Moc03g29890 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g29890
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionStructural constituent of ribosome
Locationchr3: 21320744 .. 21321741 (-)
RNA-Seq ExpressionMoc03g29890
SyntenyMoc03g29890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTCGCTGCAACTTCATCTCTCACGAAGTTCTTCTCCTTCCTCTCCATCTCGAAATCATTATCAATAATTCATAACTCCGTCTCTTTAAACTTTCAGCATCTTCCGAAGTCTGGACCAGCTCCGTTGATTGCCACCATGGACTCTGTTACGTCTTCTTCCCCGAAAGAAACTGCCGTCTTCTTACGCATAAAGTTGTTGGCTAGAGAAGCTGCTGTGATCTCGTTTCTAAAGCAAACCCAGATGAGATTAAACTGGTTAGAATGTGGGAATTTTAGAATTTTAGAATTTCTTCATCACGATGGTTGCATGGTCTGTTTTCTTTCATTTTCTCGGCAACCAAACAGCGGATTTCGATGTCAACTTCTTAAACAGGTTCCTCTTTCAAAAGTTCAATCCAAACCTTGAGGTCCTTGATGCACTAGTACCACCTTTGTTCTATTTTAATCTTCTTTAACACTGTCTAGAACTCGGATGCCAGCCTTAGATTTGATCAATCTCAATTCAAAGAATTAGCTTACTTAAACTACTTCCATTTTAGTGGGAGAGGGAAACAGAAGATGGGAAGATAAAGATTGTTAAATTAGAAAGGTTGTTGTCAAAAAGGAAAATAGATGGTTCAAAATATCTGAAATCAGCTGCTGAATAAACAGCTTAAATTGGAAGATGCTGCTTAGTTACAAGGTGAGACCCATGATTAGCATTGAGATTATTGGTGACTAGGGGTCACTTCTACGGCTGATTTCCAGAAATCCATCTTTCTTACTGTAATTTATGTATTTAAAGAAGAATCTTTTCAGCTCTGATTTGAATTGTCTAAATAGTTCTGAATCTGATGCCAAGGAAGAAAACTTTCAATGATTTCCACTAAATCACATTATCAACAGCTTTGAGATTTCTGTTCACGTTATAGCTTTGCCATGGTAGATAATTCTTTAACATTGTCCAACTTTAGCACGACTGCCAATGAATCGAAGTACGTACTTCTGTACTGA

mRNA sequence

ATGGCCGTCGCTGCAACTTCATCTCTCACGAAGTTCTTCTCCTTCCTCTCCATCTCGAAATCATTATCAATAATTCATAACTCCGTCTCTTTAAACTTTCAGCATCTTCCGAAGTCTGGACCAGCTCCGTTGATTGCCACCATGGACTCTGTTACGTCTTCTTCCCCGAAAGAAACTGCCGTCTTCTTACGCATAAAGTTGTTGGCTAGAGAAGCTGCTGTGATCTCGTTTCTAAAGCAAACCCAGATGAGATTAAACTGCTTTGCCATGGTAGATAATTCTTTAACATTGTCCAACTTTAGCACGACTGCCAATGAATCGAAGTACGTACTTCTGTACTGA

Coding sequence (CDS)

ATGGCCGTCGCTGCAACTTCATCTCTCACGAAGTTCTTCTCCTTCCTCTCCATCTCGAAATCATTATCAATAATTCATAACTCCGTCTCTTTAAACTTTCAGCATCTTCCGAAGTCTGGACCAGCTCCGTTGATTGCCACCATGGACTCTGTTACGTCTTCTTCCCCGAAAGAAACTGCCGTCTTCTTACGCATAAAGTTGTTGGCTAGAGAAGCTGCTGTGATCTCGTTTCTAAAGCAAACCCAGATGAGATTAAACTGCTTTGCCATGGTAGATAATTCTTTAACATTGTCCAACTTTAGCACGACTGCCAATGAATCGAAGTACGTACTTCTGTACTGA

Protein sequence

MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRIKLLAREAAVISFLKQTQMRLNCFAMVDNSLTLSNFSTTANESKYVLLY
Homology
[Close]
BLAST of Moc03g29890 vs. NCBI nr
Match: XP_038894121.1 (30S ribosomal protein S21, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSSLTKFFS LSISKS  I HNSVS+N Q LPKS PA L AT  SVT SS +   
Sbjct: 1  MAAAATSSLTKFFSSLSISKSSQIHHNSVSINLQSLPKSKPARLFATRGSVTPSSQEPKG 60

Query: 61 VFLRIKL 68
          VF  +++
Sbjct: 61 VFSGMRI 67

[Close]
BLAST of Moc03g29890 vs. NCBI nr
Match: KAA0055302.1 (Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-07
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V  RI
Sbjct: 61 VSSRI 65

[Close]
BLAST of Moc03g29890 vs. NCBI nr
Match: TYJ99226.1 (putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-07
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V  RI
Sbjct: 61 VSSRI 65

[Close]
BLAST of Moc03g29890 vs. NCBI nr
Match: XP_008439325.1 (PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 structural constituent of ribosome [Cucumis melo subsp. melo])

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-07
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V  RI
Sbjct: 61 VSSRI 65

[Close]
BLAST of Moc03g29890 vs. NCBI nr
Match: XP_004152510.2 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypothetical protein Csa_014065 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-06
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+N Q LP S    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V LRI
Sbjct: 61 VPLRI 65

[Close]
BLAST of Moc03g29890 vs. ExPASy TrEMBL
Match: A0A5A7UHJ6 (Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001450 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V  RI
Sbjct: 61 VSSRI 65

[Close]
BLAST of Moc03g29890 vs. ExPASy TrEMBL
Match: A0A5D3BJF5 (Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004370 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V  RI
Sbjct: 61 VSSRI 65

[Close]
BLAST of Moc03g29890 vs. ExPASy TrEMBL
Match: E5GBW8 (Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V  RI
Sbjct: 61 VSSRI 65

[Close]
BLAST of Moc03g29890 vs. ExPASy TrEMBL
Match: A0A1S3AZ70 (uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINFQSLPKSKQTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V  RI
Sbjct: 61 VSSRI 65

[Close]
BLAST of Moc03g29890 vs. ExPASy TrEMBL
Match: A0A0A0LWJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 1  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETA 60
          MA AATSS+T FFSFLSISKS  I HNSVS+N Q LP S    L A+  +V SSS +   
Sbjct: 1  MAAAATSSITNFFSFLSISKSSQIHHNSVSINLQSLPNSKLTRLFASRGNVASSSQEPKG 60

Query: 61 VFLRI 66
          V LRI
Sbjct: 61 VPLRI 65

The following BLAST results are available for this feature:
BLAST of Moc03g29890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894121.11.1e-0864.1830S ribosomal protein S21, chloroplastic-like [Benincasa hispida][more]
KAA0055302.13.4e-0761.54Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa][more]
TYJ99226.13.4e-0761.54putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa][more]
XP_008439325.13.4e-0761.54PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo] >ADN33967.1 struc... [more]
XP_004152510.23.8e-0660.0030S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN64376.1 hypotheti... [more]
BLAST of Moc03g29890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc03g29890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UHJ61.7e-0761.54Ribosomal_S21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BJF51.7e-0761.54Putative Ribosomal protein S21 family protein OS=Cucumis melo var. makuwa OX=119... [more]
E5GBW81.7e-0761.54Structural constituent of ribosome OS=Cucumis melo subsp. melo OX=412675 PE=3 SV... [more]
A0A1S3AZ701.7e-0761.54uncharacterized protein LOC103484145 OS=Cucumis melo OX=3656 GN=LOC103484145 PE=... [more]
A0A0A0LWJ61.8e-0660.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050150 PE=3 SV=1[more]
BLAST of Moc03g29890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g29890.1Moc03g29890.1mRNA