Moc03g30670 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g30670
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RING-H2 finger protein ATL56-like
Location	chr3: 21846431 .. 21846844 (+)
RNA-Seq Expression	Moc03g30670
Synteny	Moc03g30670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGAGATTGCGGTGTCGGCTGTTCTGTTGGTGGTGGGAATAGCTGTTTTGATAGTGATTCATATGTGTATAGTGGGGAGGCTTTTCAGTGGAGAAGGGAATTTTGTGAAGAGAATGTGTAATGAGGATTTGGAGAAGCTTCCTTGTTATGAGTATAAAGAGAGGAGTGGAGTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATGGGGGAAATATGCAGATTGTTGCCAAATTGCAGCCATAGTTTCCATGTCCACTGCATCGATTCATGGCTCATCAAGACACCCATTTGCCCAATTTGTAGGACTTGTGCGGCTGTTCCCAAAATTGGGCTCCAGGAAAACCGTGGGGTTCCACAACTTGAGATGAATCGAATACCGATGAATCGGGTACCGTTCAGTGGTTAA

mRNA sequence

ATGGTTATGGAGATTGCGGTGTCGGCTGTTCTGTTGGTGGTGGGAATAGCTGTTTTGATAGTGATTCATATGTGTATAGTGGGGAGGCTTTTCAGTGGAGAAGGGAATTTTGTGAAGAGAATGTGTAATGAGGATTTGGAGAAGCTTCCTTGTTATGAGTATAAAGAGAGGAGTGGAGTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATGGGGGAAATATGCAGATTGTTGCCAAATTGCAGCCATAGTTTCCATGTCCACTGCATCGATTCATGGCTCATCAAGACACCCATTTGCCCAATTTGTAGGACTTGTGCGGCTGTTCCCAAAATTGGGCTCCAGGAAAACCGTGGGGTTCCACAACTTGAGATGAATCGAATACCGATGAATCGGGTACCGTTCAGTGGTTAA

Coding sequence (CDS)

ATGGTTATGGAGATTGCGGTGTCGGCTGTTCTGTTGGTGGTGGGAATAGCTGTTTTGATAGTGATTCATATGTGTATAGTGGGGAGGCTTTTCAGTGGAGAAGGGAATTTTGTGAAGAGAATGTGTAATGAGGATTTGGAGAAGCTTCCTTGTTATGAGTATAAAGAGAGGAGTGGAGTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATGGGGGAAATATGCAGATTGTTGCCAAATTGCAGCCATAGTTTCCATGTCCACTGCATCGATTCATGGCTCATCAAGACACCCATTTGCCCAATTTGTAGGACTTGTGCGGCTGTTCCCAAAATTGGGCTCCAGGAAAACCGTGGGGTTCCACAACTTGAGATGAATCGAATACCGATGAATCGGGTACCGTTCAGTGGTTAA

Protein sequence

MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGEGNFVKRMCNEDLEKLPCYEYKERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICRTCAAVPKIGLQENRGVPQLEMNRIPMNRVPFSG

Homology

[Close]

BLAST of Moc03g30670 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-39
Identity = 91/127 (71.65%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGE------GNFVKRMCNEDLEKLPCYEY 60
           MVMEI VSAVLL+VGIAVL+VIH+CIVGR F GE       N  K + N+DLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  K-----ERSGV--ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICRTCA 115
           K       +GV  ECVVCLE FK GE CRLLPNC HSFHV CIDSWL+KTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of Moc03g30670 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 4.1e-39
Identity = 90/127 (70.87%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGE------GNFVKRMCNEDLEKLPCYEY 60
           MVMEI VSAVLL+VGIAVL+VIH+CIVGR F GE       N  K + N+DLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  K-----ERSGV--ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICRTCA 115
           K       +GV  ECVVCLE FK GE CRLLPNC HSFHV CIDSWL+KTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of Moc03g30670 vs. NCBI nr
Match: XP_034673610.1 (RING-H2 finger protein ATL56-like [Vitis riparia])

HSP 1 Score: 150.6 bits (379), Expect = 9.9e-33
Identity = 80/136 (58.82%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFS---GEGNFVKR-------MCNEDLEKLP 60
           MVMEI VS VLL VGIAVLIVIH+CIVGR F    G G  V+R       M  ++L+KLP
Sbjct: 1   MVMEIVVSLVLLFVGIAVLIVIHVCIVGRAFRRAYGNGAMVQRGGSGGLGMSQDELKKLP 60

Query: 61  CYEYK-------ERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPIC 120
           C+EYK         S V+C VCLE+F+ G+ CRLLPNC H FH  CIDSWL+KTPICPIC
Sbjct: 61  CFEYKAVALEKASNSPVDCAVCLENFRKGDKCRLLPNCKHFFHSQCIDSWLLKTPICPIC 120

[Close]

BLAST of Moc03g30670 vs. NCBI nr
Match: XP_010101192.2 (RING-H2 finger protein ATL80 [Morus notabilis])

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-32
Identity = 80/144 (55.56%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGEGN--------------FVKRMCNEDL 60
           MVMEI +S +LL VGIAVL+VIH+CIVGR F G GN                KRM +EDL
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHICIVGRAF-GRGNQGANNNNNNNNILGSNKRMSSEDL 60

Query: 61  EKLPCYEY-----KERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICP 120
           + +PC++Y     KE S V+C VCLE+FK G+ CRLLP+C+HSFH  CIDSWL++TP+CP
Sbjct: 61  KMIPCFDYNMSGEKESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTPVCP 120

Query: 121 ICRTCAAVPKIGL---QENRGVPQ 123
           ICRTCA   KIG+   +E  GV Q
Sbjct: 121 ICRTCAKPAKIGVVLGEEASGVSQ 143

[Close]

BLAST of Moc03g30670 vs. NCBI nr
Match: XP_003634293.2 (PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera])

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-32
Identity = 79/129 (61.24%), Postives = 91/129 (70.54%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFS---GEGNFVKR-------MCNEDLEKLP 60
           MVMEI VS VLL VGIAVLIVIH+CIVGR F    G G  V+R       M  ++L+KLP
Sbjct: 1   MVMEIVVSLVLLFVGIAVLIVIHVCIVGRAFRRAYGNGAMVQRGGSGGLGMSQDELKKLP 60

Query: 61  CYEYK-------ERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPIC 113
           C+EYK         S V+C VCLE+F+ G+ CRLLPNC H FH  CIDSWL+KTPICPIC
Sbjct: 61  CFEYKAVALEKASNSPVDCAVCLENFRKGDKCRLLPNCKHFFHSQCIDSWLLKTPICPIC 120

[Close]

BLAST of Moc03g30670 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 32/68 (47.06%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 41  MCNEDLEKLPCY----EYKERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIK 100
           +  + L KLPCY    E   R    C +CL+  K GEI R LP C H+FH+ C+D WLI+
Sbjct: 151 LSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIR 210

Query: 101 TPICPICR 105
              CPICR
Sbjct: 211 HGSCPICR 218

[Close]

BLAST of Moc03g30670 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.9e-13
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 46  LEKLPCYEYKERS----GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICP 105
           +++LP ++Y E S    G +CVVC++ F+ G+ CR LP C H FH  C+D WLIK   CP
Sbjct: 95  VKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCP 154

[Close]

BLAST of Moc03g30670 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-12
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 46  LEKLPCYEYKERSGV----ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICP 105
           ++ LP + YKE  G     +C VCL  F   +  RLLPNCSH+FH+ CID+WL+    CP
Sbjct: 124 IDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCP 183

[Close]

BLAST of Moc03g30670 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-12
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 46  LEKLPCYEYKE-----RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPIC 105
           ++KLP +++ E     R   +CVVC + F+ G+ CR LP C H FH  C+D+WL+K   C
Sbjct: 89  VKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTC 148

[Close]

BLAST of Moc03g30670 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-12
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 29  RLFSGEGNFVKRMCNED---LEKLPCYEYKE----RSGVECVVCLESFKMGEICRLLPNC 88
           RL+ G  N   R    D   +E LP + +      + G+EC VCL  F+  EI RLLP C
Sbjct: 84  RLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKC 143

Query: 89  SHSFHVHCIDSWLIKTPICPICR 105
            H+FH+ CID WL +   CP+CR
Sbjct: 144 RHAFHIGCIDQWLEQHATCPLCR 166

[Close]

BLAST of Moc03g30670 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.9e-40
Identity = 91/127 (71.65%), Postives = 98/127 (77.17%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGE------GNFVKRMCNEDLEKLPCYEY 60
           MVMEI VSAVLL+VGIAVL+VIH+CIVGR F GE       N  K + N+DLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  K-----ERSGV--ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICRTCA 115
           K       +GV  ECVVCLE FK GE CRLLPNC HSFHV CIDSWL+KTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of Moc03g30670 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.0e-39
Identity = 90/127 (70.87%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGE------GNFVKRMCNEDLEKLPCYEY 60
           MVMEI VSAVLL+VGIAVL+VIH+CIVGR F GE       N  K + N+DLEKLPCYEY
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEY 60

Query: 61  K-----ERSGV--ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICRTCA 115
           K       +GV  ECVVCLE FK GE CRLLPNC HSFHV CIDSWL+KTPICPICRTCA
Sbjct: 61  KSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCA 120

[Close]

BLAST of Moc03g30670 vs. ExPASy TrEMBL
Match: A0A6P3YXL3 (RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.0e-32
Identity = 79/132 (59.85%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGEGN-------------FVKRMCNEDLE 60
           MVMEI +S +LL VGIAVL+VIH+CIVGR F G GN               KRM NEDL+
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAF-GRGNQGMVNMVVQRSSIGSKRMSNEDLK 60

Query: 61  KLPCYEY-------KERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPIC 113
            LPC++Y          S V+C VCLE+FK GE CRLLPNC HSFH  CIDSWL+KTPIC
Sbjct: 61  MLPCFDYVDGRDKGSSSSPVDCAVCLENFKDGEKCRLLPNCRHSFHALCIDSWLLKTPIC 120

[Close]

BLAST of Moc03g30670 vs. ExPASy TrEMBL
Match: W9RES1 (RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.0e-32
Identity = 78/142 (54.93%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 3   MEIAVSAVLLVVGIAVLIVIHMCIVGRLFSGEGN--------------FVKRMCNEDLEK 62
           MEI +S +LL VGIAVL+VIH+CIVGR F G GN                KRM +EDL+ 
Sbjct: 1   MEIVISVILLFVGIAVLVVIHICIVGRAF-GRGNQGANNNNNNNNILGSNKRMSSEDLKM 60

Query: 63  LPCYEY-----KERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPIC 122
           +PC++Y     KE S V+C VCLE+FK G+ CRLLP+C+HSFH  CIDSWL++TP+CPIC
Sbjct: 61  IPCFDYNMSGEKESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTPVCPIC 120

[Close]

BLAST of Moc03g30670 vs. ExPASy TrEMBL
Match: A0A1R3GP14 (Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_34051 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.0e-31
Identity = 73/136 (53.68%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MVMEIAVSAVLLVVGIAVLIVIHMCIVGRLF--------------SGEGNFVKRMCNEDL 60
           +VMEI  S VLL VGIAVL+VIH+CIVGR F              S   N +KRM +E++
Sbjct: 23  VVMEIVFSVVLLFVGIAVLVVIHVCIVGRAFRRGYEVDGSLVQISSNNNNGIKRMSDEEV 82

Query: 61  EKLPCYEYKE----RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPI 119
           +KLP ++YK      S ++CVVCLE+F+ G+ C+LLPNC HSFH  CIDSWL+KTPICPI
Sbjct: 83  KKLPSFDYKAAEKGSSPIDCVVCLENFRKGDKCKLLPNCRHSFHSQCIDSWLLKTPICPI 142

[Close]

BLAST of Moc03g30670 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-14
Identity = 32/68 (47.06%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 41  MCNEDLEKLPCY----EYKERSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIK 100
           +  + L KLPCY    E   R    C +CL+  K GEI R LP C H+FH+ C+D WLI+
Sbjct: 151 LSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIR 210

Query: 101 TPICPICR 105
              CPICR
Sbjct: 211 HGSCPICR 218

[Close]

BLAST of Moc03g30670 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.9e-14
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 46  LEKLPCYEYKERS----GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICP 105
           +++LP ++Y E S    G +CVVC++ F+ G+ CR LP C H FH  C+D WLIK   CP
Sbjct: 95  VKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCP 154

[Close]

BLAST of Moc03g30670 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 46  LEKLPCYEYKERSGV----ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICP 105
           ++ LP + YKE  G     +C VCL  F   +  RLLPNCSH+FH+ CID+WL+    CP
Sbjct: 124 IDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCP 183

[Close]

BLAST of Moc03g30670 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-13
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 46  LEKLPCYEYKE-----RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPIC 105
           ++KLP +++ E     R   +CVVC + F+ G+ CR LP C H FH  C+D+WL+K   C
Sbjct: 89  VKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTC 148

[Close]

BLAST of Moc03g30670 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.1e-13
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 29  RLFSGEGNFVKRMCNED---LEKLPCYEYKE----RSGVECVVCLESFKMGEICRLLPNC 88
           RL+ G  N   R    D   +E LP + +      + G+EC VCL  F+  EI RLLP C
Sbjct: 84  RLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKC 143

Query: 89  SHSFHVHCIDSWLIKTPICPICR 105
            H+FH+ CID WL +   CP+CR
Sbjct: 144 RHAFHIGCIDQWLEQHATCPLCR 166

The following BLAST results are available for this feature:

BLAST of Moc03g30670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994122.1	1.4e-39	71.65	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
XP_022954431.1	4.1e-39	70.87	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
XP_034673610.1	9.9e-33	58.82	RING-H2 finger protein ATL56-like [Vitis riparia]	[more]
XP_010101192.2	3.7e-32	55.56	RING-H2 finger protein ATL80 [Morus notabilis]	[more]
XP_003634293.2	4.9e-32	61.24	PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera]	[more]

BLAST of Moc03g30670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBA0	2.4e-13	47.06	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
Q9M0C3	6.9e-13	49.21	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q8GW38	3.4e-12	47.62	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9ZV51	4.5e-12	45.31	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9SL78	5.8e-12	42.17	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]

BLAST of Moc03g30670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUU5	6.9e-40	71.65	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A6J1GQW8	2.0e-39	70.87	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
A0A6P3YXL3	4.0e-32	59.85	RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 P...	[more]
W9RES1	9.0e-32	54.93	RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV...	[more]
A0A1R3GP14	2.0e-31	53.68	Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_34051 PE=4 SV=1	[more]

BLAST of Moc03g30670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74410.1	1.7e-14	47.06	RING/U-box superfamily protein	[more]
AT4G30370.1	4.9e-14	49.21	RING/U-box superfamily protein	[more]
AT1G23980.1	2.4e-13	47.62	RING/U-box superfamily protein	[more]
AT2G18670.1	3.2e-13	45.31	RING/U-box superfamily protein	[more]
AT2G20030.1	4.1e-13	42.17	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 62..103 e-value: 1.5E-5 score: 34.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 61..104 e-value: 8.2E-12 score: 45.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 62..104 score: 12.076194
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 34..108 e-value: 4.0E-16 score: 60.5
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..114
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..114
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 40..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g30670.1	Moc03g30670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane