Moc04g06420 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g06420
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr4: 4425120 .. 4426373 (-)
RNA-Seq ExpressionMoc04g06420
SyntenyMoc04g06420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCATGGGAGGAACGACCTTCCATACTTAGCCAAATTCCAGATGACAAGAGTATGAACTGGAATAGCTACTCCCGACAGGCCAACCTTGGTCCCGACATGCTCAACCGCTCGTCGGATTCCTTGTCGGGTACCTCAACCTATAAATAGGGCACTTCACTCTTCAGGTATCGTATTCTAGCTCGACCTCCATACTAAGGTCGGACTCAAAACTGACTTGAGCGTCGAAGTGTTTACCTTCTTGTGCGGGTCCGCTCTAAGTGTTTAGGTCGAGACCGGAGACCGAGTTTGAACTTGGTTCGTGAAGAACCGTTGTGCAAACTCCTGCATAAACAAGTATAAATATTTAATTGGTTCAATTTGACACTACTACAATTTTAAATAATTTGATGGAAAAATTAAAAGGATTTTCTTATTTGGGGATGATCGATAGGAAATAAAAAGAACTAAAAAAGGAAAAAAAATCAATTTGTAGTAATTAGATGATTTTGTTTGTGTTTGGTAAGGATTTGAAAGTAGGGATTAAAAGTAAAAAAAAAAAAAAAGTAGTGTTTGGTTAAAATTTTAAAGAGTAATTTTAATCCACTAAACCGCATTTAAAAATTTTGTATAATTAAAAGCTAATTTGAGAAATTCTAAAAATAGAAAAAAAACGAAATACTTATAATGAAACATAATATATATTAGGACTTTAATTTCATTCGAGGGGATAATTAATTTTGGAAATTTTAAGACACCCTACCAATACCGATGAAGCATTCCGAATAGTGAAGGCTGGATTTCACTTTCATGGACCGAGGCCCATAAAACTCATAACCACTTCGACAGGACATTCATGTGGATGGGCCTATAGTGGGCCCAGGCCCATTAAGAGCGAGAACAATAAACGAGGGGCAATTAGGTCACTTCACGTCAAAAGTTTCACTGCCATTTCAGATTCTGGGTCAATTGAGCAAACGTGGGCATAATAGTCAATTTCCCGTCCTCACAGTCACGCCCGCGCCGCCCCCTCCGTCGCGATATTCTGCCTTCTCTTGGTCTCAGGTATTTTTCTCTATCGAGTTTCATTGCTTACAATGGATGAACCTCCAACCAATAGGAATTAAACCCCTCGATTTGATTGAACCAAGACTTTCCATTCGATTGTCGATTTTGCCGAAAACCATTGAACTGAAGCTTCATGAATGTGCTATCGAGTGA

mRNA sequence

ATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCATGGGAGGAACGACCTTCCATACTTAGCCAAATTCCAGATGACAAGAGTATGAACTGGAATAGCTACTCCCGACAGGCCAACCTTGGTCCCGACATGCTCAACCGCTCGTCGGATTCCTTGTCGGGAATTAAACCCCTCGATTTGATTGAACCAAGACTTTCCATTCGATTGTCGATTTTGCCGAAAACCATTGAACTGAAGCTTCATGAATGTGCTATCGAGTGA

Coding sequence (CDS)

ATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCATGGGAGGAACGACCTTCCATACTTAGCCAAATTCCAGATGACAAGAGTATGAACTGGAATAGCTACTCCCGACAGGCCAACCTTGGTCCCGACATGCTCAACCGCTCGTCGGATTCCTTGTCGGGAATTAAACCCCTCGATTTGATTGAACCAAGACTTTCCATTCGATTGTCGATTTTGCCGAAAACCATTGAACTGAAGCTTCATGAATGTGCTATCGAGTGA

Protein sequence

MADLRPSLKADLKVFPEDHSWEERPSILSQIPDDKSMNWNSYSRQANLGPDMLNRSSDSLSGIKPLDLIEPRLSIRLSILPKTIELKLHECAIE
Homology
[Close]
BLAST of Moc04g06420 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQIPDDKSMNWNSYSRQANLGPDMLNRSSDSL 60
          MADLRPSLKADLKVFPEDHSWEERPSILSQ+PDDKSMNWNSYSRQA+LGPDMLNR SDSL
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60

Query: 61 SGIKP 66
          SG  P
Sbjct: 61 SGGLP 65

[Close]
BLAST of Moc04g06420 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0 

Query: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQIPDDKSMNWNSYSRQANLGPDMLNRSSDSL 60
          MADLRPSLKADLKVFPEDHSWEERPSILSQ+PDDKSMNWNSYSRQA+LGPDMLNR SDSL
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60

Query: 61 SGIKP 66
          SG  P
Sbjct: 61 SGGLP 65

The following BLAST results are available for this feature:
BLAST of Moc04g06420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143495.13.0e-2592.31LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
BLAST of Moc04g06420 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g06420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNY71.5e-2592.31Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1[more]
BLAST of Moc04g06420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g06420.1Moc04g06420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity