Moc04g03110 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g03110
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Protochlorophyllide reductase
Location	chr4: 1960079 .. 1960399 (+)
RNA-Seq Expression	Moc04g03110
Synteny	Moc04g03110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGTTGGCGGCGGAGCTGAGGAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGCGGCGGCGACGGCGGCGGAATTGTGGCGGAAAGAGACCGGAGAGGAGGGAATTCATATGGGTTTTCGATGATTTACAGCGTTCTTCGGACCCCATTTTCGGTTCTGTGTTGCTTCTCTCAACCGCACGTTAATGGCGCCGACGGGCTGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

mRNA sequence

ATGTGGCGGTTGGCGGCGGAGCTGAGGAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGCGGCGGCGACGGCGGCGGAATTGTGGCGGAAAGAGACCGGAGAGGAGGGAATTCATATGGGTTTTCGATGATTTACAGCGTTCTTCGGACCCCATTTTCGGTTCTGTGTTGCTTCTCTCAACCGCACGTTAATGGCGCCGACGGGCTGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGAGCTGAGGAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGCGGCGGCGACGGCGGCGGAATTGTGGCGGAAAGAGACCGGAGAGGAGGGAATTCATATGGGTTTTCGATGATTTACAGCGTTCTTCGGACCCCATTTTCGGTTCTGTGTTGCTTCTCTCAACCGCACGTTAATGGCGCCGACGGGCTGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATGTAA

Protein sequence

MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM

Homology

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BLAST of Moc04g03110 vs. NCBI nr
Match: XP_022136143.1 (uncharacterized protein LOC111007908 [Momordica charantia])

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRT 60
           MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRT
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRT 60

Query: 61  PFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           PFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM
Sbjct: 61  PFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

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BLAST of Moc04g03110 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 8.1e-43
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGG---DGGGIVA---ERDRRGGNSYGFSMI 60
           MWRLAA +RRNLHNIRKSPRVADESMYGG GG   DGGG VA   + DRR GNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YSVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           YS+LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

[Close]

BLAST of Moc04g03110 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGG--GIVAERDRRGGNSYGFSMIYSVL 60
           MWRLAA +RRNLHNIRKSPRVADESMYGGG   GG  G V + DRR GNSYGFSMIYS+L
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL 60

Query: 61  RTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           RTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108

[Close]

BLAST of Moc04g03110 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMY-GGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAA +RRNLHNIRKSPRVADESMY  GGG DGGG V + +RR GNSYGFSMIY++LR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           TPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of Moc04g03110 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-42
Identity = 91/110 (82.73%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGG----IVAERDRRGGNSYGFSMIYS 60
           MWRLAA +RRNLHNIRKSPRVADESMY GGG DGGG    +V + DRR GNSYGFSMIYS
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 60

Query: 61  VLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           +LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

[Close]

BLAST of Moc04g03110 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.5e-54
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRT 60
           MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRT
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRT 60

Query: 61  PFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           PFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM
Sbjct: 61  PFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

[Close]

BLAST of Moc04g03110 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 91/110 (82.73%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGG----IVAERDRRGGNSYGFSMIYS 60
           MWRLAA +RRNLHNIRKSPRVADESMY GGG DGGG    +V + DRR GNSYGFSMIYS
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 60

Query: 61  VLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           +LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

[Close]

BLAST of Moc04g03110 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.4e-42
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMY-GGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAA +RRNLHNIRKSPRVADESMY  GGG DGG  V + +RR GNSYGFSMIY++LR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           TPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of Moc04g03110 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGGIVAERD-RRGGNSYGFSMIYSVLR 60
           MWRLAA +R  LHNIRKSPRVADESM+ GGG DGGG V +   RR  NS+G S+IY+VLR
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGRRRERNSHGVSIIYNVLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
           TPFS L CFS PHVNG DG+WVSGEFARISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of Moc04g03110 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.5e-37
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGGG----IVAERDRRGGNSYGFSMIYS 60
           MWRLAA +RRNLHNIRKSPRVADESMY GGG DGGG    +V + DRR GNSYGFSMIYS
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVAAVVVDGDRREGNSYGFSMIYS 100

Query: 61  VLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMR 102
           +LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLM S+  R
Sbjct: 101 LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

[Close]

BLAST of Moc04g03110 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 6.2e-25
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADES-MYGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           M ++ + LRRNL N+RKSPRVAD++ +     G G G+VA   R G NS        ++R
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV-------IMR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
            PFS++ CF+ P V+G DGLWVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  FPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of Moc04g03110 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-21
Identity = 54/115 (46.96%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MWRLAAELRRNLHNIRKSPRVADESM---------YGGGGGDGGGIVAERDRRGGNSYGF 60
           M ++ + LRRNL N+RKSPRVADES          +GGG G  GGI              
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDHGGGNGSNGGI-------------- 60

Query: 61  SMIYSVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 107
                 ++ P S++ CFS P V+ ADG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  ------MKFPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of Moc04g03110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136143.1	1.3e-53	100.00	uncharacterized protein LOC111007908 [Momordica charantia]	[more]
XP_038888385.1	8.1e-43	83.04	uncharacterized protein LOC120078235 [Benincasa hispida]	[more]
XP_031744820.1	2.4e-42	83.33	uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica...	[more]
KAG6572248.1	2.4e-42	83.18	hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0059153.1	3.1e-42	82.73	uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of Moc04g03110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g03110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6U0	6.5e-54	100.00	uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5D3BTM8	1.5e-42	82.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1HZK3	4.4e-42	82.24	uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352...	[more]
A0A6J1ER34	1.4e-37	77.57	uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A1S3C134	2.5e-37	78.10	uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=...	[more]

BLAST of Moc04g03110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	6.2e-25	55.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G04795.1	1.4e-21	46.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g03110.1	Moc04g03110.1	mRNA