Moc04g06210 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g06210
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr4: 4263573 .. 4263996 (+)
RNA-Seq Expression	Moc04g06210
Synteny	Moc04g06210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAAACTTTGGAGGAGAGACTAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGCAAATATCAGAATGACACTATCAATGGGGGTATGCAGTCTCGTGGCAAAAGAGACGACCGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGCCAATACAAAAATATTTCTATGGACGAAGTATTTTAATATCCACATGGAGGAGGGAACCTCGAAGAATTCTCACATTAATGAGCTCACCGATATCTTGAACAAGTTTGAGTGTCAAGATTGAGGAAAATGTGAAGGCTATGAGGTTGTTGACATCTTTGCCTGATAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGCTATGA

mRNA sequence

ATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAAACTTTGGAGGAGAGACTAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGCAAATATCAGAATGACACTATCAATGGGGGTATGCAGTCTCGTGGCAAAAGAGACGACCGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGTTTGAGTGTCAAGATTGAGGAAAATGTGAAGGCTATGAGGTTGTTGACATCTTTGCCTGATAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGCTATGA

Coding sequence (CDS)

ATGCAAGTAAAGGATCTTCTTACGTGCAAGAAGATACACAAAACTTTGGAGGAGAGACTAGCGGATATGACAGACAAAGCTTGGAATGAGATGGATGAGCAGGCCGTTGCAAATATCAGAATGACACTATCAATGGGGGTATGCAGTCTCGTGGCAAAAGAGACGACCGCAAAAGAGTTGTTGAAGGCCTTGCAAGACAGTTTGAGTGTCAAGATTGAGGAAAATGTGAAGGCTATGAGGTTGTTGACATCTTTGCCTGATAGTTGGGAGACGATGAAGACCGCGGTGTCGAATTCGCTATGA

Protein sequence

MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKELLKALQDSLSVKIEENVKAMRLLTSLPDSWETMKTAVSNSL

Homology

[Close]

BLAST of Moc04g06210 vs. NCBI nr
Match: KHN11113.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 71.2 bits (173), Expect = 5.5e-09
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
           MQ++D L  KK+++ L  +  DM  + WN +D QA+  IR+TL+  V   +  E T   L
Sbjct: 23  MQMEDYLYQKKVYQPLSNKPDDMRQEEWNLLDRQALGVIRLTLAKNVAFNIVNEKTIAGL 82

Query: 61  LKALQDSL-------SVKIEENVKAMRLLTSLPDSWETMKTAVSNS 100
           +KAL D          +K E+ VKA+  L+SLPDSW    TAVS+S
Sbjct: 83  MKALSDMYEKPSAVNKIKFEDEVKALISLSSLPDSWAATVTAVSSS 128

[Close]

BLAST of Moc04g06210 vs. NCBI nr
Match: VFQ90050.1 (unnamed protein product, partial [Cuscuta campestris])

HSP 1 Score: 67.4 bits (163), Expect = 8.0e-08
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
           MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK +
Sbjct: 22  MQIEDLLVQKDLDVVLGDKPEKMSDANWAGLDRKAMSVIRLSLTKNVAFNILKEKTAKGI 81

Query: 61  LKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVSNSL 101
           + AL +   S+ +K ++ V+A+ LL+SLPDSW    TAV+ S+
Sbjct: 82  MDALSNILLSVGIKFDDEVQALLLLSSLPDSWSGTVTAVTGSV 124

[Close]

BLAST of Moc04g06210 vs. NCBI nr
Match: KHN41430.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLE-ERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKE 60
           MQ++D L  KK+++ L   +  DM  + WN +D QA+  IR+TL+  V   +  E T   
Sbjct: 23  MQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVIRLTLAKNVAFNIVNEKTTAG 82

Query: 61  LLKALQD-----------SLSVKIEENVKAMRLLTSLPDSWETMKTAVSNS 100
           L+KAL D           S+ +K E+ VKA+ LL+SLP+SW    T VS+S
Sbjct: 83  LMKALSDMYEKPSAAKKESVQIKFEDEVKALILLSSLPNSWAATVTIVSSS 133

[Close]

BLAST of Moc04g06210 vs. NCBI nr
Match: VFQ93322.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 38/102 (37.25%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
           MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK +
Sbjct: 22  MQIEDLLVQKDLDVVLGDKPEKMSDADWAGLDRKAMSVIRLSLTKNVAFNILKEKTAKGI 81

Query: 61  LKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVSNS 100
           + AL +   S+ +K ++ V+A+ LL+SLPD+W    TAV++S
Sbjct: 82  MDALSNILLSVGIKFDDEVQALLLLSSLPDTWSGTVTAVTSS 123

[Close]

BLAST of Moc04g06210 vs. NCBI nr
Match: RVW89488.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 1   MQVKDLLTCKKIH-KTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKE 60
           MQ++D L  +K+H   L  +   M  K W  +D Q +  IR+T+S  V   V KE T  +
Sbjct: 1   MQIEDYLYGRKLHLPLLGTKPRSMKAKEWALLDRQVIGVIRLTMSRSVAHNVVKEKTTAD 60

Query: 61  LLKALQDSLSVKIEENVKAMRLLTSLPDSWETMKTAVSNSL 101
           L+KAL +   +  ++ ++A+ +L SLP+SWE M+ A+SNS+
Sbjct: 61  LMKALSE---IDFDDEIRALIVLASLPNSWEPMRMAISNSI 98

[Close]

BLAST of Moc04g06210 vs. ExPASy TrEMBL
Match: A0A0B2PTN8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja OX=3848 GN=glysoja_033667 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
           MQ++D L  KK+++ L  +  DM  + WN +D QA+  IR+TL+  V   +  E T   L
Sbjct: 23  MQMEDYLYQKKVYQPLSNKPDDMRQEEWNLLDRQALGVIRLTLAKNVAFNIVNEKTIAGL 82

Query: 61  LKALQDSL-------SVKIEENVKAMRLLTSLPDSWETMKTAVSNS 100
           +KAL D          +K E+ VKA+  L+SLPDSW    TAVS+S
Sbjct: 83  MKALSDMYEKPSAVNKIKFEDEVKALISLSSLPDSWAATVTAVSSS 128

[Close]

BLAST of Moc04g06210 vs. ExPASy TrEMBL
Match: A0A0D3AR70 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-08
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
           MQ++D L  KK+H+ L ++   M    W  +D Q +  IR+TLS  V   VAKE TA+ L
Sbjct: 1   MQIEDYLYGKKLHQPLSKKPEKMDQDVWELLDRQVLGVIRLTLSKNVAHNVAKEKTAEGL 60

Query: 61  LKALQD--------------------------------SLSVKIEENVKAMRLLTSLPDS 101
           +K L D                                S+ ++ ++ V+A+ LL SLP+S
Sbjct: 61  MKVLSDMYEKPLANNKMEEGGLVAAHVNEFNTIVNQLSSVEIEFDDEVRALILLASLPNS 120

[Close]

BLAST of Moc04g06210 vs. ExPASy TrEMBL
Match: A0A484MMH6 (Uncharacterized protein (Fragment) OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS31826 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
           MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK +
Sbjct: 22  MQIEDLLVQKDLDVVLGDKPEKMSDANWAGLDRKAMSVIRLSLTKNVAFNILKEKTAKGI 81

Query: 61  LKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVSNSL 101
           + AL +   S+ +K ++ V+A+ LL+SLPDSW    TAV+ S+
Sbjct: 82  MDALSNILLSVGIKFDDEVQALLLLSSLPDSWSGTVTAVTGSV 124

[Close]

BLAST of Moc04g06210 vs. ExPASy TrEMBL
Match: A0A0B2S897 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja OX=3848 GN=glysoja_031063 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-08
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLE-ERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKE 60
           MQ++D L  KK+++ L   +  DM  + WN +D QA+  IR+TL+  V   +  E T   
Sbjct: 23  MQIEDYLYQKKLYQPLSGVKPEDMKQEEWNLLDRQALGVIRLTLAKNVAFNIVNEKTTAG 82

Query: 61  LLKALQD-----------SLSVKIEENVKAMRLLTSLPDSWETMKTAVSNS 100
           L+KAL D           S+ +K E+ VKA+ LL+SLP+SW    T VS+S
Sbjct: 83  LMKALSDMYEKPSAAKKESVQIKFEDEVKALILLSSLPNSWAATVTIVSSS 133

[Close]

BLAST of Moc04g06210 vs. ExPASy TrEMBL
Match: A0A484MWS8 (CCHC-type domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS35098 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-08
Identity = 38/102 (37.25%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
           MQ++DLL  K +   L ++   M+D  W  +D +A++ IR++L+  V   + KE TAK +
Sbjct: 22  MQIEDLLVQKDLDVVLGDKPEKMSDADWAGLDRKAMSVIRLSLTKNVAFNILKEKTAKGI 81

Query: 61  LKALQD---SLSVKIEENVKAMRLLTSLPDSWETMKTAVSNS 100
           + AL +   S+ +K ++ V+A+ LL+SLPD+W    TAV++S
Sbjct: 82  MDALSNILLSVGIKFDDEVQALLLLSSLPDTWSGTVTAVTSS 123

[Close]

BLAST of Moc04g06210 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 23/66 (34.85%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 1  MQVKDLLTCKKIHKTLEERLADMTDKAWNEMDEQAVANIRMTLSMGVCSLVAKETTAKEL 60
          M+++D L  KK+H+ L +++  M+   WN +  Q +  IR+T+S  +   VAKE +   L
Sbjct: 19 MKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDGL 78

Query: 61 LKALQD 67
          +K L D
Sbjct: 79 MKVLSD 84

The following BLAST results are available for this feature:

BLAST of Moc04g06210 vs. NCBI nr


Match Name	E-value	Identity	Description
KHN11113.1	5.5e-09	40.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so...	[more]
VFQ90050.1	8.0e-08	37.86	unnamed protein product, partial [Cuscuta campestris]	[more]
KHN41430.1	1.4e-07	38.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so...	[more]
VFQ93322.1	1.4e-07	37.25	unnamed protein product [Cuscuta campestris]	[more]
RVW89488.1	1.4e-07	37.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc04g06210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g06210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B2PTN8	2.7e-09	40.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin...	[more]
A0A0D3AR70	3.0e-08	33.33	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1	[more]
A0A484MMH6	3.9e-08	37.86	Uncharacterized protein (Fragment) OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS...	[more]
A0A0B2S897	6.6e-08	38.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin...	[more]
A0A484MWS8	6.6e-08	37.25	CCHC-type domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCU...	[more]

BLAST of Moc04g06210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29785.1	1.2e-04	34.85	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 1..64
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g06210.1	Moc04g06210.1	mRNA