Moc04g05850 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g05850
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Keratin, type II cytoskeletal 1-like
Location	chr4: 3987757 .. 3990492 (+)
RNA-Seq Expression	Moc04g05850
Synteny	Moc04g05850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTTCGACAAACATGGAAGCTGATTCCACCGACACCGATGCAATGTCCGTCAGTCAATTAATTAATCCAGGAAACAAGATTTCGATCGTGAAGCTTACGGATGATTATTTCCTTTCGTGGAAATTTCAAGTACTCACTACTTTGGAAGGTCACGGATTAGAGTCGTACATTGAAGATGAAATTGATCCTCCTCTGCAATTTATTCAGGTCATTAATGGAACCTCTACTAGTTCGAAATTGAACCCGATTTTTACTAAGTGGAAACGACAGGATAAATTGATTTCATCTTGGTTGCTCGGCTCCATGTCTGAGGATTTTCTTGAACAAATGCTACATTGCAAGTCTGCTAGAGAAATTTGGACCTGTTTATTACAGATTTTTATTTCTCGCAATCTTGCACAAGTAATGAAAATTAAATCGAAGTTGCATAATCTCCAAAAAAGGTAGTTCTTCTCTGAAAGAATATTTCTCGCAAGTTAAGAAGTGTATTGATGCTTTAGCGGCGTTTCAATCTATGATACCAGTGCAAAATTCGGTCCTCAAACCGTTCAAGAGGTTATGGCTCTACTCTTGACACTTGACACAAGAAAATAGGAATGACAGCAAAAAGGTTGTGGTGAATTCGGATGGCACTCCTCCATCGGCTAATCTCCTTACTCATGCTCCTACTATGGGAAAGGAGAATGAGAATCCTATATATTCTAATGTTCCTCAGTATACTTCTGGTTCTAATAATAGGACTCGCGGTCGACATAATAGAGGCGGAAAACAGTGGAATAATTGAGGTCGTGTTCAATGTCAGTTATGTGGTCGGTTTAGACATACATTTTTCCAGTGGCTCCTCTCAAATGTCTGCTTTACTTACTGCCAATCAGGATATGAATTGGTATCCGGATTCAGGTGCTACTAATCATTTGAGGAACAATCTTACCAATCTGTCTATTGGTACAGAATACACTGGAGGAAACCAGGTGCAAGTCGAGAATGGTGCAGGTCTGAAAATTTTTCACTTTGGCCATACATCTTTTCAAACTTCAAATAATCATATCCTTCATCTCAATAACTTACTTCATGTCCCTCATATTACCAAAAACTTGATAAGTGTTAATCAGTTTGTTAGAGATAACTTAGTCTTTTTTGAATTTCTCCTATTTTTTGCTATGTGAAGGACCACCGTACTACCATTCTTCTCCAAGGGACTCTGCATGATGGACTGTACCGGTTTCATCTTTCTCCTCTTTCTTCTGCTCCTATGTCTACCGCTAGCCCTTCTTCTCAAGTCTTGTCTCCAACACCAGCTGCTCTGTTTTCGTCTTCTACCTCCTTGTCCCCTGCTGTGTCTCCTTCTCCTATTGATTTGTGGCATAGGCAACTTGGGTACCCTGCCTTTCCTATTGTTAGAAAAATAATAAATGTGTTCAAACGATTTAAATCTTCTTCTATGGCATTTCATTTTTGTAATGTTTGTGCTATGTGTAAATCTCATGCTCTTCCGTTCCGTTTACTCCTACTGCGGTTTATACTGCTCCATTGCAATTAATTGTCTTTGATTTGTGGGGTCTTGCATTTACACCCTCTAATGGCTTTAAATATTACATTAGTTTTGTTGATGCTTTTTCACGTTATACTTAGATTTATTTTCTTCGATCCAAGTCGGATGCCTTCTCTGTTTTTCTTCAATTTAAAACTATTGGTTGAGAAACATCTGAGATGCTCTATTATTTGTTCTCAATCTGACGGGGGTGGTGAATTTAAGCTCTTTACTTATTTTCTTCAAAAACATGGCATTATTCATCACCTTACATGTCCTCACACGTCTAAACAAAATGGGATTCTTGAGCGCAAGAATCGTCACATTGTTGATACTTGGTTAACTTTGTTATCTCAGTCTTCTATGGATGATGCCTTTTCTACATCTGTCTATCTCATTAACCAGTTACCTTCCACAATCCTTGGTGATGTGATTTCTTTGGAGAAGCTATTATGTCACAAACCTAACCATGCTTGGTTAAAGGTTTTTAGATGTCAACGTTTTCCTTGTTTGCGTTCTTTTAATGCTCACAAGCTCGATTTTCGTTCTCAACCTTGCACTTTTAATTTATTGGTTATAGTAACACATATAAAGGCTATAAGTTTGTCGTCTACCGGTAAGGTCTTTGTGTTTCGAAATGTTATTTTTTATGAGCATTCTTTCCCTTTTGCTAACCTTTCTATTCAGTCTATTCAGACTTATTTTTCTCCTCCTTTTTCGAACATCTCTTCGACTGCCTCTACAGATTTCCCTATTCCTCTGTTGTCCAACTCACCATCACCTACTTTAGCTGTTTCTTTCCCCCAATCGCTGCACCTATCCCCTCTGTATCTGGTTCTTCTCCAGCTATTCCTGTATCAGCTGACAATCGTCCGACTTTTGCCGTTCGTACTGTTGCTTGTTCTATACCTGCTGCTGTCAGTTCTATTTCGGCTCCTCGTGTACCGTCTATGCCTCTTGATGGGTCACATCTGGTGCCTAGTGATTCTCCATCTTTGCCTGTTGGTTCTTTGACTGTTGGTACCGAGGCCGTTGTCCCCACTGGTTCTTTAAATGTGTCCTTATCTGATGGTTCTCTCACTGTGCCTGTCCATGAAGTTGGCACTTCGTCTCAGCGGTTTGTTCTGATCTTCCTCCTTCGGCTCCCACTGTTTCGGTTCCCTCTTCTTCTTATGTACAAAATTCTCATTCGATGGTGA

mRNA sequence

ATGGAAACTTCGACAAACATGGAAGCTGATTCCACCGACACCGATGCAATGTCCGTCAGTCAATTAATTAATCCAGGAAACAAGATTTCGATCGTGAAGCTTACGGATGATTATTTCCTTTCGTGGAAATTTCAAGTACTCACTACTTTGGAAGGTCACGGATTAGAGTCGTACATTGAAGATGAAATTGATCCTCCTCTGCAATTTATTCAGGTCATTAATGGAACCTCTACTAGTTCGAAATTGAACCCGATTTTTACTAAGTGGAAACGACAGGATAAATTGATTTCATCTTGGTTGCTCGGCTCCATGTCTGAGGATTTTCTTGAACAAATGCTACATTGCAAGTCTGCTAGAGAAATTTGGACCTGTTTATTACAGATTTTTATTTCTCGCAATCTTGCACAAGTAATGAAAATTAAATCGAAGTTGCATAATCTCCAAAAAAGGAATGACAGCAAAAAGGTTGTGGTGAATTCGGATGGCACTCCTCCATCGGCTAATCTCCTTACTCATGCTCCTACTATGGGAAAGGAGAATGAGAATCCTATATATTCTAATGTTCCTCAGTATACTTCTGGTTCTAATAATAGGACTCGCGGTGCTACTAATCATTTGAGGAACAATCTTACCAATCTGTCTATTGGTACAGAATACACTGGAGGAAACCAGGACCACCGTACTACCATTCTTCTCCAAGGGACTCTGCATGATGGACTGTACCGGTTTCATCTTTCTCCTCTTTCTTCTGCTCCTATGTCTACCGCTAGCCCTTCTTCTCAAGTCTTGTCTCCAACACCAGCTGCTCTGTTTTCGTCTTCTACCTCCTTGTCCCCTGCTGTGTCTCCTTCTCCTATTGATTTGTGGCATAGGCAACTTGGATTTCCCTATTCCTCTGTTGTCCAACTCACCATCACCTACTTTAGCTGTTTCTTTCCCCCAATCGCTGCACCTATCCCCTCTGTATCTGGTTCTTCTCCAGCTATTCCTGTATCAGCTGACAATCGTCCGACTTTTGCCGTTCGTACTGTTGCTTGTTCTATACCTGCTGCTGTCAGTTCTATTTCGGCTCCTCGTGTACCGTCTATGCCTCTTGATGGGTCACATCTGGTGCCTAGTGATTCTCCATCTTTGCCTGTTGGTTCTTTGACTGTTGGTACCGAGGCCGTTGTCCCCACTGGTTCTTTAAATGTGTCCTTATCTGATGGTTCTCTCACTGTGCCTGTCCATGAAGTTGGCACTTCGTCTCAGCGGTTTGTTCTGATCTTCCTCCTTCGGCTCCCACTGTTTCGGTTCCCTCTTCTTCTTATGTACAAAATTCTCATTCGATGGTGA

Coding sequence (CDS)

ATGGAAACTTCGACAAACATGGAAGCTGATTCCACCGACACCGATGCAATGTCCGTCAGTCAATTAATTAATCCAGGAAACAAGATTTCGATCGTGAAGCTTACGGATGATTATTTCCTTTCGTGGAAATTTCAAGTACTCACTACTTTGGAAGGTCACGGATTAGAGTCGTACATTGAAGATGAAATTGATCCTCCTCTGCAATTTATTCAGGTCATTAATGGAACCTCTACTAGTTCGAAATTGAACCCGATTTTTACTAAGTGGAAACGACAGGATAAATTGATTTCATCTTGGTTGCTCGGCTCCATGTCTGAGGATTTTCTTGAACAAATGCTACATTGCAAGTCTGCTAGAGAAATTTGGACCTGTTTATTACAGATTTTTATTTCTCGCAATCTTGCACAAGTAATGAAAATTAAATCGAAGTTGCATAATCTCCAAAAAAGGAATGACAGCAAAAAGGTTGTGGTGAATTCGGATGGCACTCCTCCATCGGCTAATCTCCTTACTCATGCTCCTACTATGGGAAAGGAGAATGAGAATCCTATATATTCTAATGTTCCTCAGTATACTTCTGGTTCTAATAATAGGACTCGCGGTGCTACTAATCATTTGAGGAACAATCTTACCAATCTGTCTATTGGTACAGAATACACTGGAGGAAACCAGGACCACCGTACTACCATTCTTCTCCAAGGGACTCTGCATGATGGACTGTACCGGTTTCATCTTTCTCCTCTTTCTTCTGCTCCTATGTCTACCGCTAGCCCTTCTTCTCAAGTCTTGTCTCCAACACCAGCTGCTCTGTTTTCGTCTTCTACCTCCTTGTCCCCTGCTGTGTCTCCTTCTCCTATTGATTTGTGGCATAGGCAACTTGGATTTCCCTATTCCTCTGTTGTCCAACTCACCATCACCTACTTTAGCTGTTTCTTTCCCCCAATCGCTGCACCTATCCCCTCTGTATCTGGTTCTTCTCCAGCTATTCCTGTATCAGCTGACAATCGTCCGACTTTTGCCGTTCGTACTGTTGCTTGTTCTATACCTGCTGCTGTCAGTTCTATTTCGGCTCCTCGTGTACCGTCTATGCCTCTTGATGGGTCACATCTGGTGCCTAGTGATTCTCCATCTTTGCCTGTTGGTTCTTTGACTGTTGGTACCGAGGCCGTTGTCCCCACTGGTTCTTTAAATGTGTCCTTATCTGATGGTTCTCTCACTGTGCCTGTCCATGAAGTTGGCACTTCGTCTCAGCGGTTTGTTCTGATCTTCCTCCTTCGGCTCCCACTGTTTCGGTTCCCTCTTCTTCTTATGTACAAAATTCTCATTCGATGGTGA

Protein sequence

METSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHNLQKRNDSKKVVVNSDGTPPSANLLTHAPTMGKENENPIYSNVPQYTSGSNNRTRGATNHLRNNLTNLSIGTEYTGGNQDHRTTILLQGTLHDGLYRFHLSPLSSAPMSTASPSSQVLSPTPAALFSSSTSLSPAVSPSPIDLWHRQLGFPYSSVVQLTITYFSCFFPPIAAPIPSVSGSSPAIPVSADNRPTFAVRTVACSIPAAVSSISAPRVPSMPLDGSHLVPSDSPSLPVGSLTVGTEAVVPTGSLNVSLSDGSLTVPVHEVGTSSQRFVLIFLLRLPLFRFPLLLMYKILIRW

Homology

[Close]

BLAST of Moc04g05850 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 5.3e-35
Identity = 81/141 (57.45%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 17  MSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGT 76
           +  S+ INPG+K+SIV+L DD  L WKFQ+ T L+G+GLESYI+   D P QF+Q     
Sbjct: 16  IQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDE 75

Query: 77  STSSKL--NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNL 136
           S+SS L  NP + +W +QDKLIS+WLLGSM+ED L QML CKSAREIWT L  +F SR L
Sbjct: 76  SSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTL 135

Query: 137 AQVMKIKSKLHNLQKRNDSKK 156
           A+VM++K KL N +K N S K
Sbjct: 136 ARVMQLKLKLENFKKGNLSLK 156

[Close]

BLAST of Moc04g05850 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 5.8e-34
Identity = 79/152 (51.97%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAR 122
            +PP +++ +  G+S++S     NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+
Sbjct: 64  SEPPSKYL-ISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 123

Query: 123 EIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN 152
           EIW  L  IF SR LAQ MK K+KLHN++K +
Sbjct: 124 EIWGTLQGIFSSRYLAQAMKFKNKLHNIKKES 153

[Close]

BLAST of Moc04g05850 vs. NCBI nr
Match: TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 5.8e-34
Identity = 79/152 (51.97%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAR 122
            +PP +++ +  G+S++S     NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+
Sbjct: 64  SEPPSKYL-ISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 123

Query: 123 EIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN 152
           EIW  L  IF SR LAQ MK K+KLHN++K +
Sbjct: 124 EIWGTLQGIFSSRYLAQAMKFKNKLHNIKKES 153

[Close]

BLAST of Moc04g05850 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 7.6e-34
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSARE 122
            +PP +++     +S S+    NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+E
Sbjct: 64  SEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKE 123

Query: 123 IWTCLLQIFISRNLAQVMKIKSKLHNLQK 150
           IW  L  IF SR LAQ M+ K+KLHN++K
Sbjct: 124 IWETLQGIFSSRYLAQAMQFKNKLHNIKK 151

[Close]

BLAST of Moc04g05850 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 7.6e-34
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSARE 122
            +PP +++     +S S+    NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+E
Sbjct: 64  SEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKE 123

Query: 123 IWTCLLQIFISRNLAQVMKIKSKLHNLQK 150
           IW  L  IF SR LAQ M+ K+KLHN++K
Sbjct: 124 IWETLQGIFSSRYLAQAMQFKNKLHNIKK 151

[Close]

BLAST of Moc04g05850 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-10
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 27  NKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIF 86
           N  ++ KLT   +L W  QV    +G+ L  +++     P   I    GT  + ++NP +
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATI----GTDAAPRVNPDY 78

Query: 87  TKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIKSKLHN 146
           T+WKRQDKLI S +LG++S      +    +A +IW  L +I+ + +   V +++++L  
Sbjct: 79  TRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQ 137

Query: 147 LQK 150
             K
Sbjct: 139 WTK 137

[Close]

BLAST of Moc04g05850 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-09
Identity = 34/115 (29.57%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 27  NKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGTSTSSKLNPIF 86
           N  ++ KLT   +L W  QV    +G+ L  +++     P   I    GT    ++NP +
Sbjct: 19  NMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATI----GTDAVPRVNPDY 78

Query: 87  TKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNLAQVMKIK 142
           T+W+RQDKLI S +LG++S      +    +A +IW  L +I+ + +   V +++
Sbjct: 79  TRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR 129

[Close]

BLAST of Moc04g05850 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.5e-35
Identity = 81/141 (57.45%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 17  MSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDEIDPPLQFIQVINGT 76
           +  S+ INPG+K+SIV+L DD  L WKFQ+ T L+G+GLESYI+   D P QF+Q     
Sbjct: 16  IQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDE 75

Query: 77  STSSKL--NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAREIWTCLLQIFISRNL 136
           S+SS L  NP + +W +QDKLIS+WLLGSM+ED L QML CKSAREIWT L  +F SR L
Sbjct: 76  SSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTL 135

Query: 137 AQVMKIKSKLHNLQKRNDSKK 156
           A+VM++K KL N +K N S K
Sbjct: 136 ARVMQLKLKLENFKKGNLSLK 156

[Close]

BLAST of Moc04g05850 vs. ExPASy TrEMBL
Match: A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-34
Identity = 79/152 (51.97%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAR 122
            +PP +++ +  G+S++S     NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+
Sbjct: 64  SEPPSKYL-ISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 123

Query: 123 EIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN 152
           EIW  L  IF SR LAQ MK K+KLHN++K +
Sbjct: 124 EIWGTLQGIFSSRYLAQAMKFKNKLHNIKKES 153

[Close]

BLAST of Moc04g05850 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-34
Identity = 79/152 (51.97%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+    NKIS+VKL+DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSSKL---NPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSAR 122
            +PP +++ +  G+S++S     NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+
Sbjct: 64  SEPPSKYL-ISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAK 123

Query: 123 EIWTCLLQIFISRNLAQVMKIKSKLHNLQKRN 152
           EIW  L  IF SR LAQ MK K+KLHN++K +
Sbjct: 124 EIWGTLQGIFSSRYLAQAMKFKNKLHNIKKES 153

[Close]

BLAST of Moc04g05850 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.7e-34
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSARE 122
            +PP +++     +S S+    NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+E
Sbjct: 64  SEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKE 123

Query: 123 IWTCLLQIFISRNLAQVMKIKSKLHNLQK 150
           IW  L  IF SR LAQ M+ K+KLHN++K
Sbjct: 124 IWETLQGIFSSRYLAQAMQFKNKLHNIKK 151

[Close]

BLAST of Moc04g05850 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.7e-34
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 0


Query: 3   TSTNMEADSTDTDAMSVSQLINPGNKISIVKLTDDYFLSWKFQVLTTLEGHGLESYIEDE 62
           TS+ +  ++T+  +  ++Q+   GNKIS+VKL DD FL WKFQ+LT LE + LE+++E E
Sbjct: 4   TSSLLGVENTEASS-PINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESE 63

Query: 63  IDPPLQFIQVINGTSTSS--KLNPIFTKWKRQDKLISSWLLGSMSEDFLEQMLHCKSARE 122
            +PP +++     +S S+    NP +  WKRQD+LISSWLLGSMSE+ L QMLHCKSA+E
Sbjct: 64  SEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKE 123

Query: 123 IWTCLLQIFISRNLAQVMKIKSKLHNLQK 150
           IW  L  IF SR LAQ M+ K+KLHN++K
Sbjct: 124 IWETLQGIFSSRYLAQAMQFKNKLHNIKK 151

The following BLAST results are available for this feature:

BLAST of Moc04g05850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	5.3e-35	57.45	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0067213.1	5.8e-34	51.97	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
TYK18917.1	5.8e-34	51.97	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0048297.1	7.6e-34	52.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	7.6e-34	52.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Moc04g05850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.2e-10	30.08	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.3e-09	29.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc04g05850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLT9	2.5e-35	57.45	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5D3D5T2	2.8e-34	51.97	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VGJ8	2.8e-34	51.97	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U233	3.7e-34	52.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	3.7e-34	52.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Moc04g05850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 89..152 e-value: 1.8E-6 score: 27.8
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 39..153
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 39..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g05850.1	Moc04g05850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding