Moc03g32960 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g32960
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionATP synthase subunit beta, chloroplastic-like
Locationchr3: 23444850 .. 23446526 (-)
RNA-Seq ExpressionMoc03g32960
SyntenyMoc03g32960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCAAGTGTAGAACTTTGCTCATTTCTTGGTCGTCGACCCCTCAGTCACTCACTACGAACGCCCCCGATCAGTGCAATGAGATGTGTCTATTTATCGAGATCTTGACTCGAAATGGGAGCAGGTTTGAAAAAGGATCTTAGAGTGTGACGGGTTGGGCCAGGAGGGTTTCTTAACGCCTTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACATTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCAGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCGATTGATTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCACGGGCGAGGTCCCTGGTTCAAGTCCAGGATGGCCCAGCTACGCCAAGAAAAAGAATAAGGGTTGGCTACATTGCCTATTTATAGTCGTTCGGAAGTTTCCAGAACTTCCTAAATGAGCCCTAGTTCGTTGCTGCAGGGCCCAAGGTACGTGGAGATCAGAAGAGGATGATTACCGGGCTTGGCAATGGGCCGAGCCCGATAATCATCCTCTTTTGATCTCCACGGGCCGAGCCCAGCTCAACGCTGAGCACAGGACGGCTCGATTCAATCCAGTTCTATCGATGACTTCGTTGGTCCTCTTCTATTCTGATGGTCTGTGTTTTGTCGTTTTTCCTTTGTATAACAACAACCATAAAATGACTTGTTATCACAATGATATTAAAATTATATAAATTACAAAATAAAACGTGACAATTTATATATAGCGTAATTGCCTACAATTCCAAATTTATAGAATTAAGAGATTATACAGAGAAAAAGTTTTAGAATATAGAATTTGCTCCACCCTTCTCTATATATATATCTTGGAAACCCTTCATTATTCATTTTGTTCATTATATACCACTTGTCACGCATATAGTAATAATGTTTTATTTATCTTTGCTCCTCAAAGTTGGTGTCTTTTGCATGAAACATGAGAAGCTCAGTATAAAATATGTTTTTTTTCCCTCTCACGAAACATAATCACAATTATTATAATCTAGGTGCTGGTTAATCAACCCCATTTTGCTAACTGTTTATTTAGTTTAGCGACGAAAAAGATTGTGGAGTTGTAAAAAAGTAGGTTGAAAAGAGAAGGGTGGCCTTGGCGCGCCAATGCCCGTTATCCCAGATTGGTTATAACATAATTCTCTAAATTGGAAGAGGGAGATTATTTTGCTGCAACAAAAGCGGCCTCTTATAAATTTTCACAACCCGCAATCTTTTCCCTAACCTCTCTGCAGCAAAAAAATCAGAAAGACCCTCCTTGGGTTGGGTCTTCTTCTTTTCTTTGCTTTCTTCTTGTTCCTCCGCAGGTTTCAGAATTTGGTAACTTTTTTTCCCTTACTGTTTTTGCCTTCGTTTATGTATAATTTGAATTGGGTTCACCTCATCTTTGCAAGTGAACGTTTTCTAGGCAAGTTTGTTGGGGTGTTCTATGTTATGATCATTAGCATTGGCATGATATCAATTTACAGATGGGTTCATCTCTGTTCACCTTATCCTGCTCTTATTTTGCCTGAATATCCCTCTTGGGTTAAGAGGGAATGGCAAAATGCCATTAATTTCATTGGATGTTCTAGAGTTATGCCTTTGTAA

mRNA sequence

ATGGAATTCAAGTGTAGAACTTTGCTCATTTCTTGGTCGTCGACCCCTCAGTCACTCACTACGAACGCCCCCGATCAGTGCAATGAGATGTGTCTATTTATCGAGATCTTGACTCGAAATGGGAGCAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACATTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCAGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCGATTGATTCTCTCCCAATTGGTTGGACCGGCCCAAGGTACGTGGAGATCAGAAGAGGATGATTACCGGGCTTGGCAATGGGCCGAGCCCGATAATCATCCTCTTTTGATCTCCACGGGCCGAGCCCAGCTCAACGCTGAGCACAGGACGGCTCGATTCAATCCAGTTCTATCGATGACTTCGTTGGTCCTCTTCTATTCTGATGGCAAGTTTGTTGGGGTGTTCTATGTTATGATCATTAGCATTGGCATGATATCAATTTACAGATGGGTTCATCTCTGTTCACCTTATCCTGCTCTTATTTTGCCTGAATATCCCTCTTGGGTTAAGAGGGAATGGCAAAATGCCATTAATTTCATTGGATGTTCTAGAGTTATGCCTTTGTAA

Coding sequence (CDS)

ATGGAATTCAAGTGTAGAACTTTGCTCATTTCTTGGTCGTCGACCCCTCAGTCACTCACTACGAACGCCCCCGATCAGTGCAATGAGATGTGTCTATTTATCGAGATCTTGACTCGAAATGGGAGCAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAAGCACATTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCAGCGTTCGGGAAGGATGAATCGCTCCCGAAAAGGAATCGATTGATTCTCTCCCAATTGGTTGGACCGGCCCAAGGTACGTGGAGATCAGAAGAGGATGATTACCGGGCTTGGCAATGGGCCGAGCCCGATAATCATCCTCTTTTGATCTCCACGGGCCGAGCCCAGCTCAACGCTGAGCACAGGACGGCTCGATTCAATCCAGTTCTATCGATGACTTCGTTGGTCCTCTTCTATTCTGATGGCAAGTTTGTTGGGGTGTTCTATGTTATGATCATTAGCATTGGCATGATATCAATTTACAGATGGGTTCATCTCTGTTCACCTTATCCTGCTCTTATTTTGCCTGAATATCCCTCTTGGGTTAAGAGGGAATGGCAAAATGCCATTAATTTCATTGGATGTTCTAGAGTTATGCCTTTGTAA

Protein sequence

MEFKCRTLLISWSSTPQSLTTNAPDQCNEMCLFIEILTRNGSSYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGPAQGTWRSEEDDYRAWQWAEPDNHPLLISTGRAQLNAEHRTARFNPVLSMTSLVLFYSDGKFVGVFYVMIISIGMISIYRWVHLCSPYPALILPEYPSWVKREWQNAINFIGCSRVMPL
Homology
[Close]
BLAST of Moc03g32960 vs. NCBI nr
Match: GEU96661.1 (ATP synthase subunit beta, chloroplastic [Tanacetum cinerariifolium])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-20
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 29  EMCLFIEILTRNGSSYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILS 88
           ++ +++ + ++   SYFTKTCHGKEEGGN+H WRAQYNGELYAAFGKDESLPKRN LILS
Sbjct: 884 DVSIYLSLDSKWEQSYFTKTCHGKEEGGNRHTWRAQYNGELYAAFGKDESLPKRNLLILS 943

Query: 89  QLVGP 94
           QLVGP
Sbjct: 944 QLVGP 948

[Close]
BLAST of Moc03g32960 vs. NCBI nr
Match: PPR83386.1 (hypothetical protein GOBAR_AA37328 [Gossypium barbadense])

HSP 1 Score: 108.2 bits (269), Expect = 8.6e-20
Identity = 51/60 (85.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 43  SYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGPAQGTWRSEE 102
           SYFT TCHGKEEGGNKH WRAQYNGELYAAFGKDESLPKRN LILSQL GPA    R EE
Sbjct: 294 SYFTNTCHGKEEGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLDGPAAPRKRIEE 353

[Close]
BLAST of Moc03g32960 vs. NCBI nr
Match: PPS07120.1 (hypothetical protein GOBAR_AA13525 [Gossypium barbadense])

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-19
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 43  SYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGP 94
           SYFT TCHGKEEGGNKH WRAQYNGELYAAFGKDESLPKRN LILSQLVGP
Sbjct: 374 SYFTNTCHGKEEGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLVGP 424

[Close]
BLAST of Moc03g32960 vs. NCBI nr
Match: KAG8363423.1 (hypothetical protein BUALT_Bualt19G0021100 [Buddleja alternifolia])

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-19
Identity = 52/68 (76.47%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 39  RNGSSYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGPAQGTW 98
           +  + YFTKTC GKEEGGNKH WRAQYNGELYAAFGKDESLPKRN LILSQL GPA    
Sbjct: 98  KKNACYFTKTCQGKEEGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLDGPAAPGK 157

Query: 99  RSEE-DDY 106
           R EE  DY
Sbjct: 158 RIEEASDY 165

[Close]
BLAST of Moc03g32960 vs. NCBI nr
Match: KAG8367908.1 (hypothetical protein BUALT_Bualt16G0121700 [Buddleja alternifolia])

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-18
Identity = 51/68 (75.00%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 39  RNGSSYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGPAQGTW 98
           +  + YFTKTC GKEEG NKH WRAQYNGELYAAFGKDESLPKRN LILSQL GPA    
Sbjct: 113 KKNACYFTKTCQGKEEGENKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLDGPAAPGK 172

Query: 99  RSEE-DDY 106
           R EE  DY
Sbjct: 173 RIEEASDY 180

[Close]
BLAST of Moc03g32960 vs. ExPASy TrEMBL
Match: A0A6N2N9U7 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS486410 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 24  PDQCNEMCLFIEILTRNGSSYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRN 83
           PDQCN MCLFI +LTRNGSSYF KTCHGKEEGGNKH WRAQY GELYAAFGKDESLPKRN
Sbjct: 349 PDQCNGMCLFIYLLTRNGSSYFKKTCHGKEEGGNKHTWRAQYTGELYAAFGKDESLPKRN 408

Query: 84  RLILSQLVGPA 95
            LILSQLVGP+
Sbjct: 409 LLILSQLVGPS 419

[Close]
BLAST of Moc03g32960 vs. ExPASy TrEMBL
Match: A0A2P5VX21 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37328 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-20
Identity = 51/60 (85.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 43  SYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGPAQGTWRSEE 102
           SYFT TCHGKEEGGNKH WRAQYNGELYAAFGKDESLPKRN LILSQL GPA    R EE
Sbjct: 294 SYFTNTCHGKEEGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLDGPAAPRKRIEE 353

[Close]
BLAST of Moc03g32960 vs. ExPASy TrEMBL
Match: A0A2P5XUU9 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.3e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 43  SYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGP 94
           SYFT TCHGKEEGGNKH WRAQYNGELYAAFGKDESLPKRN LILSQLVGP
Sbjct: 374 SYFTNTCHGKEEGGNKHTWRAQYNGELYAAFGKDESLPKRNLLILSQLVGP 424

[Close]
BLAST of Moc03g32960 vs. ExPASy TrEMBL
Match: A0A6N2L1K4 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS104494 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0 

Query: 24  PDQCNEMCLFIEILTRNGSSYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRN 83
           PDQCN MCLFI +LTRNGS             GNKH WRAQY GELYAAFGKDESLPKRN
Sbjct: 262 PDQCNGMCLFIYLLTRNGS-----------RRGNKHTWRAQYTGELYAAFGKDESLPKRN 321

Query: 84  RLILSQLVGPA 95
            LILSQLVGP+
Sbjct: 322 LLILSQLVGPS 321

[Close]
BLAST of Moc03g32960 vs. ExPASy TrEMBL
Match: A0A2P5XJ56 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17289 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18
Identity = 46/51 (90.20%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 43  SYFTKTCHGKEEGGNKHIWRAQYNGELYAAFGKDESLPKRNRLILSQLVGP 94
           SYFT TCHGKEEGGNKH WR QYNGELYAAFGKDESLPK N LILSQLVGP
Sbjct: 797 SYFTNTCHGKEEGGNKHTWRVQYNGELYAAFGKDESLPKWNLLILSQLVGP 847

The following BLAST results are available for this feature:
BLAST of Moc03g32960 vs. NCBI nr
Match NameE-valueIdentityDescription
GEU96661.12.3e-2073.85ATP synthase subunit beta, chloroplastic [Tanacetum cinerariifolium][more]
PPR83386.18.6e-2085.00hypothetical protein GOBAR_AA37328 [Gossypium barbadense][more]
PPS07120.11.9e-1994.12hypothetical protein GOBAR_AA13525 [Gossypium barbadense][more]
KAG8363423.13.3e-1976.47hypothetical protein BUALT_Bualt19G0021100 [Buddleja alternifolia][more]
KAG8367908.12.8e-1875.00hypothetical protein BUALT_Bualt16G0121700 [Buddleja alternifolia][more]
BLAST of Moc03g32960 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc03g32960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6N2N9U71.3e-2988.73Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS486410 PE... [more]
A0A2P5VX214.2e-2085.00Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA37328 P... [more]
A0A2P5XUU99.3e-2094.12Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 P... [more]
A0A6N2L1K41.0e-1871.83Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS104494 PE... [more]
A0A2P5XJ562.3e-1890.20Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17289 P... [more]
BLAST of Moc03g32960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g32960.1Moc03g32960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043229 intracellular organelle
cellular_component GO:0009521 photosystem
molecular_function GO:0005524 ATP binding
molecular_function GO:0016168 chlorophyll binding