Moc04g05660 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g05660
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein RADIALIS-like 1
Location	chr4: 3837212 .. 3839751 (+)
RNA-Seq Expression	Moc04g05660
Synteny	Moc04g05660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCGTCTCGTGGGTCGAGTGCATGGACTGCAATGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAGTGTATGATCAAGACACGCCCGAGCGATGGCTGAATGTTGCAAAGGCTGTTGGAGAGAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAGCATATCGAATCCGGTCATGTTCCCTTCCCCTATCAAACCTCGAACGATGATGATTTTCCGACAAAAAGAGGTATATGGTAGTCTTTACGTTAGAATATTAATAAAGATTTGTTAAGAACAATGGTATTCCAAGTATCCCTCGTATCTCCATAGGGTTACGGCTTAACTTTTAGTTTCACCCAAAAGACCTCATACTAGTGGATATAAGTGTCCATTATATATCATGGGACTCACTCTCTTCCCTAGTTAGTACTTGCCCTTTGACGACGTAAAAAAATGTCACGATAATGTCACAATGCTCACACATTTCGGCTTTTTTATACTTCAAATTTATGTCACGACACCTAATCATATATTTGAGATTCTCTTATATTGACATTGATCTTCTACATTATTTGAATGAATTTGAACCGAACTTATTTGAGGATTAAGAGCTCCCAGATTTAACAGTTTTTTTTTCTCTCAGGATGAGAAACAAGAGCTAATCATTGAACCAGCTGGTGCAGTAGCTGGAAGAATAAAAGAAGAAAGAAGCATTTGAATTTTCTTCCTATATGTAACCCTTTAAATGTAATTGTACTACTCAAAGAATAAAGAAGAGTTTTATTTTGAAATTTTGTTCCTCTCAAAGAGGAGAGATTTGGTTTTGTACTTATGGTATGTATATGGCATTCATATCTATAAGGAATGTCTTGAATAAATATCCAAATTTTCTTAGAAGGGTTTAAAATCCAAATTTGGAAAGATTCTTCATTTCGTAGTTTTATAGTACAAAATATATAATCATTGATCATACATCCTTTTTTTCTTTTTTCCTTAACCAAACGTAGAGGTGGATTAAAATCTCTGACTTTTTAGTCAAAAATATATGTCTTAATCAATTTAAATCTCTCCACATGGCATGATATTGTCCGCTTTGGACATAGCCCTTACGGCTTGGCTTTTGGTTTCACCCAAAAGGCCTCATACCAATGGAGTAATTGTCTCTCCCTTATATATCCATGATCATTCTATTTCCTAGCCAAGTGGGACTTTGTTTGCAATCACCTTACAAACCCAACATATTTAACATTAAAAACAAATGCAAATTAACTTATATAAAACGACAATGTTAAAGAATTATTTAGGTTTTTAATCCATATACTTATAATCTTTTGTCATTTTTTAAGTATATAATAATATGTGAAGTTTTGGAGATTTAAATTTGTGACCTTTTAGTCAGGATATATATTTTAACAAGTTAATTATACTTTATTTTAGTAGAATAAATATATATGAGAATTGAGAATTGAATCTTTAACCTCTAAAAAATTAGCAAAATGTCTTAACCACTAAGCTATACGCATTCATTCTTTTTAAGTTGTCAAGGTTTATACTTTTTTCCATTTTGATTTTCGTATTTCAAAAGGTTTCATTTTAGTCAATGTATTTAAAAAGAATGGTTTTAGTCCTTTTGCTTTTTTTTTTTTATCTTATGTTTTTCTACCGCAACTTCAAAATAATACTACGCTCAGTACACTTCTTGAAATATTGATGAAATATTTGCATAGCCTTTAAGTTTTTTGTTATGTATGAGAATTTGTGTTATAATTTTGCATACAGGAACCAAATTATCATTTTCTAGAATACAAAAACCAACAAAGACGTTTCAAAAGTATATATAGGGATAAAAAATTGACAAAATTTGAAAGTATGGATCAAAATGGACATTTTAAAATATATGGATTAAAATAAATAAAATCCGAAAATAAGATATACCAAATAATATTTCAACATATTTTTTTATAAGCAATGAAATTAGTATTAAAAGATAGTTAAATTAGTACCCCTCAAAACCAAATTAGAAATTTGCTAAAAACCAACCAACCAATCACACTAAATTCAAACACTACCAAAATTGATCTTCGTCCAAATATAGCCTCTCAAAAAGAGAGAATTTAAAAATTAAAAAAAAAACAAAAAAAAAACAAACAAACATCGATCATCGAACATATATAGCAAGAAAAACCGATGCTCCTACAAATGATATCATCGTCCAACCATATAAAATTAGCCACAAGTCTTAAAAATAATAATGACAATAATAATTTCACTGCTAAATTTAATGAATTTTTTTTTGAGATATGTCAGAGATTGTTTTAGAAATTTATTTACACAAATGTCTAAATTTTTCTATTTTTATATTTTTAGATTTTTAGTGGTAGGATTTTATTTTAATTCTGATTTTAACCTTATTTATTACATTTACATTTATTATAGTTATCCTCACATATACAATATTCCACGCCAAATCAGAAATTGAAAACATCCCTTCCAAACCTTTCAATCTGGAAATGGACTGTTCTGGCGACTGA

mRNA sequence

ATGGCTTCAATGTCGTCTCGTGGGTCGAGTGCATGGACTGCAATGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAGTGTATGATCAAGACACGCCCGAGCGATGGCTGAATGTTGCAAAGGCTGTTGGAGAGAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAGCATATCGAATCCGGTCATGTTCCCTTCCCCTATCAAACCTCGAACGATGATGATTTTCCGACAAAAAGAGTTATCCTCACATATACAATATTCCACGCCAAATCAGAAATTGAAAACATCCCTTCCAAACCTTTCAATCTGGAAATGGACTGTTCTGGCGACTGA

Coding sequence (CDS)

ATGGCTTCAATGTCGTCTCGTGGGTCGAGTGCATGGACTGCAATGCAAAACAAGGCGTTTGAAGAGGCTTTGGCAGTGTATGATCAAGACACGCCCGAGCGATGGCTGAATGTTGCAAAGGCTGTTGGAGAGAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAGCATATCGAATCCGGTCATGTTCCCTTCCCCTATCAAACCTCGAACGATGATGATTTTCCGACAAAAAGAGTTATCCTCACATATACAATATTCCACGCCAAATCAGAAATTGAAAACATCCCTTCCAAACCTTTCAATCTGGAAATGGACTGTTCTGGCGACTGA

Protein sequence

MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKHIESGHVPFPYQTSNDDDFPTKRVILTYTIFHAKSEIENIPSKPFNLEMDCSGD

Homology

[Close]

BLAST of Moc04g05660 vs. NCBI nr
Match: XP_022136148.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESGHVPFPYQTSNDDDFPTKR
Sbjct: 61 VKHIESGHVPFPYQTSNDDDFPTKR 85

[Close]

BLAST of Moc04g05660 vs. NCBI nr
Match: XP_022952273.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG7011709.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESG+VPFPY+ S+ DD P KR
Sbjct: 61 VKHIESGNVPFPYRNSS-DDLPRKR 84

[Close]

BLAST of Moc04g05660 vs. NCBI nr
Match: KAG6572041.1 (Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESG+VPFPY+ S+ DD P KR
Sbjct: 61 VKHIESGNVPFPYRNSS-DDLPRKR 84

[Close]

BLAST of Moc04g05660 vs. NCBI nr
Match: XP_038888638.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 4.6e-31
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSS GS+AWTAMQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL++D
Sbjct: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESG+VPFPY +S+ DD P KR
Sbjct: 61 VKHIESGNVPFPYPSSS-DDLPRKR 84

[Close]

BLAST of Moc04g05660 vs. NCBI nr
Match: XP_022972527.1 (protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-31
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAK VGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESG+VPFPY+ S+ DD P KR
Sbjct: 61 VKHIESGNVPFPYRNSS-DDLPRKR 84

[Close]

BLAST of Moc04g05660 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-24
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 2  ASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDV 61
          +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGHVPFP-YQTS 77
            IE+GHVPFP Y+TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of Moc04g05660 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-22
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 3  SMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVK 62
          SMSS GS +WT  QNKAFE ALAVYDQDTP+RW NVA+AVG KT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGHVPFP-YQTS 77
           IE+GHVPFP Y+T+
Sbjct: 65 SIENGHVPFPDYKTT 79

[Close]

BLAST of Moc04g05660 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 5  SSRGSS-AWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVKH 64
          S+RGS   W+A +NKAFE ALAVYD+DTP+RW NVA+AV  +T EEVK+HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGHVPFP-YQTS 77
          IESG VPFP Y+T+
Sbjct: 63 IESGKVPFPNYRTT 76

[Close]

BLAST of Moc04g05660 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-20
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MAS S    S WT  QNK FE ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFP-YQT--SND---DDFPTKRV 87
          + +IE+G VP P Y+T  SN    +DF T+++
Sbjct: 61 LINIETGRVPLPNYKTFESNSRSINDFDTRKM 92

[Close]

BLAST of Moc04g05660 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.4e-20
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MAS S   SS+WT+ QNK FE ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFP-YQT 76
          + +IE   VP P Y+T
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]

BLAST of Moc04g05660 vs. ExPASy TrEMBL
Match: A0A6J1C6U4 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.8e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESGHVPFPYQTSNDDDFPTKR
Sbjct: 61 VKHIESGHVPFPYQTSNDDDFPTKR 85

[Close]

BLAST of Moc04g05660 vs. ExPASy TrEMBL
Match: A0A6J1GK35 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.9e-32
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESG+VPFPY+ S+ DD P KR
Sbjct: 61 VKHIESGNVPFPYRNSS-DDLPRKR 84

[Close]

BLAST of Moc04g05660 vs. ExPASy TrEMBL
Match: A0A6J1I517 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSSRGS+AWT MQNKAFE+ALAVYDQDTPERWLNVAK VGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPYQTSNDDDFPTKR 86
          VKHIESG+VPFPY+ S+ DD P KR
Sbjct: 61 VKHIESGNVPFPYRNSS-DDLPRKR 84

[Close]

BLAST of Moc04g05660 vs. ExPASy TrEMBL
Match: A0A5D3D8F6 (Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00200 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.9e-31
Identity = 71/89 (79.78%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSS GS+AWT MQNK FE+ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPY-QTSNDDDFPTKRVIL 89
          VKHIESG+VPFPY  TS+DDD P KR ++
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRGVI 89

[Close]

BLAST of Moc04g05660 vs. ExPASy TrEMBL
Match: A0A1S3BHZ4 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.4e-31
Identity = 71/89 (79.78%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MASMSS GS+AWT MQNK FE+ALA YDQDTPERW+NVAKAVGEKTEEEVKRHYQLL+ D
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGHVPFPY-QTSNDDDFPTKRVIL 89
          VKHIESG+VPFPY  TS+DDD P KR ++
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRGVV 89

[Close]

BLAST of Moc04g05660 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-25
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 2  ASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDV 61
          +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGHVPFP-YQTS 77
            IE+GHVPFP Y+TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of Moc04g05660 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-23
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 3  SMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVEDVK 62
          SMSS GS +WT  QNKAFE ALAVYDQDTP+RW NVA+AVG KT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGHVPFP-YQTS 77
           IE+GHVPFP Y+T+
Sbjct: 65 SIENGHVPFPDYKTT 79

[Close]

BLAST of Moc04g05660 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 98.6 bits (244), Expect = 3.5e-21
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MAS S    S WT  QNK FE ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFP-YQT--SND---DDFPTKRV 87
          + +IE+G VP P Y+T  SN    +DF T+++
Sbjct: 61 LINIETGRVPLPNYKTFESNSRSINDFDTRKM 92

[Close]

BLAST of Moc04g05660 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 97.8 bits (242), Expect = 6.0e-21
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MAS S    S WT  QNK FE ALAVYD+DTP+RW NVAKAVG KT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFP-YQT--SND---DDFPTKRV 87
          + +IE+G VP P Y+T  SN    +DF T+ +
Sbjct: 61 LINIETGRVPLPNYKTFESNSRSINDFDTRYI 92

[Close]

BLAST of Moc04g05660 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 97.8 bits (242), Expect = 6.0e-21
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60
          MAS S   SS+WT+ QNK FE ALAVYD+DTP+RW NVAKAVG K+ EEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGHVPFP-YQT 76
          + +IE   VP P Y+T
Sbjct: 61 LMNIEQDLVPLPKYKT 76

The following BLAST results are available for this feature:

BLAST of Moc04g05660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136148.1	1.2e-39	100.00	protein RADIALIS-like 1 [Momordica charantia]	[more]
XP_022952273.1	2.1e-31	85.88	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-li...	[more]
KAG6572041.1	2.1e-31	85.88	Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038888638.1	4.6e-31	84.71	protein RADIALIS-like 1 [Benincasa hispida]	[more]
XP_022972527.1	6.0e-31	84.71	protein RADIALIS-like 1 [Cucurbita maxima]	[more]

BLAST of Moc04g05660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.3e-24	72.37	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	1.8e-22	70.67	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	2.9e-20	66.22	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	4.9e-20	60.87	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	8.4e-20	65.79	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Moc04g05660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6U4	5.8e-40	100.00	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1	[more]
A0A6J1GK35	9.9e-32	85.88	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1	[more]
A0A6J1I517	2.9e-31	84.71	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1	[more]
A0A5D3D8F6	4.9e-31	79.78	Protein RADIALIS-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BHZ4	6.4e-31	79.78	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103489762 PE=4 SV=1	[more]

BLAST of Moc04g05660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.3e-25	72.37	RAD-like 1	[more]
AT2G21650.1	1.3e-23	70.67	Homeodomain-like superfamily protein	[more]
AT1G75250.2	3.5e-21	60.87	RAD-like 6	[more]
AT1G75250.1	6.0e-21	60.87	RAD-like 6	[more]
AT1G19510.1	6.0e-21	65.79	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 3.3E-6 score: 36.6
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 7.63747E-6 score: 38.3254
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 4.1E-22 score: 79.7
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..79
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..79
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 12..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g05660.1	Moc04g05660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity