Moc04g05560 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g05560
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr4: 3728091 .. 3728411 (-)
RNA-Seq ExpressionMoc04g05560
SyntenyMoc04g05560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAAGTGCCCATTCGTGCTTGTGGTCCTAGGCGTAGAGGACGTCGTCAAGTAGATCAGGATGCTCCAATAGAGCTTGACGATCTTGTACCTGAAGTTATTTATCATAACGTCGTGGACGTTCCACCATTTACACAGACACAGGATGATGTCGGTCTGTCCACGCCTATGGTGATGATACCAACTCCTGATTCTAGTCAGTATCGCACACCACCTTTGCCACCACAGTATGGTTATAGAGTCGGCCATGAATGTGGACTTGGGGAGCATGGGCAATACCTCAACCCTACAGAGGATCGAGATCTTGTGGAGGACTGA

mRNA sequence

ATGTATAAAGTGCCCATTCGTGCTTGTGGTCCTAGGCGTAGAGGACGTCGTCAAGTAGATCAGGATGCTCCAATAGAGCTTGACGATCTTGTACCTGAAGTTATTTATCATAACGTCGTGGACGTTCCACCATTTACACAGACACAGGATGATGTCGGTCTGTCCACGCCTATGGTGATGATACCAACTCCTGATTCTAGTCAGTATCGCACACCACCTTTGCCACCACAGTATGGTTATAGAGTCGGCCATGAATGTGGACTTGGGGAGCATGGGCAATACCTCAACCCTACAGAGGATCGAGATCTTGTGGAGGACTGA

Coding sequence (CDS)

ATGTATAAAGTGCCCATTCGTGCTTGTGGTCCTAGGCGTAGAGGACGTCGTCAAGTAGATCAGGATGCTCCAATAGAGCTTGACGATCTTGTACCTGAAGTTATTTATCATAACGTCGTGGACGTTCCACCATTTACACAGACACAGGATGATGTCGGTCTGTCCACGCCTATGGTGATGATACCAACTCCTGATTCTAGTCAGTATCGCACACCACCTTTGCCACCACAGTATGGTTATAGAGTCGGCCATGAATGTGGACTTGGGGAGCATGGGCAATACCTCAACCCTACAGAGGATCGAGATCTTGTGGAGGACTGA

Protein sequence

MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVMIPTPDSSQYRTPPLPPQYGYRVGHECGLGEHGQYLNPTEDRDLVED
Homology
[Close]
BLAST of Moc04g05560 vs. NCBI nr
Match: XP_022152034.1 (disease resistance protein RGA2-like [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 9.3e-23
Identity = 63/105 (60.00%), Postives = 71/105 (67.62%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY+VPI      RRGRRQ++QDAP E +   PE IYHNV  VPPF +TQ+DVG  TPMVM
Sbjct: 866 MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 925

Query: 61  IPTPDSSQYRTPPLPPQYGYRVGHECGLGEHGQYLNPTEDRDLVE 106
           IPTP SS   T   P QYGY  G  CG GE+GQYLNP ED+   E
Sbjct: 926 IPTPSSSHVHT---PVQYGYD-GDGCGRGEYGQYLNPIEDQQTSE 966

[Close]
BLAST of Moc04g05560 vs. NCBI nr
Match: XP_022149984.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 53/66 (80.30%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY V   A GPR RGRRQVDQDAPIELDD VPEVIYHNV D+PPFTQTQDD G STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

Query: 61  IPTPDS 67
           IPTP S
Sbjct: 390 IPTPGS 395

[Close]
BLAST of Moc04g05560 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-05
Identity = 42/114 (36.84%), Postives = 52/114 (45.61%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY +PI    P  RGR +V++    ELD+     +YHNV +VPP TQTQ   G   PM M
Sbjct: 1   MYDLPI-VPQPVHRGRVRVEE---AELDE-----VYHNVEEVPPTTQTQSQTGYGRPMTM 60

Query: 61  IPT-------------------PDSSQYRTPPLPPQYGYRVGHECGLGEHGQYL 96
           +PT                     SS Y    + P   Y  GH  G GEH +YL
Sbjct: 61  MPTFGAGYCDSEVDTGYYDVGVGSSSSYMN--VGPSASYMHGHGRGYGEHNEYL 103

[Close]
BLAST of Moc04g05560 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 44/113 (38.94%), Postives = 58/113 (51.33%), Query Frame = 0 

Query: 1   MYKVPIRACGPR-RRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMV 60
           MY +PI    PR  RGR +V++   +ELD+     +YHNV +VPP TQTQ   G  +PM+
Sbjct: 1   MYDLPI--VPPRVHRGRVRVEE---VELDE-----VYHNVEEVPPTTQTQSQTGYGSPMM 60

Query: 61  MIPTPDS----SQYRT-------PPLP------PQYGYRVGHECGLGEHGQYL 96
           M+PT  +    S+  T        PL       P   Y  GH  G GEH +YL
Sbjct: 61  MMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYL 103

[Close]
BLAST of Moc04g05560 vs. NCBI nr
Match: KAA0061327.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 41/114 (35.96%), Postives = 52/114 (45.61%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY +PI    P  RGR +V++    ELD+     +YHNV +V P TQTQ   G  +PM M
Sbjct: 1   MYDLPI-VPQPVHRGRVRVEE---AELDE-----VYHNVEEVSPTTQTQSQTGYGSPMTM 60

Query: 61  IPT-------------------PDSSQYRTPPLPPQYGYRVGHECGLGEHGQYL 96
           +PT                     SS Y    + P   Y  GH  G GEH +YL
Sbjct: 61  MPTFGAGYCDSEVDTGYYDVGVGSSSSYMN--VGPSASYMHGHGRGYGEHNEYL 103

[Close]
BLAST of Moc04g05560 vs. ExPASy TrEMBL
Match: A0A6J1DEU3 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019843 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.5e-23
Identity = 63/105 (60.00%), Postives = 71/105 (67.62%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY+VPI      RRGRRQ++QDAP E +   PE IYHNV  VPPF +TQ+DVG  TPMVM
Sbjct: 866 MYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQNDVGPCTPMVM 925

Query: 61  IPTPDSSQYRTPPLPPQYGYRVGHECGLGEHGQYLNPTEDRDLVE 106
           IPTP SS   T   P QYGY  G  CG GE+GQYLNP ED+   E
Sbjct: 926 IPTPSSSHVHT---PVQYGYD-GDGCGRGEYGQYLNPIEDQQTSE 966

[Close]
BLAST of Moc04g05560 vs. ExPASy TrEMBL
Match: A0A6J1D8N6 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111018266 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-20
Identity = 53/66 (80.30%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY V   A GPR RGRRQVDQDAPIELDD VPEVIYHNV D+PPFTQTQDD G STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

Query: 61  IPTPDS 67
           IPTP S
Sbjct: 390 IPTPGS 395

[Close]
BLAST of Moc04g05560 vs. ExPASy TrEMBL
Match: A0A5D3CZG9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001380 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 42/114 (36.84%), Postives = 52/114 (45.61%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY +PI    P  RGR +V++    ELD+     +YHNV +VPP TQTQ   G   PM M
Sbjct: 1   MYDLPI-VPQPVHRGRVRVEE---AELDE-----VYHNVEEVPPTTQTQSQTGYGRPMTM 60

Query: 61  IPT-------------------PDSSQYRTPPLPPQYGYRVGHECGLGEHGQYL 96
           +PT                     SS Y    + P   Y  GH  G GEH +YL
Sbjct: 61  MPTFGAGYCDSEVDTGYYDVGVGSSSSYMN--VGPSASYMHGHGRGYGEHNEYL 103

[Close]
BLAST of Moc04g05560 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 44/113 (38.94%), Postives = 58/113 (51.33%), Query Frame = 0 

Query: 1   MYKVPIRACGPR-RRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMV 60
           MY +PI    PR  RGR +V++   +ELD+     +YHNV +VPP TQTQ   G  +PM+
Sbjct: 1   MYDLPI--VPPRVHRGRVRVEE---VELDE-----VYHNVEEVPPTTQTQSQTGYGSPMM 60

Query: 61  MIPTPDS----SQYRT-------PPLP------PQYGYRVGHECGLGEHGQYL 96
           M+PT  +    S+  T        PL       P   Y  GH  G GEH +YL
Sbjct: 61  MMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYL 103

[Close]
BLAST of Moc04g05560 vs. ExPASy TrEMBL
Match: A0A5A7V379 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29891G00010 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 41/114 (35.96%), Postives = 52/114 (45.61%), Query Frame = 0 

Query: 1   MYKVPIRACGPRRRGRRQVDQDAPIELDDLVPEVIYHNVVDVPPFTQTQDDVGLSTPMVM 60
           MY +PI    P  RGR +V++    ELD+     +YHNV +V P TQTQ   G  +PM M
Sbjct: 1   MYDLPI-VPQPVHRGRVRVEE---AELDE-----VYHNVEEVSPTTQTQSQTGYGSPMTM 60

Query: 61  IPT-------------------PDSSQYRTPPLPPQYGYRVGHECGLGEHGQYL 96
           +PT                     SS Y    + P   Y  GH  G GEH +YL
Sbjct: 61  MPTFGAGYCDSEVDTGYYDVGVGSSSSYMN--VGPSASYMHGHGRGYGEHNEYL 103

The following BLAST results are available for this feature:
BLAST of Moc04g05560 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152034.19.3e-2360.00disease resistance protein RGA2-like [Momordica charantia][more]
XP_022149984.14.3e-2080.30serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
TYK16354.16.7e-0536.84GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0049532.11.5e-0438.94GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0061327.13.3e-0435.96GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
BLAST of Moc04g05560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g05560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DEU34.5e-2360.00disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1D8N62.1e-2080.30serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A5D3CZG93.3e-0536.84GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3CXX37.3e-0538.94GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7V3791.6e-0435.96GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
BLAST of Moc04g05560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g05560.1Moc04g05560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance