACACCCGGTAATCTCGGGACCGTCGGTTACACCCGGTGATCTCGGGACCGACGGTTACGCCCGATAATCACGCCGCAGACAGTTGCTCACATCGGCCCCTACCGGGCTCCCCGGTAGGTCGGACCTGGGCCAGGTTCACCTCGGTCCTCATACTTAGCTTTCTTCGGTGTTGGTGGCAGCCGTCTCGGCTATCCGAGCTGGGATGACTCATGAGCCATCTTGGAGCACCAATGGGGGTCCTCCACGTGTCCAGGGTATTCCCTTCCCCAAACAGATTTGGTTCTCTTTTTTGCATGAAAAATTATTTAAGTAATTGAATCTCCATTATTGGCCCTCTCCCCCACGACTTCTTTCGATCCTTGTCCATTTTCAACCTCATCCTTTCCTCTGCTCTCAATATAATTTTAGTTTCTTTAGTTATAAAATTACCATATTCCTTTTTAAAATATGAAAAAAAAATATCATACTACTTTAAACATAAAAATACGCTATATGTATAAGTTGTATAACACTAGCAAATAGATTACAATGTAGTTGGCTACAAATAATTATAAATATTGACAGTGTAAATTGTTGATACGTAAAAAGTCAAGGCCAATCGAACCAAGTGATTCGAATCTTACCCGATGGGTTGTTAATAGGGGAAAGACGAATTCCTGACTCGAACGACTGGATTGAAGATGATCTACACAAAGAAAATGTGAGCTAATGCTGGTGAGGTGCCGGCATACGTTCTGATGCTTAAGTCAGTGTACTCTTAAAGAAAGAGAGAGAATTGCATAGAAGTGTAGTGAGTTGTGTTGTTGTCGTTGTACCTCAATTGGATTGGGATCCTCGTATTTATAGGCTCATGGGGGAGGAGAAAGATTTATTTCCTTCCAAGCAATATGGTTGGGCTAAGATGTCTACGGTGGAGGTGTGCGCACCACGTTGGGTATGGCACGAAGGTGGGTAGGGTAGTGCTGCCATGGTGGCGTGCGCTTTTCATGCTCTAGCAAAGGTAGATGCGATGATCACAAAGGAGAAGGGGCACTGCAGTCGCTTGGGTCGCGCTCGCTTTGCGCGGAGGTCGCGCTCCTTGCATTGAGAAGAGGTACCGCGGCCAATTGAGGTGCGCTCGCTTGGCACGGAGAAGGATTGCGCGGAGGTCGCACTCCTTGCTTTGAGAAGGGGCACCGCAGCCAATTGGGTCGCACTTGCTTGGTGAAGAGGAGAGTTGTGCGGCCTTGGTGGTGGCGCGTGTGTGCCACGTTGGGCGCACGAGTATTGGGCCGATGGGCCGCTGTGGTGGTGTGTTTGCCACGCTTAAGGCGCACAGGTTGGGTCGATGGGCCACAATGGTGGCATGTATGTGGCACGCTTGGTGCGCAAGGGTTGAGCCGATGGGCCGCGGTGGTGGCGTGTATAAGCCATGCTTGGTGCGCACAGGTTGGGCCGATGGGCCGCAGTAATGGCGTGTATGAGCCATGCTTGGTGCGTACAGGTTGTGCCGATGGGCCGCAGTGGTACTTGCCCACGTGAGATTTTTGTATGACCTCCCAGCATAAATCAAACTAAATACACTATATATATATATTAGAAAGACAGAGAACTAAACTTGAACCAAATGAGAAATAGAGAGAAGCTTATACACAGCTGATCAAACAGATAGTAGCAATAACAACAATAACAATAGCAAACAAATTGATCATGTATATTACTAAAAGAGTGATGAAAGATAGTCGATGCTGCGTGAGGGCTGACCCGAAGATAATTTGTTTGTTTTGTTGCTAGCTAGCAGACTTAGCGATAGGAATGTTCATTTTCCCCAACTCCATCCCTGCGGGAACCCGTCTAAATGGGGCGGGGAATCTCTATTTAAATTCCCCACGGGGCGGGATGAGGAAAGTTTTTTCCCCGTCACTTAAATGGGAATGGGGACGGAGAATGCCCCGCGTCGCCTCGCATTTTTTTTAATATATTTATACACACACAAAAAATCTTATTATTCTTATACATACATATCTATCCATCAAATATATAGAGGAGGATTAGATCATGTAAATAAAGTTTTTATCATTGAAAATTAATTAATTAATTAGAAATTTTCTTAAGAAAAATGTTTAATTGAAAAATAATTTAAAAGTAAAAGAATAAACTGAGAAAAATGTTCGAACCCGATCCCCGCAAAATTTCGTGGGGAATTTTGCGGGGATGGAGAATTAAATGGAGGGCGGGGAAGTCTTCCCCATCCCCACCTCGTCCCATGAACATCCCTACTCTGCGATCATCTTAGTAAGATTCAACGACTAATTCTGATAGAACAACAATATTGAACTAGTCTGATCTGAGAGAACTCTTAGACAATTATATTCTCAATATAAACCTCAATCAACGAGAGTAAAAAAGAGATAATTATTGTGAAAGGAGGAGAAACTCGAATATAAGATGTTTGGGTGACTTTGGATTCATAGTGAAACAACAAAAGTGAAATTTTCTATACCAAAATTAGTTTCAAACACGTGTTCTGGCCTCTTATCAAAAAGCATGGTTGAGTGAAAGAAGAAAAATTACCCCCTCTAAAATATTATAGTTAAAAAAATTATATAAATGAAGTTAAAATTTTAAATCCACGTCCTCTAATTTTTGCCCTCCCAATTTTCAAATTTTCAAAATTATATATAAAAAAGTTTGGCTCATAACCATTTCTATTATTAGATATATCCATTACAACTGATTTACCTTTATACGAAATATATCCATTATAACTATGTTTGGTTGAGTGTTTTTGAGGCTAATTTTACAAATAATTATTAATTATTGTGCTACTTTTGCAAGGCCTAAAACTCTCATGAGAAAAGACACCATTAGTTACCATTAGTTCCCAACTCCACCTTTGGTGCAGGTCATCTTCTTTTGGTAGCTTCTTCATCCCTTCCCCATTGCGGTTCAGTCGATTTGGCAGAGGCTCAGGCTCTTCTTCGTGGTCTCCACTTGGCTTGTGAGACAGGTTTTCGTCCCATCTTTCTAGAGCCGGACTCCTTGCGGTGTTTCCGATCTCTCATCCAGAATACCGAGTACTTATCTGAGGTGGGGTGCCTCCTTAGTGAGGTACACAGGTGTTGCTCTTTGTTGGATCATATTTGCAAATGGCATCTGTCCAACAGCAGGATCGCATTTGGATTGAGGAGGTTCCATTTGAAATTTCCTTTTTGGTTGCTACTGATGGTTCTGTTTCCCTTTCCTAG

mRNA sequence

ATGGGTGGTAGTCCCGCTAATCTCGCGACGGTTACACCCGCCGTCTCGGCTATCCGAGCTGGGATGACTCATGAGCCATCTTGGAGCACCAATGGGGGTCCTCCACGTGTCCAGGGCTCATGGGGGAGGAGAAAGATTTATTTCCTTCCAAGCAATATGGTTGGGCTAAGATGTCTACGGTGGAGCAAAGGTAGATGCGATGATCACAAAGGAGAAGGGGCACTGCAGTCGCTTGGGTCGCGCTCGCTTTGCGCGGAGGTCGCGCTCCTTGCATTGAGAAGAGGGGCACCGCAGCCAATTGGGTCGCACTTGCTTGGTGAAGAGGAGAGTTGTGCGGCCTTGGTGGTGGCGCGTGTGTGCCACGTTGGGCGCACGAGTATTGGGCCGATGGGCCGCTGTGGTGGTGTGTTTGCCACGCTTAAGGCGCACAGGTTGGGTCGATGGGCCACAATGGTGGCATGTATGTGGCACGCTTGGTGCGCAAGGGTTGAGCCGATGGGCCGCGGTGGTGGCGTGTATAAGCCATGCTTGGTGCGCACAGGTCATCTTCTTTTGGTAGCTTCTTCATCCCTTCCCCATTGCGGTTCAGTCGATTTGGCAGAGGCTCAGGCTCTTCTTCGTGGTCTCCACTTGGCTTGTGAGACAGGTTTTCGTCCCATCTTTCTAGAGCCGGACTCCTTGCGGTGTTTCCGATCTCTCATCCAGAATACCGAGTACTTATCTGAGCAGGATCGCATTTGGATTGAGGAGGTTCCATTTGAAATTTCCTTTTTGGTTGCTACTGATGGTTCTGTTTCCCTTTCCTAG

Coding sequence (CDS)

ATGGGTGGTAGTCCCGCTAATCTCGCGACGGTTACACCCGCCGTCTCGGCTATCCGAGCTGGGATGACTCATGAGCCATCTTGGAGCACCAATGGGGGTCCTCCACGTGTCCAGGGCTCATGGGGGAGGAGAAAGATTTATTTCCTTCCAAGCAATATGGTTGGGCTAAGATGTCTACGGTGGAGCAAAGGTAGATGCGATGATCACAAAGGAGAAGGGGCACTGCAGTCGCTTGGGTCGCGCTCGCTTTGCGCGGAGGTCGCGCTCCTTGCATTGAGAAGAGGGGCACCGCAGCCAATTGGGTCGCACTTGCTTGGTGAAGAGGAGAGTTGTGCGGCCTTGGTGGTGGCGCGTGTGTGCCACGTTGGGCGCACGAGTATTGGGCCGATGGGCCGCTGTGGTGGTGTGTTTGCCACGCTTAAGGCGCACAGGTTGGGTCGATGGGCCACAATGGTGGCATGTATGTGGCACGCTTGGTGCGCAAGGGTTGAGCCGATGGGCCGCGGTGGTGGCGTGTATAAGCCATGCTTGGTGCGCACAGGTCATCTTCTTTTGGTAGCTTCTTCATCCCTTCCCCATTGCGGTTCAGTCGATTTGGCAGAGGCTCAGGCTCTTCTTCGTGGTCTCCACTTGGCTTGTGAGACAGGTTTTCGTCCCATCTTTCTAGAGCCGGACTCCTTGCGGTGTTTCCGATCTCTCATCCAGAATACCGAGTACTTATCTGAGCAGGATCGCATTTGGATTGAGGAGGTTCCATTTGAAATTTCCTTTTTGGTTGCTACTGATGGTTCTGTTTCCCTTTCCTAG

Protein sequence

MGGSPANLATVTPAVSAIRAGMTHEPSWSTNGGPPRVQGSWGRRKIYFLPSNMVGLRCLRWSKGRCDDHKGEGALQSLGSRSLCAEVALLALRRGAPQPIGSHLLGEEESCAALVVARVCHVGRTSIGPMGRCGGVFATLKAHRLGRWATMVACMWHAWCARVEPMGRGGGVYKPCLVRTGHLLLVASSSLPHCGSVDLAEAQALLRGLHLACETGFRPIFLEPDSLRCFRSLIQNTEYLSEQDRIWIEEVPFEISFLVATDGSVSLS

Homology

[Close]

BLAST of Moc04g07550 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 181 GHLLLVASSSLPHCGSVDLAEAQALLRGLHLACETGFRPIFLEPDSLRCFRSLIQNTEYL 240
           G +L  A+  L H  SVD AEA A + GL +A ETG  PI LE DSLR +    ++ E L
Sbjct: 125 GQVLASATKYLEHVASVDDAEALAAVEGLRVAMETGISPILLETDSLRIYNLFARDKEGL 184

Query: 241 SEQDRI 247
           S+   I
Sbjct: 185 SKTGSI 190

The following BLAST results are available for this feature:

BLAST of Moc04g07550 vs.


Match Name	E-value	Identity	Description

BLAST of Moc04g07550 vs.


Match Name	E-value	Identity	Description

BLAST of Moc04g07550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDQ4	7.0e-04	45.45	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

BLAST of Moc04g07550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 179..251 e-value: 5.1E-10 score: 39.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g07550.1	Moc04g07550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity