Moc03g32510 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g32510
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr3: 23119912 .. 23120397 (-)
RNA-Seq Expression	Moc03g32510
Synteny	Moc03g32510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTACAAGAAGGCTTGTCATCTTTTTGCTTGCTTTCTTCTCCCTACACTTGAACGATCAAGGTAATTTAATTCTAAAGCTGATGATTTTATTTTAATAACATGTGTTTTTTAAGTTAAGTTTCGTTATGTGGGCAGGTGGGATTATTGCATATGGAAGAAATTATCCCTTTCCAATGTCTCGGGTTGGAAGTGAAAAACAAAGAGAATCAGTGAGAAAGATGATGGGTAAAGAAGATTTGAGAAGGGTAAAAGAGGAAGGTCACCATTTTTCTGGGAGCACATCTATTTCCAATGGTAATTTGAATCCAAGGAAGAATGCAGAGAATTGGAGTGCAAAACCAAAGCTCATTAGCAAAAGAGATTACAACCTGAACCAGCATCCATTGGACGTTGAAGCTTCTAGTTTTGTGACTTTTAATGCGGACTATTTTGTCGCCAAACCACATCCTCCAAAGAACAATGGAGGGAAGTGTCTCTAA

mRNA sequence

ATGGCATCTACAAGAAGGCTTGTCATCTTTTTGCTTGCTTTCTTCTCCCTACACTTGAACGATCAAGGTGGGATTATTGCATATGGAAGAAATTATCCCTTTCCAATGTCTCGGGTTGGAAGTGAAAAACAAAGAGAATCAGTGAGAAAGATGATGGGTAAAGAAGATTTGAGAAGGGTAAAAGAGGAAGGTCACCATTTTTCTGGGAGCACATCTATTTCCAATGGTAATTTGAATCCAAGGAAGAATGCAGAGAATTGGAGTGCAAAACCAAAGCTCATTAGCAAAAGAGATTACAACCTGAACCAGCATCCATTGGACGTTGAAGCTTCTAGTTTTGTGACTTTTAATGCGGACTATTTTGTCGCCAAACCACATCCTCCAAAGAACAATGGAGGGAAGTGTCTCTAA

Coding sequence (CDS)

ATGGCATCTACAAGAAGGCTTGTCATCTTTTTGCTTGCTTTCTTCTCCCTACACTTGAACGATCAAGGTGGGATTATTGCATATGGAAGAAATTATCCCTTTCCAATGTCTCGGGTTGGAAGTGAAAAACAAAGAGAATCAGTGAGAAAGATGATGGGTAAAGAAGATTTGAGAAGGGTAAAAGAGGAAGGTCACCATTTTTCTGGGAGCACATCTATTTCCAATGGTAATTTGAATCCAAGGAAGAATGCAGAGAATTGGAGTGCAAAACCAAAGCTCATTAGCAAAAGAGATTACAACCTGAACCAGCATCCATTGGACGTTGAAGCTTCTAGTTTTGTGACTTTTAATGCGGACTATTTTGTCGCCAAACCACATCCTCCAAAGAACAATGGAGGGAAGTGTCTCTAA

Protein sequence

MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRVKEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADYFVAKPHPPKNNGGKCL

Homology

[Close]

BLAST of Moc03g32510 vs. NCBI nr
Match: XP_022137288.1 (uncharacterized protein LOC111008786 [Momordica charantia])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60
           MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV
Sbjct: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60

Query: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120
           KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY
Sbjct: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120

Query: 121 FVAKPHPPKNNGGKCL 137
           FVAKPHPPKNNGGKCL
Sbjct: 121 FVAKPHPPKNNGGKCL 136

[Close]

BLAST of Moc03g32510 vs. NCBI nr
Match: XP_031736121.1 (uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical protein Csa_014013 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60
           MAS R  + FL AF  L      G +A GR+YP     +G E Q + ++KM   E +R  
Sbjct: 1   MASPRLRLFFLFAFVLLR-----GGVADGRSYPVSTQVLGKETQEDVMKKM---ERIRVK 60

Query: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120
           +++G   S ST+ S+ NL   K     + K K I+KRD +   H L+ E S F+ +NADY
Sbjct: 61  EQDGCRSSPSTTDSSDNLYQNKK-RILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADY 120

Query: 121 FVAKPHPPKNNGG 134
           FVAKPHPPKNNGG
Sbjct: 121 FVAKPHPPKNNGG 124

[Close]

BLAST of Moc03g32510 vs. NCBI nr
Match: TYJ98963.1 (hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-09
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60
           MAS  RL+IFL  F  L      G +A GR+YP        ++  + + K M  E +R  
Sbjct: 3   MASV-RLLIFLFTFVFLR-----GGVADGRSYPVSTPVAECKEMEKDIMKKM--ERIRVK 62

Query: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120
           + +G   S ST  S+ NL  +K  ++ + K K ++K   +   H  + + S F+ FNADY
Sbjct: 63  EVDGCRSSPSTIDSSDNLY-KKKKKSLNVKYKWVNK---SHGGHLPNDKGSRFIAFNADY 122

Query: 121 FVAKPHPPKNNGGKCL 137
           FVAKPHPPKNNGGK L
Sbjct: 123 FVAKPHPPKNNGGKYL 126

[Close]

BLAST of Moc03g32510 vs. NCBI nr
Match: XP_040366475.1 (uncharacterized protein LOC121050479 [Rosa chinensis])

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-04
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 49  RKMMGKEDLRRVKEEGHHFSG-----STSISNGNLNPRKNAENWSAKPKLIS--KRDYNL 108
           RKMM K  L  VKEE  + +G     S + S+G+ +P KN+ N + +P+ +    R +  
Sbjct: 72  RKMMFKRILGMVKEEAGYLNGGQSSKSIATSSGSAHPVKNSININVRPQRLRNISRGHPH 131

Query: 109 NQHPLDVE-ASSFVTFNADYFVAKPHPPKNN 132
            +  + V+ A +F+  NADY V +PHPPKNN
Sbjct: 132 TRRRVKVKIAGNFIPLNADYHVPRPHPPKNN 162

[Close]

BLAST of Moc03g32510 vs. ExPASy TrEMBL
Match: A0A6J1C9X6 (uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008786 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.2e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60
           MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV
Sbjct: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60

Query: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120
           KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY
Sbjct: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120

Query: 121 FVAKPHPPKNNGGKCL 137
           FVAKPHPPKNNGGKCL
Sbjct: 121 FVAKPHPPKNNGGKCL 136

[Close]

BLAST of Moc03g32510 vs. ExPASy TrEMBL
Match: A0A0A0LVN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60
           MAS R  + FL AF  L      G +A GR+YP     +G E Q + ++KM   E +R  
Sbjct: 1   MASPRLRLFFLFAFVLLR-----GGVADGRSYPVSTQVLGKETQEDVMKKM---ERIRVK 60

Query: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120
           +++G   S ST+ S+ NL   K     + K K I+KRD +   H L+ E S F+ +NADY
Sbjct: 61  EQDGCRSSPSTTDSSDNLYQNKK-RILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADY 120

Query: 121 FVAKPHPPKNNGG 134
           FVAKPHPPKNNGG
Sbjct: 121 FVAKPHPPKNNGG 124

[Close]

BLAST of Moc03g32510 vs. ExPASy TrEMBL
Match: A0A5D3BI53 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001660 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-09
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60
           MAS  RL+IFL  F  L      G +A GR+YP        ++  + + K M  E +R  
Sbjct: 3   MASV-RLLIFLFTFVFLR-----GGVADGRSYPVSTPVAECKEMEKDIMKKM--ERIRVK 62

Query: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120
           + +G   S ST  S+ NL  +K  ++ + K K ++K   +   H  + + S F+ FNADY
Sbjct: 63  EVDGCRSSPSTIDSSDNLY-KKKKKSLNVKYKWVNK---SHGGHLPNDKGSRFIAFNADY 122

Query: 121 FVAKPHPPKNNGGKCL 137
           FVAKPHPPKNNGGK L
Sbjct: 123 FVAKPHPPKNNGGKYL 126

The following BLAST results are available for this feature:

BLAST of Moc03g32510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137288.1	1.1e-71	100.00	uncharacterized protein LOC111008786 [Momordica charantia]	[more]
XP_031736121.1	3.5e-14	43.61	uncharacterized protein LOC116401758 [Cucumis sativus] >KGN64086.1 hypothetical ...	[more]
TYJ98963.1	5.8e-09	39.71	hypothetical protein E5676_scaffold248G001660 [Cucumis melo var. makuwa]	[more]
XP_040366475.1	5.6e-04	38.46	uncharacterized protein LOC121050479 [Rosa chinensis]	[more]

BLAST of Moc03g32510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g32510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C9X6	5.2e-72	100.00	uncharacterized protein LOC111008786 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A0A0LVN9	1.7e-14	43.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1	[more]
A0A5D3BI53	2.8e-09	39.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Moc03g32510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..84
None	No IPR available	PANTHER	PTHR36313:SF2	SUBFAMILY NOT NAMED	coord: 43..131
IPR038804	Root meristem growth factor 1/2/3	PANTHER	PTHR36313	ROOT MERISTEM GROWTH FACTOR 2	coord: 43..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g32510.1	Moc03g32510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010082	regulation of root meristem growth
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity