Moc04g02210 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g02210
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Protein lsd90 like
Location	chr4: 1381196 .. 1381671 (+)
RNA-Seq Expression	Moc04g02210
Synteny	Moc04g02210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCTTCTCCCGGTTCGGTTCTTGTTGCCGGTCCCCGGCGACAGTGGCGCCGCGGCTCTACCAGGACACGGCTCCGGCGGACGAGCCCATCACGCGTGCCCGTGTGGAGGAGCAGCGCGTTGGGAGAATGCGGTGTTCGAAGTCGGGACCGGCGGCGCATTGGCGGCCTGCGCTTTCGGCGATTTTGGAGGATAATAATGCCGCTGACGCCGAGCAGTTTCAGGTGAATAAATCCGGCGAAAGGAAGCTGGAGAAGAAAGCGTCCGGCCGGCGGGCCAGGGCCATCGCCAAGTCACAAAGTTATCACGGCAGAGATGATTACTGGTAATCAAGCTGAACTCTCTGACGAATTAGGAAAAATTCAAAAAATAAGAAAACAAATTTAGAGCTTAATTTGTTTATTTAATCTGCAGGACGAACTCAACGCCGGTGGCGATGCCGACGATTTCGCCGGCGCCGTTTATGTCTTGA

mRNA sequence

ATGAAATTCTTCTCCCGGTTCGGTTCTTGTTGCCGGTCCCCGGCGACAGTGGCGCCGCGGCTCTACCAGGACACGGCTCCGGCGGACGAGCCCATCACGCGTGCCCGTGTGGAGGAGCAGCGCGTTGGGAGAATGCGGTGTTCGAAGTCGGGACCGGCGGCGCATTGGCGGCCTGCGCTTTCGGCGATTTTGGAGGATAATAATGCCGCTGACGCCGAGCAGTTTCAGGTGAATAAATCCGGCGAAAGGAAGCTGGAGAAGAAAGCGTCCGGCCGGCGGGCCAGGGCCATCGCCAAGTCACAAAGTTATCACGGCAGAGATGATTACTGGACGAACTCAACGCCGGTGGCGATGCCGACGATTTCGCCGGCGCCGTTTATGTCTTGA

Coding sequence (CDS)

ATGAAATTCTTCTCCCGGTTCGGTTCTTGTTGCCGGTCCCCGGCGACAGTGGCGCCGCGGCTCTACCAGGACACGGCTCCGGCGGACGAGCCCATCACGCGTGCCCGTGTGGAGGAGCAGCGCGTTGGGAGAATGCGGTGTTCGAAGTCGGGACCGGCGGCGCATTGGCGGCCTGCGCTTTCGGCGATTTTGGAGGATAATAATGCCGCTGACGCCGAGCAGTTTCAGGTGAATAAATCCGGCGAAAGGAAGCTGGAGAAGAAAGCGTCCGGCCGGCGGGCCAGGGCCATCGCCAAGTCACAAAGTTATCACGGCAGAGATGATTACTGGACGAACTCAACGCCGGTGGCGATGCCGACGATTTCGCCGGCGCCGTTTATGTCTTGA

Protein sequence

MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPALSAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPTISPAPFMS

Homology

[Close]

BLAST of Moc04g02210 vs. NCBI nr
Match: XP_022136180.1 (uncharacterized protein LOC111007936 [Momordica charantia])

HSP 1 Score: 258.8 bits (660), Expect = 2.4e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL
Sbjct: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120
           SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT
Sbjct: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120

Query: 121 ISPAPFMS 129
           ISPAPFMS
Sbjct: 121 ISPAPFMS 128

[Close]

BLAST of Moc04g02210 vs. NCBI nr
Match: XP_038888636.1 (uncharacterized protein LOC120078432 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 9.2e-25
Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS A VAPR+Y D A A+E      V+EQ V R+R SKS  AAHWRPAL
Sbjct: 1   MSFFSKFSSCWRS-AVVAPRVYLDGAVAEE------VKEQSVTRLRSSKSESAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120
           + ILED+     ++  V KSG++K EKK SGR+ R + KS S HGRD+YWTNS  +AMP 
Sbjct: 61  ADILEDSK---GDRSPVKKSGKKKPEKKMSGRQDRLLTKSYSCHGRDNYWTNSVAMAMPV 117

Query: 121 ISPAPFM 128
            SP P M
Sbjct: 121 FSPVPVM 117

[Close]

BLAST of Moc04g02210 vs. NCBI nr
Match: XP_008455392.1 (PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 8.9e-20
Identity = 67/128 (52.34%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS A VAPR+Y   A ++E        EQ V R R SKS  AAHW+PAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWQPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYWTNSTPVAMP 120
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW NS  +AMP
Sbjct: 61  DAIVEDGKGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYWRNSMAMAMP 119

Query: 121 TISPAPFM 128
             SP P M
Sbjct: 121 AFSPVPSM 119

[Close]

BLAST of Moc04g02210 vs. NCBI nr
Match: XP_031745001.1 (uncharacterized protein LOC116405215 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 60/126 (47.62%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 3   FFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPALSA 62
           F S+FGSC RS A VAP          + +T     EQ V   R SKS  AAHWRPAL+A
Sbjct: 4   FISKFGSCWRS-AAVAPH---------DAVTDEVKAEQGVTSPRSSKSESAAHWRPALAA 63

Query: 63  ILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYWTNSTPVAMPTI 122
           I+ED+N A   +++  KS +RK EKK SG +     KS  Y+ GRD+YWTN+  +AMP  
Sbjct: 64  IVEDSNGA---EWRCKKSSKRKAEKKTSGHQGSFTTKSYGYYDGRDNYWTNTMAMAMPAF 116

Query: 123 SPAPFM 128
           SP P M
Sbjct: 124 SPVPSM 116

[Close]

BLAST of Moc04g02210 vs. NCBI nr
Match: KAA0031624.1 (uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa] >TYK07076.1 uncharacterized protein E5676_scaffold13G003940 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-15
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS A VAPR+Y   A ++E        EQ V R R SKS  AAHWRPAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW
Sbjct: 61  DAIVEDGRGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

[Close]

BLAST of Moc04g02210 vs. ExPASy TrEMBL
Match: A0A6J1C360 (uncharacterized protein LOC111007936 OS=Momordica charantia OX=3673 GN=LOC111007936 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL
Sbjct: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120
           SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT
Sbjct: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120

Query: 121 ISPAPFMS 129
           ISPAPFMS
Sbjct: 121 ISPAPFMS 128

[Close]

BLAST of Moc04g02210 vs. ExPASy TrEMBL
Match: A0A1S3C217 (uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.3e-20
Identity = 67/128 (52.34%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS A VAPR+Y   A ++E        EQ V R R SKS  AAHW+PAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWQPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYWTNSTPVAMP 120
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW NS  +AMP
Sbjct: 61  DAIVEDGKGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYWRNSMAMAMP 119

Query: 121 TISPAPFM 128
             SP P M
Sbjct: 121 AFSPVPSM 119

[Close]

BLAST of Moc04g02210 vs. ExPASy TrEMBL
Match: A0A5D3C9U7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003940 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 59/111 (53.15%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS A VAPR+Y   A ++E        EQ V R R SKS  AAHWRPAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW
Sbjct: 61  DAIVEDGRGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

[Close]

BLAST of Moc04g02210 vs. ExPASy TrEMBL
Match: A0A0A0K279 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 3   FFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPALSA 62
           F S+FGSC RS A VAP          + +T     EQ V   R SKS  AAHWRPAL+A
Sbjct: 4   FISKFGSCWRS-AAVAPH---------DAVTDEVKAEQGVTSPRSSKSESAAHWRPALAA 63

Query: 63  ILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
           I+ED+N A   +++  KS +RK EKK SG +     KS  Y+ GRD+YW
Sbjct: 64  IVEDSNGA---EWRCKKSSKRKAEKKTSGHQGSFTTKSYGYYDGRDNYW 99

[Close]

BLAST of Moc04g02210 vs. ExPASy TrEMBL
Match: A0A6J1GKL7 (uncharacterized protein LOC111455175 OS=Cucurbita moschata OX=3662 GN=LOC111455175 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 55/127 (43.31%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M  FS+ GS  R  A  A R+YQ               EQ + R+  SKS  A+HWRPAL
Sbjct: 1   MPLFSKLGSRLRR-AVDARRVYQ---------------EQSLERVTSSKSESASHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYWTNSTPVAMPT 120
             ILED+  A   +  V KSGE+   KK S R+ R++ KS   +GRD YW +ST VA P 
Sbjct: 61  PPILEDSKGA---RLPVKKSGEK---KKTSSRQVRSVTKS---YGRDGYWRSSTMVATPF 102

Query: 121 ISPAPFM 128
            +P PFM
Sbjct: 121 FAPTPFM 102

The following BLAST results are available for this feature:

BLAST of Moc04g02210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136180.1	2.4e-65	100.00	uncharacterized protein LOC111007936 [Momordica charantia]	[more]
XP_038888636.1	9.2e-25	55.91	uncharacterized protein LOC120078432 [Benincasa hispida]	[more]
XP_008455392.1	8.9e-20	52.34	PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo]	[more]
XP_031745001.1	2.1e-16	47.62	uncharacterized protein LOC116405215 [Cucumis sativus]	[more]
KAA0031624.1	3.9e-15	53.15	uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Moc04g02210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g02210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C360	1.2e-65	100.00	uncharacterized protein LOC111007936 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A1S3C217	4.3e-20	52.34	uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=...	[more]
A0A5D3C9U7	1.9e-15	53.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K279	2.8e-11	46.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1	[more]
A0A6J1GKL7	2.8e-11	43.31	uncharacterized protein LOC111455175 OS=Cucurbita moschata OX=3662 GN=LOC1114551...	[more]

BLAST of Moc04g02210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	PANTHER	PTHR35318	BNAA10G08410D PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g02210.1	Moc04g02210.1	mRNA